Wendy Thomas - Publications

Affiliations: 
Bioengineering University of Washington, Seattle, Seattle, WA 
Area:
Biomedical Engineering, Microbiology Biology

44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Hogan K, Paul S, Lin G, Fuerte-Stone J, Sokurenko EV, Thomas WE. Effect of Gravity on Bacterial Adhesion to Heterogeneous Surfaces. Pathogens (Basel, Switzerland). 12. PMID 37513788 DOI: 10.3390/pathogens12070941  0.313
2022 Thomas WE, Carlucci L, Yakovenko O, Interlandi G, Le Trong I, Aprikian P, Magala P, Larson L, Sledneva Y, Tchesnokova V, Stenkamp RE, Sokurenko EV. Recombinant FimH Adhesin Demonstrates How the Allosteric Catch Bond Mechanism Can Support Fast and Strong Bacterial Attachment in the Absence of Shear. Journal of Molecular Biology. 167681. PMID 35697293 DOI: 10.1016/j.jmb.2022.167681  0.481
2021 Kisiela DI, Magala P, Interlandi G, Carlucci LA, Ramos A, Tchesnokova V, Basanta B, Yarov-Yarovoy V, Avagyan H, Hovhannisyan A, Thomas WE, Stenkamp RE, Klevit RE, Sokurenko EV. Toggle switch residues control allosteric transitions in bacterial adhesins by participating in a concerted repacking of the protein core. Plos Pathogens. 17: e1009440. PMID 33826682 DOI: 10.1371/journal.ppat.1009440  0.334
2019 Magala P, Klevit RE, Thomas WE, Sokurenko EV, Stenkamp RE. RMSD analysis of structures of the bacterial protein FimH identifies five conformations of its lectin domain. Proteins. PMID 31622514 DOI: 10.1002/Prot.25840  0.423
2018 Yakovenko O, Nunez J, Bensing B, Yu H, Mount J, Zeng J, Hawkins J, Chen X, Sullam PM, Thomas W. SRR Adhesins Mediate Shear-Enhanced Streptococcal Binding to Platelets. Infection and Immunity. PMID 29581195 DOI: 10.1128/Iai.00160-18  0.502
2017 Interlandi G, Yakovenko O, Tu AY, Harris J, Le J, Chen J, López JA, Thomas WE. Specific electrostatic interactions between charged amino acid residues regulate binding of von Willebrand factor to blood platelets. The Journal of Biological Chemistry. PMID 28924049 DOI: 10.1074/jbc.M117.797456  0.422
2016 Tronic EH, Yakovenko O, Weidner T, Baio JE, Penkala R, Castner DG, Thomas WE. Differential surface activation of the A1 domain of von Willebrand factor. Biointerphases. 11: 029803. PMID 26968213 DOI: 10.1116/1.4943618  0.754
2015 Yakovenko O, Tchesnokova V, Sokurenko EV, Thomas WE. Inactive conformation enhances binding function in physiological conditions. Proceedings of the National Academy of Sciences of the United States of America. 112: 9884-9. PMID 26216967 DOI: 10.1073/pnas.1503160112  0.345
2015 Kisiela DI, Avagyan H, Friend D, Jalan A, Gupta S, Interlandi G, Liu Y, Tchesnokova V, Rodriguez VB, Sumida JP, Strong RK, Wu XR, Thomas WE, Sokurenko EV. Inhibition and Reversal of Microbial Attachment by an Antibody with Parasteric Activity against the FimH Adhesin of Uropathogenic E. coli. Plos Pathogens. 11: e1004857. PMID 25974133 DOI: 10.1371/Journal.Ppat.1004857  0.687
2015 Al-Rekabi Z, Feghhi S, Taparia N, Munday AD, Thomas WE, Lopez JA, Spatz JP, Sniadecki NJ. The Role of Ligand Density in the Binding of Von Willebrand Factor by the Glycoprotein Ib-IX-V Complex in Platelets Biophysical Journal. 108: 417a. DOI: 10.1016/J.Bpj.2014.11.2284  0.392
2014 Whitfield MJ, Luo JP, Thomas WE. Yielding elastic tethers stabilize robust cell adhesion. Plos Computational Biology. 10: e1003971. PMID 25473833 DOI: 10.1371/journal.pcbi.1003971  0.613
2013 Kisiela DI, Rodriguez VB, Tchesnokova V, Avagyan H, Aprikian P, Liu Y, Wu XR, Thomas WE, Sokurenko EV. Conformational inactivation induces immunogenicity of the receptor-binding pocket of a bacterial adhesin. Proceedings of the National Academy of Sciences of the United States of America. 110: 19089-94. PMID 24191044 DOI: 10.1073/Pnas.1314395110  0.71
2013 Rodriguez VB, Kidd BA, Interlandi G, Tchesnokova V, Sokurenko EV, Thomas WE. Allosteric coupling in the bacterial adhesive protein FimH. The Journal of Biological Chemistry. 288: 24128-39. PMID 23821547 DOI: 10.1074/Jbc.M113.461376  0.752
