| Year |
Citation |
Score |
| 2020 |
Harvey C, O'Toole K, Liu C, Mariano PS, Dunaway-Mariano D, Allen KN. Structural Analysis of Binding Determinants of Trehalose-6-phosphate Phosphatase using Ground-State Complexes. Biochemistry. PMID 32786412 DOI: 10.1021/Acs.Biochem.0C00317 |
0.711 |
|
| 2018 |
Zhang C, Allen KN, Dunaway-Mariano D. Mechanism of Substrate Recognition and Catalysis of the Haloalkanoic Acid Dehalogenase Family Member, α-Phosphoglucomutase. Biochemistry. PMID 29952545 DOI: 10.1021/Acs.Biochem.8B00396 |
0.44 |
|
| 2018 |
Ji T, Zhang C, Zheng L, Dunaway-Mariano D, Allen KN. The structural basis of the molecular switch between phosphatase and mutase functions of human phosphomannomutase 1 under ischemic conditions. Biochemistry. PMID 29695157 DOI: 10.1021/Acs.Biochem.8B00223 |
0.537 |
|
| 2017 |
Latham JA, Ji T, Matthews K, Mariano P, Allen KN, Dunaway-Mariano D. The Hotdog-fold Thioesterase PA1618 Catalytic Mechanism Revealed by X-ray Structure Determination of the Substrate Oxygen Ester Analog Complex. Chembiochem : a European Journal of Chemical Biology. PMID 28741300 DOI: 10.1002/Cbic.201700322 |
0.706 |
|
| 2017 |
Liu C, Dunaway-Mariano D, Mariano PS. Rational design of reversible inhibitors for trehalose 6-phosphate phosphatases. European Journal of Medicinal Chemistry. 128: 274-286. PMID 28192710 DOI: 10.1016/J.Ejmech.2017.02.001 |
0.678 |
|
| 2017 |
Liu C, Dunaway-Mariano D, Mariano PS. Rational design of first generation inhibitors for trehalose 6-phosphate phosphatases Tetrahedron. 73: 1324-1330. DOI: 10.1016/J.Tet.2017.01.041 |
0.666 |
|
| 2016 |
Allen KN, Dunaway-Mariano D. Catalytic scaffolds for phosphoryl group transfer. Current Opinion in Structural Biology. 41: 172-179. PMID 27526404 DOI: 10.1016/J.Sbi.2016.07.017 |
0.457 |
|
| 2015 |
Huang H, Pandya C, Liu C, Al-Obaidi NF, Wang M, Zheng L, Toews Keating S, Aono M, Love JD, Evans B, Seidel RD, Hillerich BS, Garforth SJ, Almo SC, Mariano PS, ... Dunaway-Mariano D, et al. Panoramic view of a superfamily of phosphatases through substrate profiling. Proceedings of the National Academy of Sciences of the United States of America. 112: E1974-83. PMID 25848029 DOI: 10.1073/Pnas.1423570112 |
0.742 |
|
| 2015 |
Lim SH, Lee WS, Kim YI, Sohn Y, Cho DW, Kim C, Kim E, Latham JA, Dunaway-Mariano D, Mariano PS. Photochemical and enzymatic SET promoted C-C bond cleavage reactions of lignin β-1 model compounds containing varying number of methoxy substituents on their arene rings Tetrahedron. 71: 4236-4247. DOI: 10.1016/J.Tet.2015.04.077 |
0.631 |
|
| 2014 |
Pandya C, Farelli JD, Dunaway-Mariano D, Allen KN. Enzyme promiscuity: engine of evolutionary innovation. The Journal of Biological Chemistry. 289: 30229-36. PMID 25210039 DOI: 10.1074/Jbc.R114.572990 |
0.449 |
|
| 2014 |
Wu R, Latham JA, Chen D, Farelli J, Zhao H, Matthews K, Allen KN, Dunaway-Mariano D. Structure and catalysis in the Escherichia coli hotdog-fold thioesterase paralogs YdiI and YbdB. Biochemistry. 53: 4788-805. PMID 25010423 DOI: 10.1021/Bi500334V |
0.796 |
|
| 2014 |
Latham JA, Chen D, Allen KN, Dunaway-Mariano D. Divergence of substrate specificity and function in the Escherichia coli hotdog-fold thioesterase paralogs YdiI and YbdB. Biochemistry. 53: 4775-87. PMID 24992697 DOI: 10.1021/Bi500333M |
0.757 |
|
| 2014 |
Farelli JD, Galvin BD, Li Z, Liu C, Aono M, Garland M, Hallett OE, Causey TB, Ali-Reynolds A, Saltzberg DJ, Carlow CK, Dunaway-Mariano D, Allen KN. Structure of the trehalose-6-phosphate phosphatase from Brugia malayi reveals key design principles for anthelmintic drugs. Plos Pathogens. 10: e1004245. PMID 24992307 DOI: 10.1371/Journal.Ppat.1004245 |
0.71 |
|
| 2014 |
Pandya C, Dunaway-Mariano D, Xia Y, Allen KN. Structure-guided approach for detecting large domain inserts in protein sequences as illustrated using the haloacid dehalogenase superfamily. Proteins. 82: 1896-906. PMID 24577717 DOI: 10.1002/Prot.24543 |
0.354 |
|
| 2013 |
Dunaway-Mariano D, Holden HM, Raushel FM. W. W. "Mo" Cleland: a catalytic life. Biochemistry. 52: 9092-6. PMID 24308306 DOI: 10.1021/Bi4015709 |
0.415 |
|
| 2013 |
Lim SH, Nahm K, Ra CS, Cho DW, Yoon UC, Latham JA, Dunaway-Mariano D, Mariano PS. Effects of alkoxy groups on arene rings of lignin β-O-4 model compounds on the efficiencies of single electron transfer-promoted photochemical and enzymatic C-C Bond Cleavage Reactions. The Journal of Organic Chemistry. 78: 9431-43. PMID 23992466 DOI: 10.1021/Jo401680Z |
0.639 |
|
| 2013 |
Bryan T, González JM, Bacik JP, DeNunzio NJ, Unkefer CJ, Schrader TE, Ostermann A, Dunaway-Mariano D, Allen KN, Fisher SZ. Neutron diffraction studies towards deciphering the protonation state of catalytic residues in the bacterial KDN9P phosphatase. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 69: 1015-9. PMID 23989152 DOI: 10.1107/S1744309113021386 |
0.422 |
|
| 2013 |
Pandya C, Brown S, Pieper U, Sali A, Dunaway-Mariano D, Babbitt PC, Xia Y, Allen KN. Consequences of domain insertion on sequence-structure divergence in a superfold. Proceedings of the National Academy of Sciences of the United States of America. 110: E3381-7. PMID 23959887 DOI: 10.1073/Pnas.1305519110 |
0.337 |
|
| 2013 |
Wang M, Song F, Wu R, Allen KN, Mariano PS, Dunaway-Mariano D. Co-evolution of HAD phosphatase and hotdog-fold thioesterase domain function in the menaquinone-pathway fusion proteins BF1314 and PG1653. Febs Letters. 587: 2851-9. PMID 23851007 DOI: 10.1016/J.Febslet.2013.07.009 |
0.552 |
|
| 2013 |
Daughtry KD, Huang H, Malashkevich V, Patskovsky Y, Liu W, Ramagopal U, Sauder JM, Burley SK, Almo SC, Dunaway-Mariano D, Allen KN. Structural basis for the divergence of substrate specificity and biological function within HAD phosphatases in lipopolysaccharide and sialic acid biosynthesis. Biochemistry. 52: 5372-86. PMID 23848398 DOI: 10.1021/Bi400659K |
0.636 |
|
| 2013 |
Wu C, Dunaway-Mariano D, Mariano PS. Design, synthesis, and evaluation of inhibitors of pyruvate phosphate dikinase. The Journal of Organic Chemistry. 78: 1910-22. PMID 23094589 DOI: 10.1021/Jo3018473 |
0.451 |
|
| 2012 |
Chen D, Latham J, Zhao H, Bisoffi M, Farelli J, Dunaway-Mariano D. Human brown fat inducible thioesterase variant 2 cellular localization and catalytic function. Biochemistry. 51: 6990-9. PMID 22897136 DOI: 10.1021/Bi3008824 |
0.724 |
|
| 2012 |
Song F, Thoden JB, Zhuang Z, Latham J, Trujillo M, Holden HM, Dunaway-Mariano D. The catalytic mechanism of the hotdog-fold enzyme superfamily 4-hydroxybenzoyl-CoA thioesterase from Arthrobacter sp. strain SU. Biochemistry. 51: 7000-16. PMID 22873756 DOI: 10.1021/Bi301059M |
0.825 |
|
| 2012 |
