Stephen Fringy Richards - Publications

Affiliations: 
Baylor College of Medicine, Houston, TX 
Area:
Gene sequencing

86 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Labbé F, Abdeladhim M, Abrudan J, Araki AS, Araujo RN, Arensburger P, Benoit JB, Brazil RP, Bruno RV, Bueno da Silva Rivas G, Carvalho de Abreu V, Charamis J, Coutinho-Abreu IV, da Costa-Latgé SG, Darby A, ... ... Richards S, et al. Genomic analysis of two phlebotomine sand fly vectors of leishmania from the new and old World. Plos Neglected Tropical Diseases. 17: e0010862. PMID 37043542 DOI: 10.1371/journal.pntd.0010862  0.315
2020 Fuller ZL, Koury SA, Leonard CJ, Young RE, Ikegami K, Westlake J, Richards S, Schaeffer SW, Phadnis N. Extensive Recombination Suppression and Epistatic Selection Causes Chromosome-Wide Differentiation of a Selfish Sex Chromosome in . Genetics. PMID 32732371 DOI: 10.1534/Genetics.120.303460  0.302
2020 Oeyen JP, Baa-Puyoulet P, Benoit JB, Beukeboom LW, Bornberg-Bauer E, Buttstedt A, Calevro F, Cash EI, Chao H, Charles H, Chen MM, Childers C, Cridge AG, Dearden P, Dinh H, ... ... Richards S, et al. Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera. Genome Biology and Evolution. PMID 32442304 DOI: 10.1093/Gbe/Evaa106  0.49
2020 Narita TB, Kawabe Y, Kin K, Gibbs RA, Kuspa A, Muzny DM, Richards S, Strassmann JE, Sucgang R, Worley KC, Schaap P. Loss of the polyketide synthase StlB results in stalk cell overproduction in Polysphondylium violaceum. Genome Biology and Evolution. PMID 32386295 DOI: 10.1093/Gbe/Evaa079  0.395
2020 Sparks ME, Bansal R, Benoit JB, Blackburn MB, Chao H, Chen M, Cheng S, Childers C, Dinh H, Doddapaneni HV, Dugan S, Elpidina EN, Farrow DW, Friedrich M, Gibbs RA, ... ... Richards S, et al. Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest. Bmc Genomics. 21: 227. PMID 32171258 DOI: 10.1186/S12864-020-6510-7  0.423
2020 Thomas GWC, Dohmen E, Hughes DST, Murali SC, Poelchau M, Glastad K, Anstead CA, Ayoub NA, Batterham P, Bellair M, Binford GJ, Chao H, Chen YH, Childers C, Dinh H, ... ... Richards S, et al. Gene content evolution in the arthropods. Genome Biology. 21: 15. PMID 31969194 DOI: 10.1186/S13059-019-1925-7  0.487
2020 Günther R, Richards S. Two New Frog Species of the Genus Copiula Mehely, 1901 (Anura, Microhylidae, Asterophryinae) from Southern Papua New Guinea Russian Journal of Herpetology. 27: 41-53. DOI: 10.30906/1026-2296-2020-27-1-41-53  0.311
2019 Panfilio KA, Vargas Jentzsch IM, Benoit JB, Erezyilmaz D, Suzuki Y, Colella S, Robertson HM, Poelchau MF, Waterhouse RM, Ioannidis P, Weirauch MT, Hughes DST, Murali SC, Werren JH, Jacobs CGC, ... ... Richards S, et al. Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome. Genome Biology. 20: 64. PMID 30935422 DOI: 10.1186/S13059-019-1660-0  0.457
2019 Petersen M, Armisén D, Gibbs RA, Hering L, Khila A, Mayer G, Richards S, Niehuis O, Misof B. Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects. Bmc Evolutionary Biology. 19: 11. PMID 30626321 DOI: 10.1186/S12862-018-1324-9  0.475
2019 Richards S. Arthropod Genome Sequencing and Assembly Strategies. Methods in Molecular Biology (Clifton, N.J.). 1858: 1-14. PMID 30414106 DOI: 10.1007/978-1-4939-8775-7_1  0.452
