| Year |
Citation |
Score |
| 2023 |
Niederhuber MJ, Leatham-Jensen M, McKay DJ. The SWI/SNF nucleosome remodeler constrains enhancer activity during Drosophila wing development. Genetics. PMID 37949841 DOI: 10.1093/genetics/iyad196 |
0.414 |
|
| 2023 |
McPherson JE, Grossmann LC, Salzler HR, Armstrong RL, Kwon E, Matera AG, McKay DJ, Duronio RJ. Reduced histone gene copy number disrupts Drosophila Polycomb function. Genetics. PMID 37279945 DOI: 10.1093/genetics/iyad106 |
0.392 |
|
| 2023 |
Buchert EM, Fogarty EA, Uyehara CM, McKay DJ, Buttitta LA. A tissue dissociation method for ATAC-seq and CUT&RUN in pupal tissues. Fly. 17: 2209481. PMID 37211836 DOI: 10.1080/19336934.2023.2209481 |
0.784 |
|
| 2023 |
McPherson JE, Grossmann LC, Armstrong RL, Kwon E, Salzler HR, Matera AG, McKay DJ, Duronio RJ. Reduced histone gene copy number disrupts Polycomb function. Biorxiv : the Preprint Server For Biology. PMID 37034607 DOI: 10.1101/2023.03.28.534544 |
0.423 |
|
| 2023 |
Salzler HR, Vandadi V, McMichael BD, Brown JC, Boerma SA, Leatham-Jensen MP, Adams KM, Meers MP, Simon JM, Duronio RJ, McKay DJ, Matera AG. Distinct roles for canonical and variant histone H3 lysine-36 in Polycomb silencing. Science Advances. 9: eadf2451. PMID 36857457 DOI: 10.1126/sciadv.adf2451 |
0.375 |
|
| 2022 |
Levis NA, McKay DJ, Pfennig DW. Disentangling the developmental origins of a novel phenotype: enhancement versus reversal of environmentally induced gene expression. Proceedings. Biological Sciences. 289: 20221764. PMID 36285495 DOI: 10.1098/rspb.2022.1764 |
0.335 |
|
| 2022 |
Uyehara CM, Leatham-Jensen M, McKay DJ. Opportunistic binding of EcR to open chromatin drives tissue-specific developmental responses. Proceedings of the National Academy of Sciences of the United States of America. 119: e2208935119. PMID 36161884 DOI: 10.1073/pnas.2208935119 |
0.795 |
|
| 2021 |
Nystrom SL, McKay DJ. Memes: A motif analysis environment in R using tools from the MEME Suite. Plos Computational Biology. 17: e1008991. PMID 34570758 DOI: 10.1371/journal.pcbi.1008991 |
0.712 |
|
| 2020 |
Niederhuber MJ, McKay DJ. Mechanisms underlying the control of dynamic regulatory element activity and chromatin accessibility during metamorphosis. Current Opinion in Insect Science. PMID 32979530 DOI: 10.1016/j.cois.2020.08.007 |
0.364 |
|
| 2020 |
Harris RE, Stinchfield MJ, Nystrom SL, McKay DJ, Hariharan IK. Damage-responsive, maturity-silenced enhancers regulate multiple genes that direct regeneration in . Elife. 9. PMID 32490812 DOI: 10.7554/Elife.58305 |
0.767 |
|
| 2020 |
Nystrom SL, Niederhuber MJ, McKay DJ. Expression of E93 provides an instructive cue to control dynamic enhancer activity and chromatin accessibility during development. Development (Cambridge, England). 147. PMID 32094114 DOI: 10.1242/Dev.181909 |
0.766 |
|
| 2020 |
Harris RE, Stinchfield MJ, Nystrom SL, McKay DJ, Hariharan IK. Author response: Damage-responsive, maturity-silenced enhancers regulate multiple genes that direct regeneration in Drosophila Elife. DOI: 10.7554/Elife.58305.Sa2 |
0.431 |
|
| 2020 |
Anyetei-Anum CS, McKay DJ. Investigation into the Role of Histone H3 Lysine 4 in Developmental Gene Regulation The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.03832 |
0.447 |
|
| 2019 |
Ma Y, McKay DJ, Buttitta L. Changes in chromatin accessibility ensure robust cell cycle exit in terminally differentiated cells. Plos Biology. 17: e3000378. PMID 31479438 DOI: 10.1371/Journal.Pbio.3000378 |
0.411 |
|
| 2019 |
Uyehara CM, McKay DJ. Direct and widespread role for the nuclear receptor EcR in mediating the response to ecdysone in . Proceedings of the National Academy of Sciences of the United States of America. PMID 31019084 DOI: 10.1073/Pnas.1900343116 |