Zhao H, Lim K, Choudry A, Latham JA, Pathak MC, Dominguez D, Luo L, Herzberg O, Dunaway-Mariano D. Correlation of structure and function in the human hotdog-fold enzyme hTHEM4. Biochemistry. 51: 6490-2. PMID 22871024 DOI: 10.1021/Bi300968N |
0.763 |
|
| 2012 |
Dong J, Zhuang Z, Song F, Dunaway-Mariano D, Carey PR. A Thioester Substrate Binds to the Enzyme Arthrobacter Thioesterase in Two Ionization States; Evidence from Raman Difference Spectroscopy. Journal of Raman Spectroscopy : Jrs. 43: 65-71. PMID 22347769 DOI: 10.1002/Jrs.3002 |
0.731 |
|
| 2012 |
Zhuang Z, Latham J, Song F, Zhang W, Trujillo M, Dunaway-Mariano D. Investigation of the catalytic mechanism of the hotdog-fold enzyme superfamily Pseudomonas sp. strain CBS3 4-hydroxybenzoyl-CoA thioesterase. Biochemistry. 51: 786-94. PMID 22208697 DOI: 10.1021/Bi2013917 |
0.787 |
|
| 2011 |
Lu Z, Dunaway-Mariano D, Allen KN. The X-ray crystallographic structure and specificity profile of HAD superfamily phosphohydrolase BT1666: Comparison of paralogous functions in B. thetaiotaomicron Proteins: Structure, Function and Bioinformatics. 79: 3099-3107. PMID 21989931 DOI: 10.1002/Prot.23137 |
0.646 |
|
| 2011 |
Huang H, Patskovsky Y, Toro R, Farelli JD, Pandya C, Almo SC, Allen KN, Dunaway-Mariano D. Divergence of structure and function in the haloacid dehalogenase enzyme superfamily: Bacteroides thetaiotaomicron BT2127 is an inorganic pyrophosphatase. Biochemistry. 50: 8937-49. PMID 21894910 DOI: 10.1021/Bi201181Q |
0.616 |
|
| 2011 |
Cho DW, Latham JA, Park HJ, Yoon UC, Langan P, Dunaway-Mariano D, Mariano PS. Regioselectivity of enzymatic and photochemical single electron transfer promoted carbon-carbon bond fragmentation reactions of tetrameric lignin model compounds. The Journal of Organic Chemistry. 76: 2840-52. PMID 21384857 DOI: 10.1021/Jo200253V |
0.644 |
|
| 2011 |
Kim A, Benning MM, OkLee S, Quinn J, Martin BM, Holden HM, Dunaway-Mariano D. Divergence of chemical function in the alkaline phosphatase superfamily: structure and mechanism of the P-C bond cleaving enzyme phosphonoacetate hydrolase. Biochemistry. 50: 3481-94. PMID 21366328 DOI: 10.1021/Bi200165H |
0.39 |
|
| 2011 |
Li Z, Liu Z, Cho DW, Zou J, Gong M, Breece RM, Galkin A, Li L, Zhao H, Maestas GD, Tierney DL, Herzberg O, Dunaway-Mariano D, Mariano PS. Rational design, synthesis and evaluation of first generation inhibitors of the Giardia lamblia fructose-1,6-biphosphate aldolase. Journal of Inorganic Biochemistry. 105: 509-17. PMID 21333622 DOI: 10.1016/J.Jinorgbio.2010.12.012 |
0.36 |
|
| 2010 |
Cho DW, Parthasarathi R, Pimentel AS, Maestas GD, Park HJ, Yoon UC, Dunaway-Mariano D, Gnanakaran S, Langan P, Mariano PS. Nature and kinetic analysis of carbon-carbon bond fragmentation reactions of cation radicals derived from SET-oxidation of lignin model compounds. The Journal of Organic Chemistry. 75: 6549-62. PMID 20831160 DOI: 10.1021/Jo1012509 |
0.335 |
|
| 2010 |
Galkin A, Kulakova L, Wu R, Nash TE, Dunaway-Mariano D, Herzberg O. X-ray structure and characterization of carbamate kinase from the human parasite Giardia lamblia. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 66: 386-90. PMID 20383005 DOI: 10.1107/S1744309110004665 |
0.472 |
|
| 2010 |
Wang L, Huang H, Nguyen HH, Allen KN, Mariano PS, Dunaway-Mariano D. Divergence of biochemical function in the HAD superfamily: D-glycero-D-manno-heptose-1,7-bisphosphate phosphatase (GmhB) Biochemistry. 49: 1072-1081. PMID 20050615 DOI: 10.1021/Bi902018Y |
0.652 |
|
| 2010 |
Nguyen HH, LiangbingWang, Huang H, Peisach E, Dunaway-Mariano D, Allen KN. Structural determinants of substrate recognition in the HAD superfamily member D-glycero-D-manno-heptose-1,7-bisphosphate phosphatase (GmhB) Biochemistry. 49: 1082-1092. PMID 20050614 DOI: 10.1021/Bi902019Q |
0.605 |
|
| 2009 |
Allen KN, Dunaway-Mariano D. Markers of fitness in a successful enzyme superfamily Current Opinion in Structural Biology. 19: 658-665. PMID 19889535 DOI: 10.1016/J.Sbi.2009.09.008 |
0.44 |
|
| 2009 |
Li Z, Kulakova L, Li L, Galkin A, Zhao Z, Nash TE, Mariano PS, Herzberg O, Dunaway-Mariano D. Mechanisms of catalysis and inhibition operative in the arginine deiminase from the human pathogen Giardia lamblia. Bioorganic Chemistry. 37: 149-61. PMID 19640561 DOI: 10.1016/J.Bioorg.2009.06.001 |
0.411 |
|
| 2009 |
Li Z, Song F, Zhuang Z, Dunaway-Mariano D, Anderson KS. Monitoring enzyme catalysis in the multimeric state: direct observation of Arthrobacter 4-hydroxybenzoyl-coenzyme A thioesterase catalytic complexes using time-resolved electrospray ionization mass spectrometry. Analytical Biochemistry. 394: 209-16. PMID 19635449 DOI: 10.1016/J.Ab.2009.07.030 |
0.705 |
|
| 2009 |
Galkin A, Kulakova L, Wu R, Gong M, Dunaway-Mariano D, Herzberg O. X-ray structure and kinetic properties of ornithine transcarbamoylase from the human parasite Giardia lamblia. Proteins. 76: 1049-53. PMID 19507245 DOI: 10.1002/Prot.22469 |
0.396 |
|
| 2009 |
Zhao H, Martin BM, Bisoffi M, Dunaway-Mariano D. The Akt C-terminal modulator protein is an acyl-CoA thioesterase of the Hotdog-Fold family. Biochemistry. 48: 5507-9. PMID 19453107 DOI: 10.1021/Bi900710W |
0.403 |
|
| 2009 |
Wu R, Reger AS, Lu X, Gulick AM, Dunaway-Mariano D. The mechanism of domain alternation in the acyl-adenylate forming ligase superfamily member 4-chlorobenzoate: coenzyme A ligase. Biochemistry. 48: 4115-25. PMID 19320426 DOI: 10.1021/Bi9002327 |
0.625 |
|
| 2009 |
Galkin A, Li Z, Li L, Kulakova L, Pal LR, Dunaway-Mariano D, Herzberg O. Structural insights into the substrate binding and stereoselectivity of giardia fructose-1,6-bisphosphate aldolase. Biochemistry. 48: 3186-96. PMID 19236002 DOI: 10.1021/Bi9001166 |
0.548 |
|
| 2009 |
Cao J, Xu H, Zhao H, Gong W, Dunaway-Mariano D. The mechanisms of human hotdog-fold thioesterase 2 (hTHEM2) substrate recognition and catalysis illuminated by a structure and function based analysis. Biochemistry. 48: 1293-304. PMID 19170545 DOI: 10.1021/Bi801879Z |
0.485 |
|
| 2009 |
Dai J, Finci L, Zhang C, Lahiri S, Zhang G, Peisach E, Allen KN, Dunaway-Mariano D. Analysis of the structural determinants underlying discrimination between substrate and solvent in β-phosphoglucomutase catalysis Biochemistry. 48: 1984-1995. PMID 19154134 DOI: 10.1021/Bi801653R |
0.746 |
|
| 2009 |
Narayanan B, Niu W, Joosten HJ, Li Z, Kuipers RK, Schaap PJ, Dunaway-Mariano D, Herzberg O. Structure and function of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member. Journal of Molecular Biology. 386: 486-503. PMID 19133276 DOI: 10.1016/J.Jmb.2008.12.037 |
0.676 |
|
| 2009 |