2019 Bower DS, Lips KR, Amepou Y, Richards S, Dahl C, Nagombi E, Supuma M, Dabek L, Alford RA, Schwarzkopf L, Ziembicki M, Noro JN, Hamidy A, Gillespie GR, Berger L, et al. Island of opportunity: can New Guinea protect amphibians from a globally emerging pathogen? Frontiers in Ecology and the Environment. 17: 348-354. DOI: 10.1002/Fee.2057  0.303
2018 Armisén D, Rajakumar R, Friedrich M, Benoit JB, Robertson HM, Panfilio KA, Ahn SJ, Poelchau MF, Chao H, Dinh H, Doddapaneni HV, Dugan S, Gibbs RA, Hughes DST, Han Y, ... ... Richards S, et al. The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water. Bmc Genomics. 19: 832. PMID 30463532 DOI: 10.1186/S12864-018-5163-2  0.358
2018 Harrison MC, Arning N, Kremer LPM, Ylla G, Belles X, Bornberg-Bauer E, Huylmans AK, Jongepier E, Piulachs MD, Richards S, Schal C. Expansions of key protein families in the German cockroach highlight the molecular basis of its remarkable success as a global indoor pest. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 29998472 DOI: 10.1002/Jez.B.22824  0.384
2018 Lindsey ARI, Kelkar YD, Wu X, Sun D, Martinson EO, Yan Z, Rugman-Jones PF, Hughes DST, Murali SC, Qu J, Dugan S, Lee SL, Chao H, Dinh H, Han Y, ... ... Richards S, et al. Comparative genomics of the miniature wasp and pest control agent Trichogramma pretiosum. Bmc Biology. 16: 54. PMID 29776407 DOI: 10.1186/S12915-018-0520-9  0.433
2018 Richards S. Full disclosure: Genome assembly is still hard. Plos Biology. 16: e2005894. PMID 29689052 DOI: 10.1371/journal.pbio.2005894  0.473
2018 Lewin HA, Robinson GE, Kress WJ, Baker WJ, Coddington J, Crandall KA, Durbin R, Edwards SV, Forest F, Gilbert MTP, Goldstein MM, Grigoriev IV, Hackett KJ, Haussler D, Jarvis ED, ... ... Richards S, et al. Earth BioGenome Project: Sequencing life for the future of life. Proceedings of the National Academy of Sciences of the United States of America. 115: 4325-4333. PMID 29686065 DOI: 10.1073/Pnas.1720115115  0.366
2018 Poynton HC, Hasenbein S, Benoit JB, Sepulveda MS, Poelchau MF, Hughes DST, Murali SC, Chen S, Glastad KM, Goodisman MAD, Werren JH, Vineis JH, Bowen JL, Friedrich M, Jones J, ... ... Richards S, et al. The Toxicogenome of Hyalella azteca: a model for sediment ecotoxicology and evolutionary toxicology. Environmental Science & Technology. PMID 29634279 DOI: 10.1021/Acs.Est.8B00837  0.483
2018 Richards S, Childers A, Childers C. Editorial overview: Insect genomics: Arthropod genomic resources for the 21st century: It only counts if it's in the database! Current Opinion in Insect Science. 25: iv-vii. PMID 29602370 DOI: 10.1016/j.cois.2018.02.015  0.438
2018 Wiegmann BM, Richards S. Genomes of Diptera. Current Opinion in Insect Science. 25: 116-124. PMID 29602357 DOI: 10.1016/J.Cois.2018.01.007  0.526
2018 Harrison MC, Jongepier E, Robertson HM, Arning N, Bitard-Feildel T, Chao H, Childers CP, Dinh H, Doddapaneni H, Dugan S, Gowin J, Greiner C, Han Y, Hu H, Hughes DST, ... ... Richards S, et al. Hemimetabolous genomes reveal molecular basis of termite eusociality. Nature Ecology & Evolution. PMID 29403074 DOI: 10.1038/S41559-017-0459-1  0.473
2018 Schoville SD, Chen YH, Andersson MN, Benoit JB, Bhandari A, Bowsher JH, Brevik K, Cappelle K, Chen MM, Childers AK, Childers C, Christiaens O, Clements J, Didion EM, Elpidina EN, ... ... Richards S, et al. A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae). Scientific Reports. 8: 1931. PMID 29386578 DOI: 10.1038/S41598-018-20154-1  0.5
