| Year |
Citation |
Score |
| 2022 |
Yan S, Ilgu M, Nilsen-Hamilton M, Lamm MH. Computational Modeling of RNA Aptamers: Structure Prediction of the Apo State. The Journal of Physical Chemistry. B. PMID 36097649 DOI: 10.1021/acs.jpcb.2c04649 |
0.771 |
|
| 2022 |
Anisuzzaman S, Geraskin IM, Ilgu M, Bendickson L, Kraus GA, Nilsen-Hamilton M. Ligands with poly-fluorophenyl moieties promote a local structural rearrangement in the Spinach2 and Broccoli aptamers that increases ligand affinities. Rna (New York, N.Y.). PMID 35351813 DOI: 10.1261/rna.079005.121 |
0.781 |
|
| 2021 |
Ozturk M, Nilsen-Hamilton M, Ilgu M. Aptamer Applications in Neuroscience. Pharmaceuticals (Basel, Switzerland). 14. PMID 34959661 DOI: 10.3390/ph14121260 |
0.714 |
|
| 2020 |
Yan S, Peck JM, Ilgu M, Nilsen-Hamilton M, Lamm MH. Sampling Performance of Multiple Independent Molecular Dynamics Simulations of an RNA Aptamer. Acs Omega. 5: 20187-20201. PMID 32832772 DOI: 10.1021/acsomega.0c01867 |
0.738 |
|
| 2020 |
Zhao W, Bendickson L, Nilsen-Hamilton M. The Lipocalin2 Gene is Regulated in Mammary Epithelial Cells by NFκB and C/EBP In Response to Mycoplasma. Scientific Reports. 10: 7641. PMID 32376831 DOI: 10.1038/S41598-020-63393-X |
0.317 |
|
| 2019 |
Ilgu M, Yan S, Khounlo RM, Lamm MH, Nilsen-Hamilton M. Common Secondary and Tertiary Structural Features of Aptamer-Ligand Interaction Shared by RNA Aptamers with Different Primary Sequences. Molecules (Basel, Switzerland). 24. PMID 31835789 DOI: 10.3390/Molecules24244535 |
0.774 |
|
| 2019 |
Santra K, Geraskin IM, Nilsen-Hamilton M, Kraus GA, Petrich JW. Characterization of the Photophysical Behavior of DFHBI Derivatives: Fluorogenic Molecules that Illuminate the Spinach RNA Aptamer. The Journal of Physical Chemistry. B. PMID 30807171 DOI: 10.1021/Acs.Jpcb.8B11166 |
0.335 |
|
| 2018 |
Auwardt SL, Seo YJ, Ilgu M, Ray J, Feldges RR, Shubham S, Bendickson L, Levine HA, Nilsen-Hamilton M. Aptamer-enabled uptake of small molecule ligands. Scientific Reports. 8: 15712. PMID 30356136 DOI: 10.1038/S41598-018-33887-W |
0.797 |
|
| 2018 |
Shubham S, Hoinka J, Banerjee S, Swanson E, Dillard JA, Lennemann NJ, Przytycka TM, Maury W, Nilsen-Hamilton M. A 2'FY-RNA Motif Defines an Aptamer for Ebolavirus Secreted Protein. Scientific Reports. 8: 12373. PMID 30120364 DOI: 10.1038/S41598-018-30590-8 |
0.379 |
|
| 2016 |
Sachan A, Ilgu M, Kempema AM, Kraus GA, Nilsen-Hamilton M. Specificity and ligand affinities of the cocaine aptamer; impact of structural features and physiological NaCl. Analytical Chemistry. PMID 27348073 DOI: 10.1021/Acs.Analchem.6B01633 |
0.742 |
|
| 2016 |
Ray J, Shin I, Ilgu M, Bendickson L, Gupta V, Kraus GA, Nilsen-Hamilton M. IMAGEtags: Quantifying mRNA Transcription in Real Time with Multiaptamer Reporters. Methods in Enzymology. 572: 193-213. PMID 27241755 DOI: 10.1016/Bs.Mie.2016.02.028 |
0.794 |
|
| 2016 |
Ilgu M, Nilsen-Hamilton M. Aptamers in analytics. The Analyst. 141: 1551-68. PMID 26864075 DOI: 10.1039/C5An01824B |
0.762 |
|
| 2016 |
Ray J, Shin I, Ilgu M, Bendickson L, Gupta V, Kraus GA, Nilsen-Hamilton M. IMAGEtags: Quantifying mRNA Transcription in Real Time with Multiaptamer Reporters Methods in Enzymology. DOI: 10.1016/bs.mie.2016.02.028 |