Chen D, Wu R, Bryan TL, Dunaway-Mariano D. In vitro kinetic analysis of substrate specificity in enterobactin biosynthetic lower pathway enzymes provides insight into the biochemical function of the hot dog-fold thioesterase EntH. Biochemistry. 48: 511-3. PMID 19119850 DOI: 10.1021/Bi802207T |
0.598 |
|
| 2009 |
Lu Z, Wang L, Dunaway-Mariano D, Allen KN. Structure-function analysis of 2-Keto-3-deoxy-D-glycero-D-galactonononate- 9-phosphate Phosphatase defines specificity elements in type C0 haloalkanoate dehalogenase family members Journal of Biological Chemistry. 284: 1224-1233. PMID 18986982 DOI: 10.1074/Jbc.M807056200 |
0.729 |
|
| 2008 |
Dunaway-Mariano D. Enzyme function discovery. Structure (London, England : 1993). 16: 1599-600. PMID 19000810 DOI: 10.1016/J.Str.2008.10.001 |
0.371 |
|
| 2008 |
Wang L, Lu Z, Allen KN, Mariano PS, Dunaway-Mariano D. Human Symbiont Bacteroides thetaiotaomicron Synthesizes 2-Keto-3-Deoxy-D-Glycero-D- Galacto-Nononic Acid (KDN) Chemistry and Biology. 15: 893-897. PMID 18804026 DOI: 10.1016/J.Chembiol.2008.08.005 |
0.638 |
|
| 2008 |
Wu R, Cao J, Lu X, Reger AS, Gulick AM, Dunaway-Mariano D. Mechanism of 4-chlorobenzoate:coenzyme a ligase catalysis. Biochemistry. 47: 8026-39. PMID 18620421 DOI: 10.1021/Bi800698M |
0.639 |
|
| 2008 |
Reger AS, Wu R, Dunaway-Mariano D, Gulick AM. Structural characterization of a 140 degrees domain movement in the two-step reaction catalyzed by 4-chlorobenzoate:CoA ligase. Biochemistry. 47: 8016-25. PMID 18620418 DOI: 10.1021/Bi800696Y |
0.529 |
|
| 2008 |
Lu Z, Dunaway-Mariano D, Allen KN. The catalytic scaffold of the haloalkanoic acid dehalogenase enzyme superfamily acts as a mold for the trigonal bipyramidal transition state Proceedings of the National Academy of Sciences of the United States of America. 105: 5687-5692. PMID 18398008 DOI: 10.1073/Pnas.0710800105 |
0.63 |
|
| 2008 |
Li L, Li Z, Wang C, Xu D, Mariano PS, Guo H, Dunaway-Mariano D. The electrostatic driving force for nucleophilic catalysis in L-arginine deiminase: a combined experimental and theoretical study. Biochemistry. 47: 4721-32. PMID 18366187 DOI: 10.1021/Bi7023496 |
0.463 |
|
| 2008 |
Willis MA, Zhuang Z, Song F, Howard A, Dunaway-Mariano D, Herzberg O. Structure of YciA from Haemophilus influenzae (HI0827), a hexameric broad specificity acyl-coenzyme A thioesterase. Biochemistry. 47: 2797-805. PMID 18260643 DOI: 10.1021/Bi702336D |
0.752 |
|
| 2008 |
Zhuang Z, Song F, Zhao H, Li L, Cao J, Eisenstein E, Herzberg O, Dunaway-Mariano D. Divergence of function in the hot dog fold enzyme superfamily: the bacterial thioesterase YciA. Biochemistry. 47: 2789-96. PMID 18247525 DOI: 10.1021/Bi702334H |
0.726 |
|
| 2008 |
Li L, Li Z, Chen D, Lu X, Feng X, Wright EC, Solberg NO, Dunaway-Mariano D, Mariano PS, Galkin A, Kulakova L, Herzberg O, Green-Church KB, Zhang L. Inactivation of microbial arginine deiminases by L-canavanine. Journal of the American Chemical Society. 130: 1918-31. PMID 18205354 DOI: 10.1021/Ja0760877 |
0.642 |
|
| 2008 |
Narayanan BC, Niu W, Han Y, Zou J, Mariano PS, Dunaway-Mariano D, Herzberg O. Structure and function of PA4872 from Pseudomonas aeruginosa, a novel class of oxaloacetate decarboxylase from the PEP mutase/isocitrate lyase superfamily. Biochemistry. 47: 167-82. PMID 18081320 DOI: 10.1021/Bi701954P |
0.691 |
|
| 2008 |
Joosten HJ, Han Y, Niu W, Vervoort J, Dunaway-Mariano D, Schaap PJ. Identification of fungal oxaloacetate hydrolyase within the isocitrate lyase/PEP mutase enzyme superfamily using a sequence marker-based method. Proteins. 70: 157-66. PMID 17654546 DOI: 10.1002/Prot.21622 |
0.671 |
|
| 2008 |
Peisach E, Wang L, Burroughs AM, Aravind L, Dunaway-Mariano D, Allen KN. The X-ray crystallographic structure and activity analysis of a Pseudomonas-specific subfamily of the HAD enzyme superfamily evidences a novel biochemical function Proteins: Structure, Function and Genetics. 70: 197-207. PMID 17654544 DOI: 10.1002/Prot.21583 |
0.642 |
|
| 2007 |
Lim K, Read RJ, Chen CC, Tempczyk A, Wei M, Ye D, Wu C, Dunaway-Mariano D, Herzberg O. Swiveling domain mechanism in pyruvate phosphate dikinase. Biochemistry. 46: 14845-53. PMID 18052212 DOI: 10.1021/Bi701848W |
0.618 |
|
| 2007 |
Wu R, Reger AS, Cao J, Gulick AM, Dunaway-Mariano D. Rational redesign of the 4-chlorobenzoate binding site of 4-chlorobenzoate: coenzyme a ligase for expanded substrate range. Biochemistry. 46: 14487-99. PMID 18027984 DOI: 10.1021/Bi701609W |
0.505 |
|
| 2007 |
Han Y, Joosten HJ, Niu W, Zhao Z, Mariano PS, McCalman M, van Kan J, Schaap PJ, Dunaway-Mariano D. Oxaloacetate hydrolase, the C-C bond lyase of oxalate secreting fungi. The Journal of Biological Chemistry. 282: 9581-90. PMID 17244616 DOI: 10.1074/Jbc.M608961200 |
0.644 |
|
| 2007 |
Galkin A, Kulakova L, Melamud E, Li L, Wu C, Mariano P, Dunaway-Mariano D, Nash TE, Herzberg O. Characterization, kinetics, and crystal structures of fructose-1,6-bisphosphate aldolase from the human parasite, Giardia lamblia. The Journal of Biological Chemistry. 282: 4859-67. PMID 17166851 DOI: 10.1074/Jbc.M609534200 |
0.512 |
|
| 2007 |
Song F, Zhuang Z, Dunaway-Mariano D. Structure-activity analysis of base and enzyme-catalyzed 4-hydroxybenzoyl coenzyme A hydrolysis. Bioorganic Chemistry. 35: 1-10. PMID 16962159 DOI: 10.1016/J.Bioorg.2006.07.002 |
0.731 |
|
| 2006 |
Lahiri SD, Zhang G, Dunaway-Mariano D, Allen KN. Diversification of function in the haloacid dehalogenase enzyme superfamily: The role of the cap domain in hydrolytic phosphorus{single bond}carbon bond cleavage Bioorganic Chemistry. 34: 394-409. PMID 17070898 DOI: 10.1016/J.Bioorg.2006.09.007 |
0.642 |
|
| 2006 |
Chen CC, Han Y, Niu W, Kulakova AN, Howard A, Quinn JP, Dunaway-Mariano D, Herzberg O. Structure and kinetics of phosphonopyruvate hydrolase from Variovorax sp. Pal2: new insight into the divergence of catalysis within the PEP mutase/isocitrate lyase superfamily. Biochemistry. 45: 11491-504. PMID 16981709 DOI: 10.1021/Bi061208L |
0.727 |
|
| 2006 |
Cheng Z, Song F, Shan X, Wei Z, Wang Y, Dunaway-Mariano D, Gong W. Crystal structure of human thioesterase superfamily member 2. Biochemical and Biophysical Research Communications. 349: 172-7. PMID 16934754 DOI: 10.1016/J.Bbrc.2006.08.025 |
0.599 |
|
| 2006 |
Burroughs AM, Allen KN, Dunaway-Mariano D, Aravind L. Evolutionary Genomics of the HAD Superfamily: Understanding the Structural Adaptations and Catalytic Diversity in a Superfamily of Phosphoesterases and Allied Enzymes Journal of Molecular Biology. 361: 1003-1034. PMID 16889794 DOI: 10.1016/J.Jmb.2006.06.049 |
0.498 |
|
| 2006 |
Dai J, Wang L, Allen KN, Radstrom P, Dunaway-Mariano D. Conformational cycling in β-phosphoglucomutase catalysis: Reorientation of the β-D-glucose 1,6-(bis)phosphate intermediate Biochemistry. 45: 7818-7824. PMID 16784233 DOI: 10.1021/Bi060136V |