2017 Saha S, Hosmani PS, Villalobos-Ayala K, Miller S, Shippy T, Flores M, Rosendale A, Cordola C, Bell T, Mann H, DeAvila G, DeAvila D, Moore Z, Buller K, Ciolkevich K, ... ... Richards S, et al. Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community. Database : the Journal of Biological Databases and Curation. 2017. PMID 29220441 DOI: 10.1093/Database/Bax032  0.387
2017 Fuller ZL, Haynes GD, Richards S, Schaeffer SW. Genomics of Natural Populations: Evolutionary Forces that Establish and Maintain Gene Arrangements in Drosophila pseudoobscura. Molecular Ecology. PMID 29055159 DOI: 10.1111/Mec.14381  0.416
2017 Anstead CA, Perry T, Richards S, Korhonen PK, Young ND, Bowles VM, Batterham P, Gasser RB. The Battle Against Flystrike - Past Research and New Prospects Through Genomics. Advances in Parasitology. 98: 227-281. PMID 28942770 DOI: 10.1016/Bs.Apar.2017.03.001  0.411
2017 Pearce SL, Clarke DF, East PD, Elfekih S, Gordon KHJ, Jermiin LS, McGaughran A, Oakeshott JG, Papanicolaou A, Perera OP, Rane RV, Richards S, Tay WT, Walsh TK, Anderson A, et al. Erratum to: Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species. Bmc Biology. 15: 69. PMID 28810920 DOI: 10.1186/S12915-017-0413-3  0.428
2017 Pearce SL, Clarke DF, East PD, Elfekih S, Gordon KHJ, Jermiin LS, McGaughran A, Oakeshott JG, Papanikolaou A, Perera OP, Rane RV, Richards S, Tay WT, Walsh TK, Anderson A, et al. Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species. Bmc Biology. 15: 63. PMID 28756777 DOI: 10.1186/S12915-017-0402-6  0.452
2017 Schwager EE, Sharma PP, Clarke T, Leite DJ, Wierschin T, Pechmann M, Akiyama-Oda Y, Esposito L, Bechsgaard J, Bilde T, Buffry AD, Chao H, Dinh H, Doddapaneni H, Dugan S, ... ... Richards S, et al. The house spider genome reveals an ancient whole-genome duplication during arachnid evolution. Bmc Biology. 15: 62. PMID 28756775 DOI: 10.1186/S12915-017-0399-X  0.508
2017 Eyun SI, Young Soh H, Posavi M, Munro JB, Hughes DST, Murali SC, Qu J, Dugan S, Lee SL, Chao H, Dinh H, Han Y, Doddapaneni H, Worley KC, Muzny DM, ... ... Richards S, et al. Evolutionary History of Chemosensory-Related Gene Families Across the Arthropoda. Molecular Biology and Evolution. PMID 28460028 DOI: 10.1093/Molbev/Msx147  0.388
2017 Gendreau KL, Haney RA, Schwager EE, Wierschin T, Stanke M, Richards S, Garb JE. House spider genome uncovers evolutionary shifts in the diversity and expression of black widow venom proteins associated with extreme toxicity. Bmc Genomics. 18: 178. PMID 28209133 DOI: 10.1186/S12864-017-3551-7  0.43
2017 Papanicolaou A, Schetelig MF, Arensburger P, Atkinson PW, Benoit JB, Bourtzis K, Castañera P, Cavanaugh JP, Chao H, Childers C, Curril I, Dinh H, Doddapaneni H, Dolan A, Dugan S, ... ... Richards S, et al. Erratum to: The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species. Genome Biology. 18: 11. PMID 28100280 DOI: 10.1186/S13059-017-1155-9  0.489
2016 Worley KC, Richards S, Rogers J. The Value of New Genome References. Experimental Cell Research. PMID 28017728 DOI: 10.1016/j.yexcr.2016.12.014  0.475