0.807 |
|
| 2015 |
Ilgu M, Bendickson L, Ray J, Wang T, Geraskin I, Kraus GA, Nilsen-Hamilton M. Light-up and FRET aptamer reporters; evaluating their applications for imaging transcription in eukaryotic cells. Methods (San Diego, Calif.). PMID 26707205 DOI: 10.1016/J.Ymeth.2015.12.009 |
0.798 |
|
| 2015 |
Mitra D, Bouthcko R, Ray J, Nilsen-Hamilton M. Detecting cells in time varying intensity images in confocal microscopy for gene expression studies in living cells Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9420. DOI: 10.1117/12.2081691 |
0.587 |
|
| 2014 |
Seo YJ, Nilsen-Hamilton M, Levine HA. A computational study of alternate SELEX. Bulletin of Mathematical Biology. 76: 1455-521. PMID 24878869 DOI: 10.1007/S11538-014-9954-6 |
0.315 |
|
| 2014 |
Ilgu M, Fulton DB, Yennamalli RM, Lamm MH, Sen TZ, Nilsen-Hamilton M. An adaptable pentaloop defines a robust neomycin-B RNA aptamer with conditional ligand-bound structures. Rna (New York, N.Y.). 20: 815-24. PMID 24757168 DOI: 10.1261/Rna.041145.113 |
0.788 |
|
| 2014 |
Shin I, Ray J, Gupta V, Ilgu M, Beasley J, Bendickson L, Mehanovic S, Kraus GA, Nilsen-Hamilton M. Live-cell imaging of Pol II promoter activity to monitor gene expression with RNA IMAGEtag reporters. Nucleic Acids Research. 42: e90. PMID 24753407 DOI: 10.1093/Nar/Gku297 |
0.779 |
|
| 2013 |
Banerjee J, Nilsen-Hamilton M. Aptamers: multifunctional molecules for biomedical research. Journal of Molecular Medicine (Berlin, Germany). 91: 1333-42. PMID 24045702 DOI: 10.1007/S00109-013-1085-2 |
0.356 |
|
| 2013 |
Ilgu M, Wang T, Lamm MH, Nilsen-Hamilton M. Investigating the malleability of RNA aptamers. Methods (San Diego, Calif.). 63: 178-87. PMID 23535583 DOI: 10.1016/J.Ymeth.2013.03.016 |
0.788 |
|
| 2012 |
Zhai L, Wang T, Kang K, Zhao Y, Shrotriya P, Nilsen-Hamilton M. An RNA aptamer-based microcantilever sensor to detect the inflammatory marker, mouse lipocalin-2. Analytical Chemistry. 84: 8763-70. PMID 22946879 DOI: 10.1021/Ac3020643 |
0.573 |
|
| 2012 |
Song X, Thalacker FW, Nilsen-Hamilton M. Synergistic and multidimensional regulation of plasminogen activator inhibitor type 1 expression by transforming growth factor type β and epidermal growth factor. The Journal of Biological Chemistry. 287: 12520-8. PMID 22334677 DOI: 10.1074/Jbc.M111.338079 |
0.522 |
|
| 2012 |
Nath S, Spencer VA, Han J, Chang H, Zhang K, Fontenay GV, Anderson C, Hyman JM, Nilsen-Hamilton M, Chang YT, Parvin B. Identification of fluorescent compounds with non-specific binding property via high throughput live cell microscopy. Plos One. 7: e28802. PMID 22242152 DOI: 10.1371/Journal.Pone.0028802 |
0.331 |
|
| 2012 |
Levine HA, Seo YJ, Nilsen-Hamilton M. A discrete dynamical system arising in molecular biology Discrete and Continuous Dynamical Systems - Series B. 17: 2091-2151. DOI: 10.3934/Dcdsb.2012.17.2091 |
0.327 |
|
| 2011 |
Kang K, Sachan A, Nilsen-Hamilton M, Shrotriya P. Aptamer functionalized microcantilever sensors for cocaine detection. Langmuir : the Acs Journal of Surfaces and Colloids. 27: 14696-702. PMID 21875108 DOI: 10.1021/La202067Y |
0.518 |