0.749 |
|
| 2006 |
Silvaggi NR, Zhang C, Lu Z, Dai J, Dunaway-Mariano D, Allen KN. The X-ray crystal structures of human α-phosphomannomutase 1 reveal the structural basis of congenital disorder of glycosylation type 1a Journal of Biological Chemistry. 281: 14918-14926. PMID 16540464 DOI: 10.1074/Jbc.M601505200 |
0.701 |
|
| 2006 |
Song F, Zhuang Z, Finci L, Dunaway-Mariano D, Kniewel R, Buglino JA, Solorzano V, Wu J, Lima CD. Structure, function, and mechanism of the phenylacetate pathway hot dog-fold thioesterase PaaI. The Journal of Biological Chemistry. 281: 11028-38. PMID 16464851 DOI: 10.1074/Jbc.M513896200 |
0.739 |
|
| 2006 |
Lin Y, Lusin JD, Ye D, Dunaway-Mariano D, Ames JB. Examination of the structure, stability, and catalytic potential in the engineered phosphoryl carrier domain of pyruvate phosphate dikinase. Biochemistry. 45: 1702-11. PMID 16460017 DOI: 10.1021/Bi051816L |
0.606 |
|
| 2006 |
Tremblay LW, Dunaway-Mariano D, Allen KN. Structure and activity analyses of Escherichia coli K-12 NagD provide insight into the evolution of biochemical function in the haloalkanoic acid dehalogenase superfamily Biochemistry. 45: 1183-1193. PMID 16430214 DOI: 10.1021/Bi051842J |
0.483 |
|
| 2006 |
Lu X, Li L, Wu R, Feng X, Li Z, Yang H, Wang C, Guo H, Galkin A, Herzberg O, Mariano PS, Martin BM, Dunaway-Mariano D. Kinetic analysis of Pseudomonas aeruginosa arginine deiminase mutants and alternate substrates provides insight into structural determinants of function. Biochemistry. 45: 1162-72. PMID 16430212 DOI: 10.1021/Bi051591E |
0.674 |
|
| 2006 |
Wu J, Xu D, Lu X, Wang C, Guo H, Dunaway-Mariano D. Contributions of long-range electrostatic interactions to 4-chlorobenzoyl-CoA dehalogenase catalysis: a combined theoretical and experimental study. Biochemistry. 45: 102-12. PMID 16388585 DOI: 10.1021/Bi051477W |
0.617 |
|
| 2005 |
Teplyakov A, Liu S, Lu Z, Howard A, Dunaway-Mariano D, Herzberg O. Crystal structure of the petal death protein from carnation flower. Biochemistry. 44: 16377-84. PMID 16342930 DOI: 10.1021/Bi051779Y |
0.65 |
|
| 2005 |
Lu Z, Feng X, Song L, Han Y, Kim A, Herzberg O, Woodson WR, Martin BM, Mariano PS, Dunaway-Mariano D. Diversity of function in the isocitrate lyase enzyme superfamily: the Dianthus caryophyllus petal death protein cleaves alpha-keto and alpha-hydroxycarboxylic acids. Biochemistry. 44: 16365-76. PMID 16342929 DOI: 10.1021/Bi051776L |
0.647 |
|
| 2005 |
Lu X, Li L, Feng X, Wu Y, Dunaway-Mariano D, Engen JR, Mariano PS. L-canavanine is a time-controlled mechanism-based inhibitor of Pseudomonas aeruginosa arginine deiminase. Journal of the American Chemical Society. 127: 16412-3. PMID 16305225 DOI: 10.1021/Ja056226P |
0.519 |
|
| 2005 |
Galkin A, Lu X, Dunaway-Mariano D, Herzberg O. Crystal structures representing the Michaelis complex and the thiouronium reaction intermediate of Pseudomonas aeruginosa arginine deiminase. The Journal of Biological Chemistry. 280: 34080-7. PMID 16091358 DOI: 10.1074/Jbc.M505471200 |
0.616 |
|
| 2005 |
Zhang G, Dai J, Wang L, Dunaway-Mariano D, Tremblay LW, Allen KN. Catalytic cycling in β-phosphoglucomutase: A kinetic and structural analysis Biochemistry. 44: 9404-9416. PMID 15996095 DOI: 10.1021/Bi050558P |
0.743 |
|
| 2005 |
Lu Z, Dunaway-Mariano D, Allen KN. HAD superfamily phosphotransferase substrate diversification: Structure and function analysis of HAD subclass UB sugar phosphatase BT4131 Biochemistry. 44: 8684-8696. PMID 15952775 DOI: 10.1021/Bi050009J |
0.668 |
|
| 2005 |
Tremblay LW, Zhang G, Dai J, Dunaway-Mariano D, Allen KN. Chemical confirmation of a pentavalent phosphorane in complex with β-phosphoglucomutase Journal of the American Chemical Society. 127: 5298-5299. PMID 15826149 DOI: 10.1021/Ja0509073 |
0.682 |
|
| 2005 |
Willis MA, Song F, Zhuang Z, Krajewski W, Chalamasetty VR, Reddy P, Howard A, Dunaway-Mariano D, Herzberg O. Structure of YciI from Haemophilus influenzae (HI0828) reveals a ferredoxin-like alpha/beta-fold with a histidine/aspartate centered catalytic site. Proteins. 59: 648-52. PMID 15779043 DOI: 10.1002/Prot.20411 |
0.666 |
|
| 2005 |
Liu S, Lu Z, Han Y, Melamud E, Dunaway-Mariano D, Herzberg O. Crystal structures of 2-methylisocitrate lyase in complex with product and with isocitrate inhibitor provide insight into lyase substrate specificity, catalysis and evolution. Biochemistry. 44: 2949-62. PMID 15723538 DOI: 10.1021/Bi0479712 |
0.701 |
|
| 2005 |
Dong J, Luo L, Dunaway-Mariano D, Carey PR. Raman evidence for product binding to the enzyme W137F 4-chlorobenzoyl-CoA dehalogenase in two conformational states Journal of Raman Spectroscopy. 36: 320-325. DOI: 10.1002/Jrs.1325 |
0.621 |
|
| 2004 |
Xu D, Wei Y, Wu J, Dunaway-Mariano D, Guo H, Cui Q, Gao J. QM/MM studies of the enzyme-catalyzed dechlorination of 4-chlorobenzoyl-CoA provide insight into reaction energetics. Journal of the American Chemical Society. 126: 13649-58. PMID 15493922 DOI: 10.1021/Ja0460211 |
0.624 |
|
| 2004 |
Peisach E, Selengut JD, Dunaway-Mariano D, Allen KN. X-ray crystal structure of the hypothetical phosphotyrosine phosphatase MDP-1 of the haloacid dehalogenase superfamily Biochemistry. 43: 12770-12779. PMID 15461449 DOI: 10.1021/Bi0490688 |
0.514 |
|
| 2004 |
Allen KN, Dunaway-Mariano D. Phosphoryl group transfer: Evolution of a catalytic scaffold Trends in Biochemical Sciences. 29: 495-503. PMID 15337123 DOI: 10.1016/J.Tibs.2004.07.008 |
0.406 |
|
| 2004 |
Gulick AM, Lu X, Dunaway-Mariano D. Crystal structure of 4-chlorobenzoate:CoA ligase/synthetase in the unliganded and aryl substrate-bound states. Biochemistry. 43: 8670-9. PMID 15236575 DOI: 10.1021/Bi049384M |
0.663 |
|
| 2004 |
Lu X, Galkin A, Herzberg O, Dunaway-Mariano D. Arginine deiminase uses an active-site cysteine in nucleophilic catalysis of L-arginine hydrolysis. Journal of the American Chemical Society. 126: 5374-5. PMID 15113205 DOI: 10.1021/Ja049543P |
0.612 |
|
| 2004 |
Zhang G, Morais MC, Dai J, Zhang W, Dunaway-Mariano D, Allen KN. Investigation of Metal Ion Binding in Phosphonoacetaldehyde Hydrolase Identifies Sequence Markers for Metal-Activated Enzymes of the HAD Enzyme Superfamily Biochemistry. 43: 4990-4997. PMID 15109258 DOI: 10.1021/Bi036309N |
0.723 |
|
| 2004 |
Liu S, Lu Z, Han Y, Jia Y, Howard A, Dunaway-Mariano D, Herzberg O. Conformational flexibility of PEP mutase. Biochemistry. 43: 4447-53. PMID 15078090 DOI: 10.1021/Bi036255H |
0.67 |
|
| 2004 |
Lahiri SD, Zhang G, Dai J, Dunaway-Mariano D, Allen KN. Analysis of the Substrate Specificity Loop of the HAD Superfamily Cap Domain Biochemistry. 43: 2812-2820. PMID 15005616 DOI: 10.1021/Bi0356810 |
0.729 |