2016 McKenna DD, Scully ED, Pauchet Y, Hoover K, Kirsch R, Geib SM, Mitchell RF, Waterhouse RM, Ahn SJ, Arsala D, Benoit JB, Blackmon H, Bledsoe T, Bowsher JH, Busch A, ... ... Richards S, et al. Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface. Genome Biology. 17: 227. PMID 27832824 DOI: 10.1186/S13059-016-1088-8  0.467
2016 Papanicolaou A, Schetelig MF, Arensburger P, Atkinson PW, Benoit JB, Bourtzis K, Castañera P, Cavanaugh JP, Chao H, Childers C, Curril I, Dinh H, Doddapaneni H, Dolan A, Dugan S, ... ... Richards S, et al. The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species. Genome Biology. 17: 192. PMID 27659211 DOI: 10.1186/S13059-016-1049-2  0.409
2016 Kolokotronis SO, Foox J, Rosenfeld JA, Brugler MR, Reeves D, Benoit JB, Booth W, Robison G, Steffen M, Sakas Z, Palli SR, Schal C, Richards S, Narechania A, Baker RH, et al. The mitogenome of the bed bug Cimex lectularius (Hemiptera: Cimicidae). Mitochondrial Dna. Part B, Resources. 1: 425-427. PMID 27617305 DOI: 10.1080/23802359.2016.1180268  0.436
2016 Kanost MR, Arrese EL, Cao X, Chen YR, Chellapilla S, Goldsmith MR, Grosse-Wilde E, Heckel DG, Herndon N, Jiang H, Papanicolaou A, Qu J, Soulages JL, Vogel H, Walters J, ... ... Richards S, et al. Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta. Insect Biochemistry and Molecular Biology. PMID 27522922 DOI: 10.1016/J.Ibmb.2016.07.005  0.513
2016 Rane RV, Walsh TK, Pearce SL, Jermiin LS, Gordon KH, Richards S, Oakeshott JG. Are feeding preferences and insecticide resistance associated with the size of detoxifying enzyme families in insect herbivores? Current Opinion in Insect Science. 13: 70-6. PMID 27436555 DOI: 10.1016/j.cois.2015.12.001  0.35
2016 Fuller ZL, Haynes GD, Richards S, Schaeffer SW. Genomics of Natural Populations: How Differentially Expressed Genes Shape the Evolution of Chromosomal Inversions in Drosophila pseudoobscura. Genetics. PMID 27401754 DOI: 10.1534/Genetics.116.191429  0.402
2016 Lindsey AR, Werren JH, Richards S, Stouthamer R. Comparative Genomics of a Parthenogenesis-Inducing Wolbachia Symbiont. G3 (Bethesda, Md.). PMID 27194801 DOI: 10.1534/G3.116.028449  0.462
2016 Newton IL, Clark ME, Kent BN, Bordenstein SR, Qu J, Richards S, Kelkar YD, Werren JH. Comparative genomics of two closely related Wolbachia with different reproductive effects on hosts. Genome Biology and Evolution. PMID 27189996 DOI: 10.1093/Gbe/Evw096  0.434
2016 Hoy MA, Waterhouse RM, Wu K, Estep AS, Ioannidis P, Palmer WJ, Pomerantz AF, Simão FA, Thomas J, Jiggins FM, Murphy TD, Pritham EJ, Robertson HM, Zdobnov EM, Gibbs RA, ... Richards S, et al. Genome sequencing of the phytoseiid predatory mite Metaseiulus occidentalis reveals completely atomised Hox genes and super-dynamic intron evolution. Genome Biology and Evolution. PMID 26951779 DOI: 10.1093/Gbe/Evw048  0.531
2016 Anstead CA, Batterham P, Korhonen PK, Young ND, Hall RS, Bowles VM, Richards S, Scott MJ, Gasser RB. A blow to the fly - Lucilia cuprina draft genome and transcriptome to support advances in biology and biotechnology. Biotechnology Advances. PMID 26944522 DOI: 10.1016/J.Biotechadv.2016.02.009  0.394
2016 Benoit JB, Adelman ZN, Reinhardt K, Dolan A, Poelchau M, Jennings EC, Szuter EM, Hagan RW, Gujar H, Shukla JN, Zhu F, Mohan M, Nelson DR, Rosendale AJ, Derst C, ... ... Richards S, et al. Unique features of a global human ectoparasite identified through sequencing of the bed bug genome. Nature Communications. 7: 10165. PMID 26836814 DOI: 10.1038/Ncomms10165  0.468