|
| 2010 |
Petersen LK, Determan AS, Westgate C, Bendickson L, Nilsen-Hamilton M, Narasimhan B. Lipocalin-2-loaded Amphiphilic Polyanhydride Microparticles Accelerate Cell Migration. Journal of Biomaterials Science. Polymer Edition. PMID 20615357 DOI: 10.1163/092050610X502776 |
0.311 |
|
| 2010 |
Seo YJ, Chen S, Nilsen-Hamilton M, Levine HA. A mathematical analysis of multiple-target SELEX. Bulletin of Mathematical Biology. 72: 1623-65. PMID 20077028 DOI: 10.1007/S11538-009-9491-X |
0.31 |
|
| 2009 |
Wang T, Hoy JA, Lamm MH, Nilsen-Hamilton M. Computational and experimental analyses converge to reveal a coherent yet malleable aptamer structure that controls chemical reactivity. Journal of the American Chemical Society. 131: 14747-55. PMID 19778045 DOI: 10.1021/Ja902719Q |
0.372 |
|
| 2007 |
Levine HA, Nilsen-Hamilton M. A mathematical analysis of SELEX. Computational Biology and Chemistry. 31: 11-35. PMID 17218151 DOI: 10.1016/J.Compbiolchem.2006.10.002 |
0.326 |
|
| 2005 |
Cong X, Nilsen-Hamilton M. Allosteric aptamers: targeted reversibly attenuated probes. Biochemistry. 44: 7945-54. PMID 15924413 DOI: 10.1021/Bi047507X |
0.612 |
|
| 2003 |
Nilsen-Hamilton M, Liu Q, Ryon J, Bendickson L, Lepont P, Chang Q. Tissue involution and the acute phase response. Annals of the New York Academy of Sciences. 995: 94-108. PMID 12814942 DOI: 10.1111/J.1749-6632.2003.Tb03213.X |
0.742 |
|
| 2002 |
Ryon J, Bendickson L, Nilsen-Hamilton M. High expression in involuting reproductive tissues of uterocalin/24p3, a lipocalin and acute phase protein. The Biochemical Journal. 367: 271-7. PMID 12067275 DOI: 10.1042/Bj20020026 |
0.356 |
|
| 2002 |
Burke DH, Ozerova ND, Nilsen-Hamilton M. Allosteric hammerhead ribozyme TRAPs. Biochemistry. 41: 6588-94. PMID 12022862 DOI: 10.1021/Bi0201522 |
0.395 |
|
| 2001 |
Fassett JT, Nilsen-Hamilton M. Mrp3, a mitogen-regulated protein/proliferin gene expressed in wound healing and in hair follicles. Endocrinology. 142: 2129-37. PMID 11316781 DOI: 10.1210/Endo.142.5.8132 |
0.671 |
|
| 2000 |
Fassett JT, Hamilton RT, Nilsen-Hamilton M. Mrp4, a new mitogen-regulated protein/proliferin gene; unique in this gene family for its expression in the adult mouse tail and ear. Endocrinology. 141: 1863-71. PMID 10803597 DOI: 10.1210/Endo.141.5.7479 |
0.697 |
|
| 1999 |
Fang Y, Lepont P, Fassett JT, Ford SP, Mubaidin A, Hamilton RT, Nilsen-Hamilton M. Signaling between the placenta and the uterus involving the mitogen-regulated protein/proliferins. Endocrinology. 140: 5239-49. PMID 10537154 DOI: 10.1210/Endo.140.11.7142 |
0.736 |
|
| 1999 |
Mohideen MAPK, Hruska-Hageman A, Nilsen-Hamilton M. A unique bFGF-responsive transcriptional element Gene. 237: 81-90. PMID 10524239 DOI: 10.1016/S0378-1119(99)00306-6 |
0.339 |
|
| 1997 |
Liu Q, Ryon J, Nilsen-Hamilton M. Uterocalin: A mouse acute phase protein expressed in the uterus around birth Molecular Reproduction and Development. 46: 507-514. PMID 9094098 DOI: 10.1002/(Sici)1098-2795(199704)46:4<507::Aid-Mrd9>3.0.Co;2-S |
0.317 |
|
| 1995 |
Nelson JT, Rosenzweig N, Nilsen-Hamilton M. Characterization of the mitogen-regulated protein (Proliferin) receptor Endocrinology. 136: 283-288. PMID 7828542 DOI: 10.1210/Endo.136.1.7828542 |