|
| 2004 |
Zhuang Z, Song F, Takami H, Dunaway-Mariano D. The BH1999 protein of Bacillus halodurans C-125 is gentisyl-coenzyme A thioesterase. Journal of Bacteriology. 186: 393-9. PMID 14702308 DOI: 10.1128/Jb.186.2.393-399.2004 |
0.706 |
|
| 2004 |
Morais MC, Zhang G, Zhang W, Olsen DB, Dunaway-Mariano D, Allen KN. X-ray Crystallographic and Site-directed Mutagenesis Analysis of the Mechanism of Schiff-base Formation in Phosphonoacetaldehyde Hydrolase Catalysis Journal of Biological Chemistry. 279: 9353-9361. PMID 14670958 DOI: 10.1074/Jbc.M312345200 |
0.622 |
|
| 2003 |
Zhang G, Allen KN, Dunaway-Mariano D. Enzymatic synthesis of radiolabeled phosphonoacetaldehyde Analytical Biochemistry. 322: 233-237. PMID 14596832 DOI: 10.1016/J.Ab.2003.08.016 |
0.603 |
|
| 2003 |
Thoden JB, Zhuang Z, Dunaway-Mariano D, Holden HM. The structure of 4-hydroxybenzoyl-CoA thioesterase from arthrobacter sp. strain SU. The Journal of Biological Chemistry. 278: 43709-16. PMID 12907670 DOI: 10.1074/Jbc.M308198200 |
0.668 |
|
| 2003 |
Zhang G, Dai J, Lu Z, Dunaway-Mariano D. The phosphonopyruvate decarboxylase from Bacteroides fragilis. The Journal of Biological Chemistry. 278: 41302-8. PMID 12904299 DOI: 10.1074/Jbc.M305976200 |
0.761 |
|
| 2003 |
Dong J, Lu X, Wei Y, Luo L, Dunaway-Mariano D, Carey PR. The strength of dehalogenase-substrate hydrogen bonding correlates with the rate of Meisenheimer intermediate formation. Biochemistry. 42: 9482-90. PMID 12899635 DOI: 10.1021/Bi0347656 |
0.755 |
|
| 2003 |
Zhuang Z, Gartemann KH, Eichenlaub R, Dunaway-Mariano D. Characterization of the 4-hydroxybenzoyl-coenzyme A thioesterase from Arthrobacter sp. strain SU. Applied and Environmental Microbiology. 69: 2707-11. PMID 12732540 DOI: 10.1128/Aem.69.5.2707-2711.2003 |
0.579 |
|
| 2003 |
Lahiri SD, Zhang G, Dunaway-Mariano D, Allen KN. The pentacovalent phosphorus intermediate of a phosphoryl transfer reaction Science. 299: 2067-2071. PMID 12637673 DOI: 10.1126/Science.1082710 |
0.605 |
|
| 2002 |
Zhang G, Mazurkie AS, Dunaway-Mariano D, Allen KN. Kinetic evidence for a substrate-induced fit in phosphonoacetaldehyde hydrolase catalysis Biochemistry. 41: 13370-13377. PMID 12416981 DOI: 10.1021/Bi026388N |
0.629 |
|
| 2002 |
Zhuang Z, Song F, Zhang W, Taylor K, Archambault A, Dunaway-Mariano D, Dong J, Carey PR. Kinetic, Raman, NMR, and site-directed mutagenesis studies of the Pseudomonas sp. strain CBS3 4-hydroxybenzoyl-CoA thioesterase active site. Biochemistry. 41: 11152-60. PMID 12220180 DOI: 10.1021/Bi0262303 |
0.738 |
|
| 2002 |
Liu S, Lu Z, Jia Y, Dunaway-Mariano D, Herzberg O. Dissociative phosphoryl transfer in PEP mutase catalysis: structure of the enzyme/sulfopyruvate complex and kinetic properties of mutants. Biochemistry. 41: 10270-6. PMID 12162742 DOI: 10.1021/Bi026024V |
0.638 |
|
| 2002 |
Kim AD, Baker AS, Dunaway-Mariano D, Metcalf WW, Wanner BL, Martin BM. The 2-aminoethylphosphonate-specific transaminase of the 2-aminoethylphosphonate degradation pathway. Journal of Bacteriology. 184: 4134-40. PMID 12107130 DOI: 10.1128/Jb.184.15.4134-4140.2002 |
0.413 |
|
| 2002 |
Lahiri SD, Zhang G, Dunaway-Mariano D, Allen KN. Caught in the act: The structure of phosphorylated β-phosphoglucomutase from Lactococcus lactis Biochemistry. 41: 8351-8359. PMID 12081483 DOI: 10.1021/Bi0202373 |
0.583 |
|
| 2002 |
Dong J, Carey PR, Wei Y, Luo L, Lu X, Liu RQ, Dunaway-Mariano D. Raman evidence for Meisenheimer complex formation in the hydrolysis reactions of 4-fluorobenzoyl- and 4-nitrobenzoyl-coenzyme A catalyzed by 4-chlorobenzoyl-coenzyme A dehalogenase. Biochemistry. 41: 7453-63. PMID 12044179 DOI: 10.1021/Bi020186+ |
0.773 |
|
| 2002 |
Thoden JB, Holden HM, Zhuang Z, Dunaway-Mariano D. X-ray crystallographic analyses of inhibitor and substrate complexes of wild-type and mutant 4-hydroxybenzoyl-CoA thioesterase. The Journal of Biological Chemistry. 277: 27468-76. PMID 11997398 DOI: 10.1074/Jbc.M203904200 |
0.692 |
|
| 2002 |
Zhuang Z, Song F, Martin BM, Dunaway-Mariano D. The YbgC protein encoded by the ybgC gene of the tol-pal gene cluster of Haemophilus influenzae catalyzes acyl-coenzyme A thioester hydrolysis. Febs Letters. 516: 161-3. PMID 11959124 DOI: 10.1016/S0014-5793(02)02533-4 |
0.652 |
|
| 2002 |
Lewandowicz A, Rudzinski J, Luo L, Dunaway-Mariano D, Paneth P. Determination of the chlorine kinetic isotope effect on the 4-chlorobenzoyl-CoA dehalogenase-catalyzed nucleophilic aromatic substitution. Archives of Biochemistry and Biophysics. 398: 249-52. PMID 11831856 DOI: 10.1006/Abbi.2001.2722 |
0.581 |
|
| 2002 |
Lahiri SD, Zhang G, Radstrom P, Dunaway-Mariano D, Allen KN. Crystallization and preliminary X-ray diffraction studies of β-phosphoglucomutase from Lactococcus lactus Acta Crystallographica Section D: Biological Crystallography. 58: 324-326. PMID 11807265 DOI: 10.1107/S0907444901019989 |
0.443 |
|
| 2002 |
Herzberg O, Chen CC, Liu S, Tempczyk A, Howard A, Wei M, Ye D, Dunaway-Mariano D. Pyruvate site of pyruvate phosphate dikinase: crystal structure of the enzyme-phosphonopyruvate complex, and mutant analysis. Biochemistry. 41: 780-7. PMID 11790099 DOI: 10.1021/Bi011799+ |
0.677 |
|
| 2001 |
Luo L, Taylor KL, Xiang H, Wei Y, Zhang W, Dunaway-Mariano D. Role of active site binding interactions in 4-chlorobenzoyl-coenzyme A dehalogenase catalysis. Biochemistry. 40: 15684-92. PMID 11747444 DOI: 10.1021/Bi011536F |
0.766 |
|
| 2001 |
Zhang W, Wei Y, Luo L, Taylor KL, Yang G, Dunaway-Mariano D, Benning MM, Holden HM. Histidine 90 function in 4-chlorobenzoyl-coenzyme a dehalogenase catalysis. Biochemistry. 40: 13474-82. PMID 11695894 DOI: 10.1021/Bi0114426 |
0.738 |
|
| 2001 |
Wei M, Ye D, Dunaway-Mariano D. Investigation of the role of the domain linkers in separate site catalysis by Clostridium symbiosum pyruvate phosphate dikinase. Biochemistry. 40: 13466-73. PMID 11695893 DOI: 10.1021/Bi0113061 |
0.63 |
|
| 2001 |
Ye D, Wei M, McGuire M, Huang K, Kapadia G, Herzberg O, Martin BM, Dunaway-Mariano D. Investigation of the catalytic site within the ATP-grasp domain of Clostridium symbiosum pyruvate phosphate dikinase. The Journal of Biological Chemistry. 276: 37630-9. PMID 11468288 DOI: 10.1074/Jbc.M105631200 |
0.673 |
|
| 2000 |
Wei M, Li Z, Ye D, Herzberg O, Dunaway-Mariano D. Identification of domain-domain docking sites within Clostridium symbiosum pyruvate phosphate dikinase by amino acid replacement. The Journal of Biological Chemistry. 275: 41156-65. PMID 10995759 DOI: 10.1074/Jbc.M006149200 |
0.642 |
|
| 2000 |