2016 Günther R, Richards S, Tjaturadi B. A New Species of the Frog Genus Pseudocallulops from the Foja Mountains in Northwestern New Guinea (Amphibia, Microhylidae) Russian Journal of Herpetology. 23: 63-69. DOI: 10.30906/1026-2296-2016-23-1-63-69  0.309
2016 Liu Y, Murali SC, Harris RA, English AC, Qin X, Skinner E, Richards S, Rogers J, Han Y, Vee V, Wang M, Meng Q, Heaton MP, Smith TPL, Dalrymple BP, et al. P1009 Sheep reference genome sequence updates: Texel improvements and Rambouillet progress Journal of Animal Science. 94: 18-19. DOI: 10.2527/Jas2016.94Supplement418B  0.422
2015 Simakov O, Kawashima T, Marlétaz F, Jenkins J, Koyanagi R, Mitros T, Hisata K, Bredeson J, Shoguchi E, Gyoja F, Yue JX, Chen YC, Freeman RM, Sasaki A, Hikosaka-Katayama T, ... ... Richards S, et al. Hemichordate genomes and deuterostome origins. Nature. PMID 26580012 DOI: 10.1038/Nature16150  0.51
2015 Bechsgaard J, Vanthournout B, Funch P, Vestbo S, Gibbs RA, Richards S, Sanggaard KW, Enghild JJ, Bilde T. Comparative genomic study of arachnid immune systems indicates loss of βGRPs and the IMD pathway. Journal of Evolutionary Biology. PMID 26528622 DOI: 10.1111/Jeb.12780  0.399
2015 Zhao C, Shukle R, Escalante LN, Chen M, Richards S, Stuart JJ. Avirulence Gene Mapping in the Hessian Fly (Mayetiola destructor) Reveals a Protein Phosphatase 2C Effector Gene Family. Journal of Insect Physiology. PMID 26439791 DOI: 10.1016/J.Jinsphys.2015.10.001  0.435
2015 Anstead CA, Korhonen PK, Young ND, Hall RS, Jex AR, Murali SC, Hughes DS, Lee SF, Perry T, Stroehlein AJ, Ansell BR, Breugelmans B, Hofmann A, Qu J, Dugan S, ... ... Richards S, et al. Lucilia cuprina genome unlocks parasitic fly biology to underpin future interventions. Nature Communications. 6: 7344. PMID 26108605 DOI: 10.1038/Ncomms8344  0.454
2015 Richards S, Murali SC. Best Practices in Insect Genome Sequencing: What Works and What Doesn't. Current Opinion in Insect Science. 7: 1-7. PMID 26085980 DOI: 10.1016/j.cois.2015.02.013  0.47
2015 Ostrowski EA, Shen Y, Tian X, Sucgang R, Jiang H, Qu J, Katoh-Kurasawa M, Brock DA, Dinh C, Lara-Garduno F, Lee SL, Kovar CL, Dinh HH, Korchina V, Jackson L, ... ... Richards S, et al. Genomic Signatures of Cooperation and Conflict in the Social Amoeba. Current Biology : Cb. 25: 1661-5. PMID 26051890 DOI: 10.1016/J.Cub.2015.04.059  0.413
2015 Richards S. It's more than stamp collecting: how genome sequencing can unify biological research. Trends in Genetics : Tig. 31: 411-21. PMID 26003218 DOI: 10.1016/j.tig.2015.04.007  0.476
2015 Sadd BM, Barribeau SM, Bloch G, de Graaf DC, Dearden P, Elsik CG, Gadau J, Grimmelikhuijzen CJ, Hasselmann M, Lozier JD, Robertson HM, Smagghe G, Stolle E, Van Vaerenbergh M, Waterhouse RM, ... ... Richards S, et al. The genomes of two key bumblebee species with primitive eusocial organization. Genome Biology. 16: 76. PMID 25908251 DOI: 10.1186/S13059-015-0623-3  0.421
2015 Zhao C, Escalante LN, Chen H, Benatti TR, Qu J, Chellapilla S, Waterhouse RM, Wheeler D, Andersson MN, Bao R, Batterton M, Behura SK, Blankenburg KP, Caragea D, Carolan JC, ... ... Richards S, et al. A massive expansion of effector genes underlies gall-formation in the wheat pest Mayetiola destructor. Current Biology : Cb. 25: 613-20. PMID 25660540 DOI: 10.1016/J.Cub.2014.12.057  0.394