0.362 |
|
| 1995 |
Chuang TH, Hamilton RT, Nilsen-Hamilton M. Cloning of the mink plasminogen activator inhibitor type-1 messenger RNA: an mRNA with a short half life. Gene. 162: 303-8. PMID 7557448 DOI: 10.1016/0378-1119(95)00261-4 |
0.317 |
|
| 1995 |
Liu Q, Nilsen-Hamilton M. Identification of a new acute phase protein Journal of Biological Chemistry. 270: 22565-22570. PMID 7545679 DOI: 10.1074/Jbc.270.38.22565 |
0.308 |
|
| 1992 |
Thalacker FW, Nilsen-Hamilton M. Opposite and independent actions of cyclic AMP and transforming growth factor β in the regulation of type 1 plasminogen activator inhibitor expression Biochemical Journal. 287: 855-862. PMID 1332686 DOI: 10.1042/Bj2870855 |
0.301 |
|
| 1991 |
Davis TR, Tabatabai L, Bruns K, Hamilton RT, Nilsen-Hamilton M. Basic fibroblast growth factor induces 3T3 fibroblasts to synthesize and secrete a cyclophilin-like protein and beta 2-microglobulin. Biochimica Et Biophysica Acta. 1095: 145-52. PMID 1932134 DOI: 10.1016/0167-4889(91)90077-B |
0.338 |
|
| 1991 |
Nilsen-Hamilton M, Jang YJ, Delgado M, Shim JK, Bruns K, Chiang CP, Fang Y, Parfett CL, Denhardt DT, Hamilton RT. Regulation of the expression of mitogen-regulated protein (MRP; proliferin) and cathepsin L in cultured cells and in the murine placenta. Molecular and Cellular Endocrinology. 77: 115-22. PMID 1815996 DOI: 10.1016/0303-7207(91)90065-Z |
0.345 |
|
| 1988 |
Nilsen-Hamilton M, Jang YJ, Alvarez-Azaustre E, Hamilton RT. Regulation of the production of a prolactin-like protein (MRP/PLF) in 3T3 cells and in the mouse placenta. Molecular and Cellular Endocrinology. 56: 179-90. PMID 3259519 DOI: 10.1016/0303-7207(88)90059-7 |
0.344 |
|
| 1987 |
Nilsen-Hamilton M, Hamilton RT, Alvarez-Azaustre E. Relationship between mitogen-regulated protein (MRP) and proliferin (PLF), a member of the prolactin/growth hormone family. Gene. 51: 163-70. PMID 3596242 DOI: 10.1016/0378-1119(87)90304-0 |
0.343 |
|
| 1987 |
Nilsen-Hamilton M, Hamilton RT. Detection of proteins induced by growth regulators. Methods in Enzymology. 147: 427-44. PMID 3312945 DOI: 10.1016/0076-6879(87)47132-2 |
0.331 |
|
| 1986 |
Fienup VK, Jeng MH, Hamilton RT, Nilsen-Hamilton M. Relation between the regulation of DNA synthesis and the production of two secreted glycoproteins by 12-O-tetradecanoylphorbol-13-acetate in 3T3 cells and in phorbol ester nonresponsive 3T3 variants. Journal of Cellular Physiology. 129: 151-8. PMID 3095338 DOI: 10.1002/Jcp.1041290205 |
0.311 |
|
| 1985 |
Parfett CL, Hamilton RT, Howell BW, Edwards DR, Nilsen-Hamilton M, Denhardt DT. Characterization of a cDNA clone encoding murine mitogen-regulated protein: regulation of mRNA levels in mortal and immortal cell lines. Molecular and Cellular Biology. 5: 3289-92. PMID 3841805 DOI: 10.1128/Mcb.5.11.3289 |
0.325 |
|
| 1985 |
Hamilton RT, Nilsen-Hamilton M, Adams G. Superinduction by cycloheximide of mitogen-induced secreted proteins produced by Balb/c 3T3 cells. Journal of Cellular Physiology. 123: 201-8. PMID 2579961 DOI: 10.1002/Jcp.1041230208 |
0.321 |
|
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