Morais MC, Zhang W, Baker AS, Zhang G, Dunaway-Mariano D, Allen KN. The crystal structure of bacillus cereus phosphonoacetaldehyde hydrolase: insight into catalysis of phosphorus bond cleavage and catalytic diversification within the HAD enzyme superfamily. Biochemistry. 39: 10385-96. PMID 10956028 DOI: 10.1021/Bi001171J |
0.653 |
|
| 2000 |
Morais MC, Baker AS, Dunaway-Mariano D, Allen KN. Crystallization and preliminary crystallographic analysis of phosphonoacetaldehyde hydrolase. Acta Crystallographica. Section D, Biological Crystallography. 56: 206-9. PMID 10666607 DOI: 10.1107/S0907444999015899 |
0.31 |
|
| 2000 |
Dong J, Luo L, Liang PH, Dunaway-Mariano D, Carey PR. Raman difference spectroscopic studies of dithiobenzoyl substrate and product analogs binding to the enzyme dehalogenase: π-electron polarization is prevented by the C=O to C=S substitution Journal of Raman Spectroscopy. 31: 365-371. DOI: 10.1002/1097-4555(200005)31:5<365::Aid-Jrs516>3.0.Co;2-L |
0.639 |
|
| 1999 |
Jia Y, Lu Z, Huang K, Herzberg O, Dunaway-Mariano D. Insight into the mechanism of phosphoenolpyruvate mutase catalysis derived from site-directed mutagenesis studies of active site residues. Biochemistry. 38: 14165-73. PMID 10571990 DOI: 10.1021/Bi990771J |
0.613 |
|
| 1999 |
Dunaway-Mariano D. Intermediates and energetics in pyruvate phosphate dikinase Methods in Enzymology. 308: 149-176. PMID 10507004 DOI: 10.1016/S0076-6879(99)08009-X |
0.405 |
|
| 1999 |
Xiang H, Luo L, Taylor KL, Dunaway-Mariano D. Interchange of catalytic activity within the 2-enoyl-coenzyme A hydratase/isomerase superfamily based on a common active site template. Biochemistry. 38: 7638-52. PMID 10387003 DOI: 10.1021/Bi9901432 |
0.651 |
|
| 1999 |
Huang K, Li Z, Jia Y, Dunaway-Mariano D, Herzberg O. Helix swapping between two alpha/beta barrels: crystal structure of phosphoenolpyruvate mutase with bound Mg(2+)-oxalate. Structure (London, England : 1993). 7: 539-48. PMID 10378273 DOI: 10.1016/S0969-2126(99)80070-7 |
0.384 |
|
| 1999 |
Xiang H, Dong J, Carey PR, Dunaway-Mariano D. Product catalyzes the deamidation of D145N dehalogenase to produce the wild-type enzyme Biochemistry. 38: 4207-4213. PMID 10194337 DOI: 10.1021/Bi982670B |
0.458 |
|
| 1999 |
Dong J, Xiang H, Luo L, Dunaway-Mariano D, Carey PR. Modulating electron density in the bound product, 4-hydroxybenzoyl-CoA, by mutations in 4-chlorobenzoyl-CoA dehalogenase near the 4-hydroxy group. Biochemistry. 38: 4198-206. PMID 10194336 DOI: 10.1021/Bi982668K |
0.617 |
|
| 1998 |
Benning MM, Wesenberg G, Liu R, Taylor KL, Dunaway-Mariano D, Holden HM. The three-dimensional structure of 4-hydroxybenzoyl-CoA thioesterase from Pseudomonas sp. Strain CBS-3. The Journal of Biological Chemistry. 273: 33572-9. PMID 9837940 DOI: 10.1074/Jbc.273.50.33572 |
0.443 |
|
| 1998 |
McGuire M, Huang K, Kapadia G, Herzberg O, Dunaway-Mariano D. Location of the phosphate binding site within Clostridium symbiosum pyruvate phosphate dikinase. Biochemistry. 37: 13463-74. PMID 9753432 DOI: 10.1021/Bi980920I |
0.466 |
|
| 1998 |
Baker AS, Ciocci MJ, Metcalf WW, Kim J, Babbitt PC, Wanner BL, Martin BM, Dunaway-Mariano D. Insights into the mechanism of catalysis by the P-C bond-cleaving enzyme phosphonoacetaldehyde hydrolase derived from gene sequence analysis and mutagenesis. Biochemistry. 37: 9305-15. PMID 9649311 DOI: 10.1021/Bi972677D |
0.469 |
|
| 1998 |
Kim A, Kim J, Martin BM, Dunaway-Mariano D. Isolation and characterization of the carbon-phosphorus bond-forming enzyme phosphoenolpyruvate mutase from the mollusk Mytilus edulis Journal of Biological Chemistry. 273: 4443-4448. PMID 9468496 DOI: 10.1074/Jbc.273.8.4443 |
0.447 |
|
| 1997 |
Chang KH, Xiang H, Dunaway-Mariano D. Acyl-adenylate motif of the acyl-adenylate/thioester-forming enzyme superfamily: A site-directed mutagenesis study with the Pseudomonas sp. Strain CBS3 4-chlorobenzoate:coenzyme A ligase Biochemistry. 36: 15650-15659. PMID 9398293 DOI: 10.1021/Bi971262P |
0.452 |
|
| 1997 |
Clarkson J, Tonge PJ, Taylor KL, Dunaway-Mariano D, Carey PR. Raman study of the polarizing forces promoting catalysis in 4-chlorobenzoate-CoA dehalogenase. Biochemistry. 36: 10192-9. PMID 9254617 DOI: 10.1021/Bi970941X |
0.372 |
|
| 1997 |
Taylor KL, Xiang H, Liu RQ, Yang G, Dunaway-Mariano D. Investigation of substrate activation by 4-chlorobenzoyl-coenzyme A dehalogenase. Biochemistry. 36: 1349-61. PMID 9063883 DOI: 10.1021/Bi962765I |
0.492 |
|
| 1996 |
Chang KH, Dunaway-Mariano D. Determination of the chemical pathway for 4-chlorobenzoate:coenzyme A ligase catalysis Biochemistry. 35: 13478-13484. PMID 8873617 DOI: 10.1021/Bi961284W |
0.403 |
|
| 1996 |
Yang G, Liu RQ, Taylor KL, Xiang H, Price J, Dunaway-Mariano D. Identification of active site residues essential to 4-chlorobenzoyl-coenzyme A dehalogenase catalysis by chemical modification and site directed mutagenesis. Biochemistry. 35: 10879-85. PMID 8718880 DOI: 10.1021/Bi9609533 |
0.521 |
|
| 1996 |
McGuire M, Carroll LJ, Yankie L, Thrall SH, Dunaway-Mariano D, Herzberg O, Jayaram B, Haley BH. Determination of the nucleotide binding site within Clostridium symbiosum pyruvate phosphate dikinase by photoaffinity labeling, site-directed mutagenesis, and structural analysis. Biochemistry. 35: 8544-52. PMID 8679615 DOI: 10.1021/Bi960275K |
0.446 |
|
| 1996 |
Benning MM, Taylor KL, Liu R-Q, Yang G, Xiang H, Wesenberg G, Dunaway-Mariano D, Holden HM. Structure of 4-chlorobenzoyl coenzyme A dehalogenase determined to 1.8 A resolution: an enzyme catalyst generated via adaptive mutation. Biochemistry. 35: 8103-9. PMID 8679561 DOI: 10.1021/Bi960768P |
0.513 |
|
| 1996 |
Herzberg O, Chen CC, Kapadia G, McGuire M, Carroll LJ, Noh SJ, Dunaway-Mariano D. Swiveling-domain mechanism for enzymatic phosphotransfer between remote reaction sites. Proceedings of the National Academy of Sciences of the United States of America. 93: 2652-7. PMID 8610096 DOI: 10.1073/Pnas.93.7.2652 |
0.477 |
|
| 1996 |
Kim J, Dunaway-Mariano D. Phosphoenolpyruvate mutase catalysis of phosphoryl transfer in phosphoenolpyruvate: Kinetics and mechanism of phosphorus-carbon bond formation Biochemistry. 35: 4628-4635. PMID 8605214 DOI: 10.1021/Bi952944K |
0.412 |
|
| 1995 |
Xu Y, McGuire M, Dunaway-Mariano D, Martin BM. Separate site catalysis by pyruvate phosphate dikinase as revealed by deletion mutants. Biochemistry. 34: 2195-202. PMID 7857931 DOI: 10.1021/Bi00007A013 |
0.445 |
|
| 1995 |
Yankie L, Xu Y, Dunaway-Mariano D. Location of the catalytic site for phosphoenolpyruvate formation within the primary structure of Clostridium symbiosum pyruvate phosphate dikinase. 2. Site-directed mutagenesis of an essential arginine contained within an apparent P-loop Biochemistry. 34: 2188-2194. PMID 7857930 DOI: 10.1021/Bi00007A012 |
0.484 |
|
| 1995 |