2014 Chipman AD, Ferrier DE, Brena C, Qu J, Hughes DS, Schröder R, Torres-Oliva M, Znassi N, Jiang H, Almeida FC, Alonso CR, Apostolou Z, Aqrawi P, Arthur W, Barna JC, ... ... Richards S, et al. The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima. Plos Biology. 12: e1002005. PMID 25423365 DOI: 10.1371/Journal.Pbio.1002005  0.463
2014 Fuller ZL, Haynes GD, Zhu D, Batterton M, Chao H, Dugan S, Javaid M, Jayaseelan JC, Lee S, Li M, Ongeri F, Qi S, Han Y, Doddapaneni H, Richards S, et al. Evidence for stabilizing selection on codon usage in chromosomal rearrangements of Drosophila pseudoobscura. G3 (Bethesda, Md.). 4: 2433-49. PMID 25326424 DOI: 10.1534/G3.114.014860  0.36
2014 Chen ZX, Sturgill D, Qu J, Jiang H, Park S, Boley N, Suzuki AM, Fletcher AR, Plachetzki DC, FitzGerald PC, Artieri CG, Atallah J, Barmina O, Brown JB, Blankenburg KP, ... ... Richards S, et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Research. 24: 1209-23. PMID 24985915 DOI: 10.1101/Gr.159384.113  0.506
2014 Iannella A, Richards S, Oliver P. A new species of Choerophryne (Anura, Microhylidae) from the central cordillera of Papua New Guinea. Zootaxa. 3753: 483-93. PMID 24869510 DOI: 10.11646/zootaxa.3753.5.6  0.323
2014 Huang W, Massouras A, Inoue Y, Peiffer J, Ràmia M, Tarone AM, Turlapati L, Zichner T, Zhu D, Lyman RF, Magwire MM, Blankenburg K, Carbone MA, Chang K, Ellis LL, ... ... Richards S, et al. Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines. Genome Research. 24: 1193-208. PMID 24714809 DOI: 10.1101/Gr.171546.113  0.437
2014 Sloan DB, Nakabachi A, Richards S, Qu J, Murali SC, Gibbs RA, Moran NA. Parallel histories of horizontal gene transfer facilitated extreme reduction of endosymbiont genomes in sap-feeding insects. Molecular Biology and Evolution. 31: 857-71. PMID 24398322 DOI: 10.1093/Molbev/Msu004  0.462
2013 Evans JD, Brown SJ, Hackett KJJ, Robinson G, Richards S, Lawson D, Elsik C, Coddington J, Edwards O, Emrich S, Gabaldon T, Goldsmith M, Hanes G, Misof B, Muñoz-Torres M, et al. The i5K initiative: Advancing arthropod genomics for knowledge, human health, agriculture, and the environment Journal of Heredity. 104: 595-600. PMID 23940263 DOI: 10.1093/Jhered/Est050  0.46
2013 Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Birol I, Boisvert S, Chapman JA, Chapuis G, Chikhi R, Chitsaz H, Chou WC, Corbeil J, Del Fabbro C, Docking TR, ... ... Richards S, et al. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience. 2: 10. PMID 23870653 DOI: 10.1186/2047-217X-2-10  0.453
2012 de Sá RO, Streicher JW, Sekonyela R, Forlani MC, Loader SP, Greenbaum E, Richards S, Haddad CF. Molecular phylogeny of microhylid frogs (Anura: Microhylidae) with emphasis on relationships among New World genera. Bmc Evolutionary Biology. 12: 241. PMID 23228209 DOI: 10.1186/1471-2148-12-241  0.367
2012 English AC, Richards S, Han Y, Wang M, Vee V, Qu J, Qin X, Muzny DM, Reid JG, Worley KC, Gibbs RA. Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology. Plos One. 7: e47768. PMID 23185243 DOI: 10.1371/Journal.Pone.0047768  0.323