0.811 |
|
| 2019 |
Poulton JS, McKay DJ, Peifer M. Centrosome Loss Triggers a Transcriptional Program To Counter Apoptosis-Induced Oxidative Stress. Genetics. PMID 30867197 DOI: 10.1534/Genetics.119.302051 |
0.439 |
|
| 2019 |
Armstrong RL, Penke TJR, Chao SK, Gentile GM, Strahl BD, Matera AG, McKay DJ, Duronio RJ. H3K9 Promotes Under-Replication of Pericentromeric Heterochromatin in Drosophila Salivary Gland Polytene Chromosomes. Genes. 10. PMID 30700014 DOI: 10.3390/Genes10020093 |
0.417 |
|
| 2019 |
Leatham-Jensen M, Uyehara CM, Strahl BD, Matera AG, Duronio RJ, McKay DJ. Lysine 27 of replication-independent histone H3.3 is required for Polycomb target gene silencing but not for gene activation. Plos Genetics. 15: e1007932. PMID 30699116 DOI: 10.1371/Journal.Pgen.1007932 |
0.779 |
|
| 2019 |
McKay DJ. Using Formaldehyde-Assisted Isolation of Regulatory Elements (FAIRE) to Identify Functional Regulatory DNA in Insect Genomes. Methods in Molecular Biology (Clifton, N.J.). 1858: 89-97. PMID 30414113 DOI: 10.1007/978-1-4939-8775-7_8 |
0.449 |
|
| 2018 |
Armstrong RL, Penke TJR, Strahl BD, Matera AG, McKay DJ, MacAlpine DM, Duronio RJ. Chromatin conformation and transcriptional activity are permissive regulators of DNA replication initiation in Drosophila. Genome Research. PMID 30279224 DOI: 10.1101/Gr.239913.118 |
0.474 |
|
| 2018 |
Meers MP, Leatham-Jensen M, Penke TJR, McKay DJ, Duronio RJ, Matera AG. An Animal Model for Genetic Analysis of Multi-Gene Families: Cloning and Transgenesis of Large Tandemly Repeated Histone Gene Clusters. Methods in Molecular Biology (Clifton, N.J.). 1832: 309-325. PMID 30073535 DOI: 10.1007/978-1-4939-8663-7_17 |
0.466 |
|
| 2018 |
Lai YT, Deem KD, Borràs-Castells F, Sambrani N, Rudolf H, Suryamohan K, El-Sherif E, Halfon MS, McKay DJ, Tomoyasu Y. Enhancer identification and activity evaluation in the red flour beetle,. Development (Cambridge, England). PMID 29540499 DOI: 10.1242/Dev.160663 |
0.387 |
|
| 2018 |
Meers MP, Adelman K, Duronio RJ, Strahl BD, McKay DJ, Matera AG. Transcription start site profiling uncovers divergent transcription and enhancer-associated RNAs in Drosophila melanogaster. Bmc Genomics. 19: 157. PMID 29466941 DOI: 10.1186/S12864-018-4510-7 |
0.471 |
|
| 2017 |
Penke TJR, McKay DJ, Strahl BD, Matera AG, Duronio RJ. Functional Redundancy of Variant and Canonical Histone H3 Lysine 9 Modification in Drosophila. Genetics. PMID 29133298 DOI: 10.1534/Genetics.117.300480 |
0.372 |
|
| 2017 |
Uyehara CM, Nystrom SL, Niederhuber MJ, Leatham-Jensen M, Ma Y, Buttitta LA, McKay DJ. Hormone-dependent control of developmental timing through regulation of chromatin accessibility. Genes & Development. PMID 28536147 DOI: 10.1101/Gad.298182.117 |
0.741 |
|
| 2017 |
Meers MP, Henriques T, Lavender CA, McKay DJ, Strahl BD, Duronio RJ, Adelman K, Matera AG. Histone gene replacement reveals a post-transcriptional role for H3K36 in maintaining metazoan transcriptome fidelity. Elife. 6. PMID 28346137 DOI: 10.7554/Elife.23249 |
0.487 |
|
| 2017 |
Meers MP, Henriques T, Lavender CA, McKay DJ, Strahl BD, Duronio RJ, Adelman K, Matera AG. Author response: Histone gene replacement reveals a post-transcriptional role for H3K36 in maintaining metazoan transcriptome fidelity Elife. DOI: 10.7554/Elife.23249.063 |
0.492 |
|
| 2016 |
Pearson JC, McKay DJ, Lieb JD, Crews ST. Chromatin profiling of Drosophila CNS subpopulations identifies active transcriptional enhancers. Development (Cambridge, England). 143: 3723-3732. PMID 27802137 DOI: 10.1242/Dev.136895 |
0.694 |
|
| 2016 |