Xu Y, Yankie L, Shen L, Jung YS, Mariano PS, Dunaway-Mariano D, Martin BM. Location of the catalytic site for phosphoenolpyruvate formation within the primary structure of Clostridium symbiosum pyruvate phosphate dikinase. 1. Identification of an essential cysteine by chemical modification with [1-14C]bromopyruvate and site-directed mutagenesis Biochemistry. 34: 2181-2187. PMID 7857929 DOI: 10.1021/Bi00007A011 |
0.457 |
|
| 1995 |
Taylor KL, Liu RQ, Liang PH, Price J, Dunaway-Mariano D, Tonge PJ, Clarkson J, Carey PR. Evidence for electrophilic catalysis in the 4-chlorobenzoyl-CoA dehalogenase reaction: UV, Raman, and 13C-NMR spectral studies of dehalogenase complexes of benzoyl-CoA adducts. Biochemistry. 34: 13881-8. PMID 7577982 DOI: 10.1021/Bi00042A020 |
0.513 |
|
| 1995 |
Liu RQ, Liang PH, Scholten J, Dunaway-Mariano D. Transient state kinetic analysis of the chemical intermediates formed in the enzymatic dehalogenation of 4-chlorobenzoyl coenzyme A Journal of the American Chemical Society. 117: 5003-5004. DOI: 10.1021/Ja00122A035 |
0.335 |
|
| 1994 |
Carroll LJ, Xu Y, Thrall SH, Martin BM, Dunaway-Mariano D. Substrate binding domains in pyruvate phosphate dikinase Biochemistry. 33: 1134-1142. PMID 8110745 DOI: 10.1021/Bi00171A012 |
0.464 |
|
| 1994 |
Thrall SH, Dunaway-Mariano D. Kinetic evidence for separate site catalysis by pyruvate phosphate dikinase Biochemistry. 33: 1103-1107. PMID 8110741 DOI: 10.1021/Bi00171A008 |
0.386 |
|
| 1994 |
Mehl A, Xu Y, Dunaway-Mariano D. Energetics of pyruvate phosphate dikinase catalysis Biochemistry. 33: 1093-1102. PMID 8110740 DOI: 10.1021/Bi00171A007 |
0.407 |
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| 1994 |
Yang G, Liang PH, Dunaway-Mariano D. Evidence for nucleophilic catalysis in the aromatic substitution reaction catalyzed by (4-chlorobenzoyl)coenzyme a dehalogenase Biochemistry. 33: 8527-8531. PMID 8031787 DOI: 10.1021/Bi00194A018 |
0.457 |
|
| 1994 |
Dunaway-Mariano D, Babbitt PC. On the origins and functions of the enzymes of the 4-chlorobenzoate to 4-hydroxybenzoate converting pathway Biodegradation. 5: 259-276. PMID 7765837 DOI: 10.1007/Bf00696464 |
0.416 |
|
| 1993 |
Lu Z, Shorter AL, Dunaway-Mariano D. Investigations of kinase substrate specificity with aqua Rh(III) complexes of adenosine 5'-triphosphate. Biochemistry. 32: 2378-85. PMID 8382948 DOI: 10.1021/Bi00060A032 |
0.561 |
|
| 1993 |
Thrall SH, Mehl AF, Carroll LJ, Dunaway-Mariano D. Characterization of the covalent enzyme intermediates formed during pyruvate phosphate dikinase catalysis Biochemistry. 32: 1803-1809. PMID 8382522 DOI: 10.1021/Bi00058A014 |
0.404 |
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| 1993 |
Liang PH, Yang G, Dunaway-Mariano D. Specificity of 4-chlorobenzoyl coenzyme A dehalogenase catalyzed dehalogenation of halogenated aromatics Biochemistry. 32: 12245-12250. PMID 8218302 DOI: 10.1021/Bi00096A038 |
0.438 |
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| 1992 |
Chang KH, Liang PH, Beck W, Scholten JD, Dunaway-Mariano D. Isolation and characterization of the three polypeptide components of 4- chlorobenzoate dehalogenase from Pseudomonas sp. strain CBS-3 Biochemistry. 31: 5605-5610. PMID 1610806 DOI: 10.1021/Bi00139A025 |
0.365 |
|
| 1992 |
Olsen DB, Hepburn TW, Lee Sl, Martin BM, Mariano PS, Dunaway-Mariano D. Investigation of the substrate binding and catalytic groups of the PC bond cleaving enzyme, phosphonoacetaldehyde hydrolase Archives of Biochemistry and Biophysics. 296: 144-151. PMID 1605625 DOI: 10.1016/0003-9861(92)90556-C |
0.484 |
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| 1992 |
Babbitt PC, Kenyon GL, Martin BM, Charest H, Slyvestre M, Scholten JD, Chang KH, Liang PH, Dunaway-Mariano D. Ancestry of the 4-chlorobenzoate dehalogenase: analysis of amino acid sequence identities among families of acyl:adenyl ligases, enoyl-CoA hydratases/isomerases, and acyl-CoA thioesterases. Biochemistry. 31: 5594-604. PMID 1351742 DOI: 10.1021/Bi00139A024 |
0.329 |
|
| 1992 |
Lee SL, Hepburn TW, Swartz WH, Ammon HL, Mariano PS, Dunaway-Mariano D. Stereochemical probe for the mechanism of phosphorus-carbon bond cleavage catalyzed by the Bacillus cereus phosphonoacetaldehyde hydrolase Journal of the American Chemical Society. 114: 7346-7354. DOI: 10.1021/Ja00045A003 |
0.433 |
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| 1991 |
Scholten JD, Chang KH, Babbitt PC, Charest H, Sylvestre M, Dunaway-Mariano D. Novel enzymic hydrolytic dehalogenation of a chlorinated aromatic Science. 253: 182-185. PMID 1853203 DOI: 10.1126/Science.1853203 |
0.441 |
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| 1991 |
McQueney MS, Lee SL, Swartz WH, Ammon HL, Mariano PS, Dunaway-Mariano D. Evidence for an intramolecular, stepwise reaction pathway for PEP phosphomutase catalyzed phosphorus-carbon bond formation The Journal of Organic Chemistry. 56: 7121-7130. DOI: 10.1021/Jo00025A031 |
0.316 |
|
| 1990 |
Pocalyko DJ, Carroll LJ, Martin BM, Babbitt PC, Dunaway-Mariano D. Analysis of sequence homologies in plant and bacterial pyruvate phosphate dikinase, enzyme I of the bacterial phosphoenolpyruvate: Sugar phosphotransferase system and other PEP-utilizing enzymes. Identification of potential catalytic and regulatory motifs Biochemistry. 29: 10757-10765. PMID 2176881 DOI: 10.1021/Bi00500A006 |
0.408 |
|
| 1990 |
Cairoll LJ, Dunaway-Mariano D, Smith CM, Chollet R. Determination of the catalytic pathway of C4-leaf pyruvate, orthophosphate dikinase from maize Febs Letters. 274: 178-180. PMID 2174800 DOI: 10.1016/0014-5793(90)81358-U |
0.485 |
|
| 1990 |
Bowman ED, McQueney MS, Scholten JD, Dunaway-Mariano D. Purification and characterization of the Tetrahymena pyriformis P-C bond forming enzyme phosphoenolpyruvate phosphomutase Biochemistry®. 29: 7059-7063. PMID 2121271 DOI: 10.1021/Bi00482A016 |
0.411 |
|
| 1989 |
Hanley-Trawick S, Carpen ME, Dunaway-Mariano D, Pedersen PL, Hullihen J. Investigation of the substrate structure and metal cofactor requirements of the rat liver mitochondrial ATP synthase/ATPase complex Archives of Biochemistry and Biophysics. 268: 116-123. PMID 2521440 DOI: 10.1016/0003-9861(89)90571-7 |
0.381 |
|
| 1989 |
McQueney MS, Lee SL, Bowman E, Mariano PS, Dunaway-Mariano D. A remarkable pericyclic mechanism for enzyme-catalyzed phosphorus-carbon bond formation [Erratum to document cited in CA112(11):94492t] Journal of the American Chemical Society. 111: 9280-9280. DOI: 10.1021/Ja00208A050 |
0.327 |
|
| 1989 |
McQueney MS, Lee SL, Bowman E, Mariano PS, Dunaway-Mariano D. A remarkable pericyclic mechanism for enzyme-catalyzed phosphorus-carbon bond formation Journal of the American Chemical Society. 111: 6885-6887. DOI: 10.1021/Ja00199A084 |