2012 Fondon JW, Martin A, Richards S, Gibbs RA, Mittelman D. Analysis of microsatellite variation in Drosophila melanogaster with population-scale genome sequencing Plos One. 7. PMID 22427938 DOI: 10.1371/Journal.Pone.0033036  0.443
2010 Degnan PH, Leonardo TE, Cass BN, Hurwitz B, Stern D, Gibbs RA, Richards S, Moran NA. Dynamics of genome evolution in facultative symbionts of aphids. Environmental Microbiology. 12: 2060-9. PMID 21966902 DOI: 10.1111/J.1462-2920.2009.02085.X  0.516
2010 Shigenobu S, Richards S, Cree AG, Morioka M, Fukatsu T, Kudo T, Miyagishima S, Gibbs RA, Stern DL, Nakabachi A. A full-length cDNA resource for the pea aphid, Acyrthosiphon pisum Insect Molecular Biology. 19: 23-31. PMID 20482637 DOI: 10.1111/J.1365-2583.2009.00946.X  0.481
2010 Legeai F, Shigenobu S, Gauthier JP, Colbourne J, Rispe C, Collin O, Richards S, Wilson AC, Murphy T, Tagu D. AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome. Insect Molecular Biology. 19: 5-12. PMID 20482635 DOI: 10.1111/J.1365-2583.2009.00930.X  0.421
2010 Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, et al. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science (New York, N.Y.). 327: 343-8. PMID 20075255 DOI: 10.1126/Science.1178028  0.485
2010 OLIVER P, SISTROM M, TJATURADI B, KREY K, RICHARDS S. On the status and relationships of the gecko species Gehyra barea Kopstein 1926, with description of new specimens and a range extension Zootaxa. 2354: 45. DOI: 10.11646/Zootaxa.2354.1.4  0.323
2010 Miller NJ, Richards S, Sappington TW. The prospects for sequencing the western corn rootworm genome Journal of Applied Entomology. 134: 420-428. DOI: 10.1111/j.1439-0418.2009.01448.x  0.488
2009 Hampton OA, Den Hollander P, Miller CA, Delgado DA, Li J, Coarfa C, Harris RA, Richards S, Scherer SE, Muzny DM, Gibbs RA, Lee AV, Milosavljevic A. A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome. Genome Research. 19: 167-77. PMID 19056696 DOI: 10.1101/Gr.080259.108  0.392
2008 Schaeffer SW, Bhutkar A, McAllister BF, Matsuda M, Matzkin LM, O'Grady PM, Rohde C, Valente VL, Aguadé M, Anderson WW, Edwards K, Garcia AC, Goodman J, Hartigan J, Kataoka E, ... ... Richards S, et al. Polytene chromosomal maps of 11 Drosophila species: the order of genomic scaffolds inferred from genetic and physical maps. Genetics. 179: 1601-55. PMID 18622037 DOI: 10.1534/Genetics.107.086074  0.373
2008 Lorenzen MD, Gnirke A, Margolis J, Garnes J, Campbell M, Stuart JJ, Aggarwal R, Richards S, Park Y, Beeman RW. The maternal-effect, selfish genetic element Medea is associated with a composite Tc1 transposon. Proceedings of the National Academy of Sciences of the United States of America. 105: 10085-9. PMID 18621706 DOI: 10.1073/Pnas.0800444105  0.368
2008 Richards S, Gibbs RA, Weinstock GM, Brown SJ, Denell R, Beeman RW, Gibbs R, Beeman RW, Brown SJ, Bucher G, Friedrich M, Grimmelikhuijzen CJ, Klingler M, Lorenzen M, ... Richards S, ... ... Richards S, ... ... Richards S, ... ... Richards S, et al. The genome of the model beetle and pest Tribolium castaneum. Nature. 452: 949-55. PMID 18362917 DOI: 10.1038/Nature06784  0.456
2008 Park Y, Aikins J, Wang LJ, Beeman RW, Oppert B, Lord JC, Brown SJ, Lorenzen MD, Richards S, Weinstock GM, Gibbs RA. Analysis of transcriptome data in the red flour beetle, Tribolium castaneum. Insect Biochemistry and Molecular Biology. 38: 380-6. PMID 18342244 DOI: 10.1016/J.Ibmb.2007.09.008  0.459