2013 Liu Y, Esser L, Interlandi G, Kisiela DI, Tchesnokova V, Thomas WE, Sokurenko E, Xia D, Savarino SJ. Tight conformational coupling between the domains of the enterotoxigenic Escherichia coli fimbrial adhesin CfaE regulates binding state transition. The Journal of Biological Chemistry. 288: 9993-10001. PMID 23393133 DOI: 10.1074/Jbc.M112.413534  0.389
2012 Interlandi G, Ling M, Tu AY, Chung DW, Thomas WE. Structural basis of type 2A von Willebrand disease investigated by molecular dynamics simulations and experiments. Plos One. 7: e45207. PMID 23110044 DOI: 10.1371/journal.pone.0045207  0.304
2011 Tchesnokova V, Aprikian P, Kisiela D, Gowey S, Korotkova N, Thomas W, Sokurenko E. Type 1 fimbrial adhesin FimH elicits an immune response that enhances cell adhesion of Escherichia coli. Infection and Immunity. 79: 3895-904. PMID 21768279 DOI: 10.1128/Iai.05169-11  0.515
2011 Aprikian P, Interlandi G, Kidd BA, Le Trong I, Tchesnokova V, Yakovenko O, Whitfield MJ, Bullitt E, Stenkamp RE, Thomas WE, Sokurenko EV. The bacterial fimbrial tip acts as a mechanical force sensor. Plos Biology. 9: e1000617. PMID 21572990 DOI: 10.1371/Journal.Pbio.1000617  0.763
2011 Whitfield M, Thomas WE. A nanoadhesive composed of receptor-ligand bonds Journal of Adhesion. 87: 427-446. DOI: 10.1080/00218464.2011.575311  0.624
2011 Thomas WE, Penkala B, Whitfield M, Tu A, Munday A, Kulman J, López JA. Mechanical Regulation of Von Willebrand Factor A1 Domain Biophysical Journal. 100: 480a-481a. DOI: 10.1016/J.Bpj.2010.12.2817  0.662
2010 Whitfield M, Ghose T, Thomas W. Shear-stabilized rolling behavior of E. coli examined with simulations. Biophysical Journal. 99: 2470-8. PMID 20959087 DOI: 10.1016/J.Bpj.2010.08.045  0.632
2010 Interlandi G, Thomas W. The catch bond mechanism between von Willebrand factor and platelet surface receptors investigated by molecular dynamics simulations. Proteins. 78: 2506-22. PMID 20602356 DOI: 10.1002/Prot.22759  0.529
2010 Le Trong I, Aprikian P, Kidd BA, Thomas WE, Sokurenko EV, Stenkamp RE. Donor strand exchange and conformational changes during E. coli fimbrial formation. Journal of Structural Biology. 172: 380-8. PMID 20570733 DOI: 10.1016/J.Jsb.2010.06.002  0.636
2010 Le Trong I, Aprikian P, Kidd BA, Forero-Shelton M, Tchesnokova V, Rajagopal P, Rodriguez V, Interlandi G, Klevit R, Vogel V, Stenkamp RE, Sokurenko EV, Thomas WE. Structural basis for mechanical force regulation of the adhesin FimH via finger trap-like beta sheet twisting. Cell. 141: 645-55. PMID 20478255 DOI: 10.1016/J.Cell.2010.03.038  0.78
2010 Tchesnokova V, McVeigh AL, Kidd B, Yakovenko O, Thomas WE, Sokurenko EV, Savarino SJ. Shear-enhanced binding of intestinal colonization factor antigen I of enterotoxigenic Escherichia coli. Molecular Microbiology. 76: 489-502. PMID 20345656 DOI: 10.1111/J.1365-2958.2010.07116.X  0.713
2010 Munday AD, Penkala RA, Davizon PD, Pierce CJ, Hobbs WE, Kulman JD, Thomas WE, Lopez JA. Elevated Cytosolic Cyclic AMP Inhibits Platelet Adhesion to Von Willebrand Factor by Disengaging the Glycoprotein Ib-IX-V Complex From Lipid Rafts Blood. 116: 3204-3204. DOI: 10.1182/Blood.V116.21.3204.3204  0.741
2010 Thomas WE, Penkala RA, Hillenmeyer E, Whitfield M, Tu A, Munday AD, Lenting PJ, Kulman J, López JA. Regulation of Von Willebrand Factor A1 Domain by Mechanical Force and Neighboring Domains Blood. 116: 2117-2117. DOI: 10.1182/Blood.V116.21.2117.2117  0.749
2009 Kidd BA, Baker D, Thomas WE. Computation of conformational coupling in allosteric proteins. Plos Computational Biology. 5: e1000484. PMID 19714199 DOI: 10.1371/Journal.Pcbi.1000484  0.626
2009 Thomas WE, Le Trong I, Aprikian P, Forero M, Kidd B, Interlandi G, Tchesnekova V, Yakovenko O, Vogel V, Stenkamp R, Sokurenko E. Allosteric Regulation Across a β-Sandwich Protein: How a Bacterial Adhesive Protein is Activated by Mechanical Force Biophysical Journal. 96: 548a. DOI: 10.1016/J.Bpj.2008.12.2969  0.709