0.38 |
|
| 1989 |
Carroll LJ, Mehl AF, Dunaway-Mariano D. The mode of triple phosphoryl group transfer in pyruvate phosphate dikinase catalysis. Demonstration of the intermediacy of pyrophosphorylated and phosphorylated enzyme species Journal of the American Chemical Society. 111: 5965-5967. DOI: 10.1021/Ja00197A081 |
0.352 |
|
| 1988 |
Olsen DB, Hepburn TW, Moos M, Mariano PS, Dunaway-Mariano D. Investigation of the Bacillus cereus phosphonoacetaldehyde hydrolase. Evidence for a schiff base mechanism and sequence analysis of an active-site peptide containing the catalytic lysine residue Biochemistry. 27: 2229-2234. PMID 3132206 DOI: 10.1021/Bi00406A063 |
0.439 |
|
| 1988 |
Barry RJ, Bowman E, McQueney M, Dunaway-Mariano D. Elucidation of the 2-aminoethylphosphonate biosynthetic pathway in Tetrahymena pyriformis Biochemical and Biophysical Research Communications. 153: 177-182. PMID 3132161 DOI: 10.1016/S0006-291X(88)81205-1 |
0.332 |
|
| 1988 |
Wang HC, Ciskanik L, Dunaway-Mariano D, von der Saal W, Villafranca JJ. Investigations of the partial reactions catalyzed by pyruvate phosphate dikinase. Biochemistry. 27: 625-33. PMID 2831971 DOI: 10.1021/Bi00402A020 |
0.404 |
|
| 1988 |
Lin I, Dunaway-Mariano D. Synthesis and stereochemical analysis of exchange-inert chromium(III) complexes of adenosine 5′-O-(2-thiodiphosphate), adenosine 5′-O-(2-thiotriphosphate), and adenosine 5′-O-(3-thiotriphosphate). Generation of a new class of chiral enzyme active site probes Journal of the American Chemical Society. 110: 950-956. DOI: 10.1021/Ja00211A040 |
0.3 |
|
| 1988 |
Lu Z, Shorter AL, Lin I, Dunaway-Mariano D. Preparation and configurational analysis of the stereoisomers of .beta.,.gamma.-bidentate Rh(H2O)4ATP and .alpha.,.beta.,.gamma.-tridentate Rh(H2O)3ATP. A new class of enzyme active site probes Inorganic Chemistry. 27: 4135-4139. DOI: 10.1021/Ic00296A012 |
0.365 |
|
| 1987 |
Shorter AL, Haromy TP, Scalzo-Brush T, Knight WB, Dunaway-Mariano D, Sundaralingam M. Structural and biochemical properties of bidentate tetraaquarhodium(III) complexes of inorganic pyrophosphate and adenosine 5'-diphosphate. Biochemistry. 26: 2060-6. PMID 3036218 DOI: 10.1021/Bi00381A040 |
0.39 |
|
| 1987 |
Barry RJ, Dunaway-Mariano D. The kinetic mechanism of yeast inorganic pyrophosphatase Archives of Biochemistry and Biophysics. 259: 196-203. PMID 2825596 DOI: 10.1016/0003-9861(87)90486-3 |
0.433 |
|
| 1986 |
Lin I, Knight WB, Hsueh A, Dunaway-Mariano D. Investigation of the regiospecificity and stereospecificity of proton transfer in the yeast inorganic pyrophosphatase catalyzed reaction. Biochemistry. 25: 4688-92. PMID 3021200 DOI: 10.1021/Bi00364A035 |
0.387 |
|
| 1986 |
Ciskanik L, Dunaway-Mariano D. Inhibition and inactivation of pyruvate phosphate dikinase with cr(III) complexes of adenosine 5′triphosphate and inorganic pyrophosphate Journal of Enzyme Inhibition and Medicinal Chemistry. 1: 113-125. PMID 2854845 DOI: 10.3109/14756368609020110 |
0.416 |
|
| 1984 |
Ting SJ, Dunaway-Mariano D. Investigation of the role of the substrate metal ion in the yeast inorganic pyrophosphatase reaction Febs Letters. 165: 251-253. PMID 6141068 DOI: 10.1016/0014-5793(84)80179-9 |
0.338 |
|
| 1984 |
Haromy TP, Knight WB, Dunaway-Mariano D, Sundaralingam M. Crystal structure and molecular conformation of P1,P2-bidentate tetraammine(methylenediphosphato)cobalt(III) hydrochloride (CoPCP): CoH2P2O6CH2(NH3) 4+Cl- Inorganic Chemistry. 23: 2412-2415. DOI: 10.1021/Ic00184A011 |
0.406 |
|
| 1983 |
Grace S, Dunaway-Mariano D. Examination of the solvent perturbation technique as a method to identify enzyme catalytic groups Biochemistry. 22: 4238-4247. PMID 6354250 DOI: 10.1021/Bi00287A013 |
0.313 |
|
| 1983 |
Knight WB, Ting SJ, Chuang S, Dunaway-Mariano D, Haromy T, Sundaralingam M. Yeast inorganic pyrophosphatase substrate recognition. Archives of Biochemistry and Biophysics. 227: 302-9. PMID 6139092 DOI: 10.1016/0003-9861(83)90374-0 |
0.419 |
|
| 1983 |
Haromy TP, Knight WB, Dunaway-Mariano D, Sundaralingam M. Investigation of the structure, protonation, and reactivity of tetraammine(imidodiphosphato)cobalt(III), a substrate for potato apyrase Biochemistry. 22: 5015-5021. DOI: 10.1021/Bi00290A021 |
0.396 |
|
| 1983 |
Villafranca J, Ransom S, Gibbs E, Knight W, Dunaway-Mariano D. Metalmetal interactions in enzymes: EPR and NMR investigations Inorganica Chimica Acta. 79: 18. DOI: 10.1016/S0020-1693(00)95036-9 |
0.376 |
|
| 1982 |
Haromy TP, Knight WB, Dunaway-Mariano D, Sundaralingam M. X-ray crystallographic and nuclear magnetic resonance spectral studies of the products from the yeast inorganic pyrophosphatase-Co(NH3)4PP reaction. Investigation of the pyrophosphatase reaction mechanism. Biochemistry. 21: 6950-6. PMID 6130786 DOI: 10.1021/Bi00269A051 |
0.415 |
|
| 1981 |
Knight WB, Fitts SW, Dunaway-Mariano D. Investigation of the catalytic mechanism of yeast inorganic pyrophosphatase. Biochemistry. 20: 4079-86. PMID 6116500 DOI: 10.1021/Bi00517A021 |
0.396 |
|
| 1980 |
Dunaway-Mariano D, Cleland WW. Preparation and properties of chromium(III) adenosine 5′-triphosphate, chromium(III) adenosine 5′-diphosphate, and related chromium(III) complexes Biochemistry. 19: 1496-1505. PMID 7053080 DOI: 10.1021/Bi00548A037 |
0.358 |
|
| 1980 |
Dunaway-Mariano D, Cleland WW. Investigations of substrate specificity and reaction mechanism of several kinases using chromium(III) adenosine 5′-triphosphate and chromium(III) adenosine 5′-diphosphate Biochemistry. 19: 1506-1515. PMID 6248105 DOI: 10.1021/Bi00548A038 |
0.381 |
|
| 1978 |
Dunaway-Mariano D, Magill JM. Specificity of nucleoside transport in Neurospora crassa. Journal of Bacteriology. 136: 924-8. PMID 152756 DOI: 10.1128/Jb.136.3.924-928.1978 |
0.689 |
|
| 1978 |
Dunaway-Mariano D, Magill JM. Specificity of nucleoside transport in Neurospora crassa. Journal of Bacteriology. 136: 924-928. DOI: 10.1128/jb.136.3.924-928.1978 |
0.613 |
|
| 1978 |
Mariano PS, Krochmal E, Beamer R, Huesmann PL, Dunaway-Mariano D. General synthetic methods for the preparation of 1-substituted-vinyl-2-pyridones Tetrahedron. 34: 2609-2616. DOI: 10.1016/0040-4020(78)88395-1 |
0.326 |
|
| 1977 |
Mariano PS, Osborn ME, Dunaway-Mariano D, Gunn BC, Pettersen RC. The chemistry of azocines. Intermediates for the synthesis of pyrrolizidines Journal of Organic Chemistry. 42: 2903-2910. DOI: 10.1021/Jo00437A027 |
0.315 |
|
| 1976 |
Dunaway-Mariano D. Nucleoside phosphorothioates-I. Thiophosphorylation of nucleosides with phosphorus thioxy-anions Tetrahedron. 32: 2991-2996. DOI: 10.1016/0040-4020(76)80157-3 |
0.31 |
|
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