2007 Dunning Hotopp JC, Clark ME, Oliveira DC, Foster JM, Fischer P, Muñoz Torres MC, Giebel JD, Kumar N, Ishmael N, Wang S, Ingram J, Nene RV, Shepard J, Tomkins J, Richards S, et al. Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes. Science (New York, N.Y.). 317: 1753-6. PMID 17761848 DOI: 10.1126/Science.1142490  0.45
2006 Savard J, Tautz D, Richards S, Weinstock GM, Gibbs RA, Werren JH, Tettelin H, Lercher MJ. Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects. Genome Research. 16: 1334-8. PMID 17065606 DOI: 10.1101/Gr.5204306  0.433
2005 Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K, Clawson H, Spieth J, Hillier LW, Richards S, Weinstock GM, Wilson RK, Gibbs RA, Kent WJ, Miller W, et al. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Research. 15: 1034-50. PMID 16024819 DOI: 10.1101/Gr.3715005  0.48
2005 Ross MT, Grafham DV, Coffey AJ, Scherer S, McLay K, Muzny D, Platzer M, Howell GR, Burrows C, Bird CP, Frankish A, Lovell FL, Howe KL, Ashurst JL, Fulton RS, ... ... Richards S, et al. The DNA sequence of the human X chromosome. Nature. 434: 325-37. PMID 15772651 DOI: 10.1038/Nature03440  0.308
2005 Richards S, Liu Y, Bettencourt BR, Hradecky P, Letovsky S, Nielsen R, Thornton K, Hubisz MJ, Chen R, Meisel RP, Couronne O, Hua S, Smith MA, Zhang P, Liu J, et al. Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. Genome Research. 15: 1-18. PMID 15632085 DOI: 10.1101/Gr.3059305  0.621
2003 Richards S. How is the Drosophila research community making use of the genome sequence Genome Biology. 4: 319-319. PMID 12734006 DOI: 10.1186/Gb-2003-4-5-319  0.476
2002 Celniker SE, Wheeler DA, Kronmiller B, Carlson JW, Halpern A, Patel S, Adams M, Champe M, Dugan SP, Frise E, Hodgson A, George RA, Hoskins RA, Laverty T, Muzny DM, ... ... Richards S, et al. Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence. Genome Biology. 3: RESEARCH0079. PMID 12537568 DOI: 10.1186/Gb-2002-3-12-Research0079  0.449
2002 Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, ... ... Richards S, et al. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99: 16899-903. PMID 12477932 DOI: 10.1073/Pnas.242603899  0.385
2001 Yager J, Richards S, Hekmat-Scafe DS, Hurd DD, Sundaresan V, Caprette DR, Saxton WM, Carlson JR, Stern M. Control of Drosophila perineurial glial growth by interacting neurotransmitter-mediated signaling pathways. Proceedings of the National Academy of Sciences of the United States of America. 98: 10445-50. PMID 11517334 DOI: 10.1073/Pnas.191107698  0.641
2000 Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF, George RA, Lewis SE, Richards S, Ashburner M, Henderson SN, et al. The genome sequence of Drosophila melanogaster. Science (New York, N.Y.). 287: 2185-95. PMID 10731132 DOI: 10.1126/Science.287.5461.2185  0.512
1991 Verkerk AJ, Pieretti M, Sutcliffe JS, Fu YH, Kuhl DP, Pizzuti A, Reiner O, Richards S, Victoria MF, Zhang FP. Identification of a gene (FMR-1) containing a CGG repeat coincident with a breakpoint cluster region exhibiting length variation in fragile X syndrome. Cell. 65: 905-14. PMID 1710175 DOI: 10.1016/0092-8674(91)90397-H  0.311
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