2008 Sokurenko EV, Vogel V, Thomas WE. Catch-bond mechanism of force-enhanced adhesion: counterintuitive, elusive, but ... widespread? Cell Host & Microbe. 4: 314-23. PMID 18854236 DOI: 10.1016/J.Chom.2008.09.005  0.373
2008 Thomas W. Catch bonds in adhesion. Annual Review of Biomedical Engineering. 10: 39-57. PMID 18647111 DOI: 10.1146/Annurev.Bioeng.10.061807.160427  0.444
2008 Nilsson LM, Thomas WE, Sokurenko EV, Vogel V. Beyond induced-fit receptor-ligand interactions: structural changes that can significantly extend bond lifetimes. Structure (London, England : 1993). 16: 1047-58. PMID 18611378 DOI: 10.1016/J.Str.2008.03.012  0.372
2008 Thomas WE, Vogel V, Sokurenko E. Biophysics of catch bonds. Annual Review of Biophysics. 37: 399-416. PMID 18573088 DOI: 10.1146/Annurev.Biophys.37.032807.125804  0.407
2008 Yakovenko O, Sharma S, Forero M, Tchesnokova V, Aprikian P, Kidd B, Mach A, Vogel V, Sokurenko E, Thomas WE. FimH forms catch bonds that are enhanced by mechanical force due to allosteric regulation. The Journal of Biological Chemistry. 283: 11596-605. PMID 18292092 DOI: 10.1074/Jbc.M707815200  0.642
2008 Tchesnokova V, Aprikian P, Yakovenko O, Larock C, Kidd B, Vogel V, Thomas W, Sokurenko E. Integrin-like allosteric properties of the catch bond-forming FimH adhesin of Escherichia coli. The Journal of Biological Chemistry. 283: 7823-33. PMID 18174167 DOI: 10.1074/Jbc.M707804200  0.741
2008 Korotkova N, Yang Y, Le Trong I, Cota E, Demeler B, Marchant J, Thomas WE, Stenkamp RE, Moseley SL, Matthews S. Binding of Dr adhesins of Escherichia coli to carcinoembryonic antigen triggers receptor dissociation. Molecular Microbiology. 67: 420-34. PMID 18086185 DOI: 10.1111/J.1365-2958.2007.06054.X  0.366
2007 Nilsson LM, Yakovenko O, Tchesnokova V, Thomas WE, Schembri MA, Vogel V, Klemm P, Sokurenko EV. The cysteine bond in the Escherichia coli FimH adhesin is critical for adhesion under flow conditions. Molecular Microbiology. 65: 1158-69. PMID 17697252 DOI: 10.1111/J.1365-2958.2007.05858.X  0.415
2007 Aprikian P, Tchesnokova V, Kidd B, Yakovenko O, Yarov-Yarovoy V, Trinchina E, Vogel V, Thomas W, Sokurenko E. Interdomain interaction in the FimH adhesin of Escherichia coli regulates the affinity to mannose. The Journal of Biological Chemistry. 282: 23437-46. PMID 17567583 DOI: 10.1074/Jbc.M702037200  0.737
2006 Thomas W. For catch bonds, it all hinges on the interdomain region. The Journal of Cell Biology. 174: 911-3. PMID 17000873 DOI: 10.1083/Jcb.200609029  0.371
2006 Forero M, Yakovenko O, Sokurenko EV, Thomas WE, Vogel V. Uncoiling mechanics of Escherichia coli type I fimbriae are optimized for catch bonds. Plos Biology. 4: e298. PMID 16933977 DOI: 10.1371/Journal.Pbio.0040298  0.344
2006 Nilsson LM, Thomas WE, Trintchina E, Vogel V, Sokurenko EV. Catch bond-mediated adhesion without a shear threshold: trimannose versus monomannose interactions with the FimH adhesin of Escherichia coli. The Journal of Biological Chemistry. 281: 16656-63. PMID 16624825 DOI: 10.1074/Jbc.M511496200  0.396
2006 Thomas W, Forero M, Yakovenko O, Nilsson L, Vicini P, Sokurenko E, Vogel V. Catch-bond model derived from allostery explains force-activated bacterial adhesion. Biophysical Journal. 90: 753-64. PMID 16272438 DOI: 10.1529/Biophysj.105.066548  0.478
2005 Pereverzev YV, Prezhdo OV, Forero M, Sokurenko EV, Thomas WE. The two-pathway model for the catch-slip transition in biological adhesion. Biophysical Journal. 89: 1446-54. PMID 15951391 DOI: 10.1529/biophysj.105.062158  0.314
2004 Thomas WE, Nilsson LM, Forero M, Sokurenko EV, Vogel V. Shear-dependent 'stick-and-roll' adhesion of type 1 fimbriated Escherichia coli. Molecular Microbiology. 53: 1545-57. PMID 15387828 DOI: 10.1111/J.1365-2958.2004.04226.X  0.333
2002 Thomas WE, Trintchina E, Forero M, Vogel V, Sokurenko EV. Bacterial adhesion to target cells enhanced by shear force. Cell. 109: 913-23. PMID 12110187 DOI: 10.1016/S0092-8674(02)00796-1  0.39
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