Guo Y, Flegel K, Kumar J, McKay DJ, Buttitta LA. Ecdysone signaling induces two phases of cell cycle exit in Drosophila cells. Biology Open. PMID 27737823 DOI: 10.1242/Bio.017525 |
0.338 |
|
| 2016 |
Penke TJ, McKay DJ, Strahl BD, Matera AG, Duronio RJ. Direct interrogation of the role of H3K9 in metazoan heterochromatin function. Genes & Development. PMID 27566777 DOI: 10.1101/Gad.286278.116 |
0.491 |
|
| 2016 |
Tatomer DC, Terzo E, Curry KP, Salzler H, Sabath I, Zapotoczny G, McKay DJ, Dominski Z, Marzluff WF, Duronio RJ. Concentrating pre-mRNA processing factors in the histone locus body facilitates efficient histone mRNA biogenesis. The Journal of Cell Biology. PMID 27241916 DOI: 10.1083/Jcb.201504043 |
0.37 |
|
| 2015 |
Schulz KN, Bondra ER, Moshe A, Villalta JE, Lieb JD, Kaplan T, McKay DJ, Harrison MM. Zelda is differentially required for chromatin accessibility, transcription-factor binding and gene expression in the early Drosophila embryo. Genome Research. PMID 26335634 DOI: 10.1101/Gr.192682.115 |
0.673 |
|
| 2015 |
McKay DJ, Klusza S, Penke TJ, Meers MP, Curry KP, McDaniel SL, Malek PY, Cooper SW, Tatomer DC, Lieb JD, Strahl BD, Duronio RJ, Matera AG. Interrogating the function of metazoan histones using engineered gene clusters. Developmental Cell. 32: 373-86. PMID 25669886 DOI: 10.1016/J.Devcel.2014.12.025 |
0.617 |
|
| 2014 |
McKay DJ, Lieb JD. A split personality for nucleosomes. Cell. 159: 1249-51. PMID 25480289 DOI: 10.1016/J.Cell.2014.11.030 |
0.568 |
|
| 2014 |
Agelopoulos M, McKay DJ, Mann RS. cgChIP: a cell type- and gene-specific method for chromatin analysis. Methods in Molecular Biology (Clifton, N.J.). 1196: 291-306. PMID 25151171 DOI: 10.1007/978-1-4939-1242-1_18 |
0.679 |
|
| 2013 |
McKay DJ, Lieb JD. A common set of DNA regulatory elements shapes Drosophila appendages. Developmental Cell. 27: 306-18. PMID 24229644 DOI: 10.1016/J.Devcel.2013.10.009 |
0.655 |
|
| 2012 |
Agelopoulos M, McKay DJ, Mann RS. Developmental regulation of chromatin conformation by Hox proteins in Drosophila. Cell Reports. 1: 350-9. PMID 22523743 DOI: 10.1016/J.Celrep.2012.03.003 |
0.635 |
|
| 2012 |
Roberts DM, Pronobis MI, Alexandre KM, Rogers GC, Poulton JS, Schneider DE, Jung KC, McKay DJ, Peifer M. Defining components of the ß-catenin destruction complex and exploring its regulation and mechanisms of action during development. Plos One. 7: e31284. PMID 22359584 DOI: 10.1371/Journal.Pone.0031284 |
0.397 |
|
| 2009 |
Nolis IK, McKay DJ, Mantouvalou E, Lomvardas S, Merika M, Thanos D. Transcription factors mediate long-range enhancer-promoter interactions. Proceedings of the National Academy of Sciences of the United States of America. 106: 20222-7. PMID 19923429 DOI: 10.1073/Pnas.0902454106 |
0.471 |
|
| 2009 |
McKay DJ, Estella C, Mann RS. The origins of the Drosophila leg revealed by the cis-regulatory architecture of the Distalless gene. Development (Cambridge, England). 136: 61-71. PMID 19036798 DOI: 10.1242/Dev.029975 |
0.771 |
|
| 2008 |
Estella C, McKay DJ, Mann RS. Molecular integration of wingless, decapentaplegic, and autoregulatory inputs into Distalless during Drosophila leg development. Developmental Cell. 14: 86-96. PMID 18194655 DOI: 10.1016/J.Devcel.2007.11.002 |
0.773 |
|
| 2006 |
Noro B, Culi J, McKay DJ, Zhang W, Mann RS. Distinct functions of homeodomain-containing and homeodomain-less isoforms encoded by homothorax. Genes & Development. 20: 1636-50. PMID 16778079 DOI: 10.1101/Gad.1412606 |
0.731 |
|
| 2004 |
Gebelein B, McKay DJ, Mann RS. Direct integration of Hox and segmentation gene inputs during Drosophila development. Nature. 431: 653-9. PMID 15470419 DOI: 10.1038/Nature02946 |
0.746 |
|
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