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Samik Ghosh, Ph.D. - Publications

Affiliations: 
2007 Computer Science & Engineering University of Texas at Arlington, Arlington, TX, United States 
Area:
Computer Science, Bioinformatics Biology, System Science Engineering
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26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Nock R, Polouliakh N, Nielsen F, Oka K, Connell CR, Heimhofer C, Shibanai K, Ghosh S, Aisaki KI, Kitajima S, Kanno J, Akama T, Kitano H. A Geometric Clustering Tool (AGCT) to robustly unravel the inner cluster structures of time-series gene expressions. Plos One. 15: e0233755. PMID 32628677 DOI: 10.1371/Journal.Pone.0233755  0.304
2017 Caron E, Roncagalli R, Hase T, Wolski WE, Choi M, Menoita MG, Durand S, García-Blesa A, Fierro-Monti I, Sajic T, Heusel M, Weiss T, Malissen M, Schlapbach R, Collins BC, ... Ghosh S, et al. Precise Temporal Profiling of Signaling Complexes in Primary Cells Using SWATH Mass Spectrometry. Cell Reports. 18: 3219-3226. PMID 28355572 DOI: 10.1016/J.Celrep.2017.03.019  0.309
2015 Das SK, Chatterjee A, Ghosh SK, Raha S. An integrated campaign for investigation of winter-time continental haze over Indo-Gangetic Basin and its radiative effects. The Science of the Total Environment. 533: 370-382. PMID 26172604 DOI: 10.1016/J.Scitotenv.2015.06.085  0.306
2014 Matsuoka Y, Funahashi A, Ghosh S, Kitano H. Modeling and simulation using CellDesigner. Methods in Molecular Biology (Clifton, N.J.). 1164: 121-45. PMID 24927840 DOI: 10.1007/978-1-4939-0805-9_11  0.352
2014 Ghosh S, Sahoo N, Sajanlal PR, Sarangi NK, Ramesh N, Panda T, Pradeep T, Das SK. Anomalous subsurface thermal behavior in tissue mimics upon near infrared irradiation mediated photothermal therapy. Journal of Biomedical Nanotechnology. 10: 405-14. PMID 24730236 DOI: 10.1166/Jbn.2014.1720  0.328
2014 Asai Y, Abe T, Oka H, Okita M, Hagihara K, Ghosh S, Matsuoka Y, Kurachi Y, Nomura T, Kitano H. A Versatile Platform for Multilevel Modeling of Physiological Systems: SBML-PHML Hybrid Modeling and Simulation Advanced Biomedical Engineering. 3: 50-58. DOI: 10.14326/Abe.3.50  0.307
2013 Ghosh S, Matsuoka Y, Asai Y, Hsin KY, Kitano H. Toward an integrated software platform for systems pharmacology. Biopharmaceutics & Drug Disposition. 34: 508-26. PMID 24150748 DOI: 10.1002/Bdd.1875  0.311
2012 Ghosh S, Ghosh P, Basu K, Das SK, Daefler S. A Discrete Event Based Stochastic Simulation Platform for âÂÂIn silicoâ Study of Molecular-level Cellular Dynamics Journal of Biotechnology & Biomaterials. DOI: 10.4172/2155-952X.S6-001  0.691
2011 Ghosh S, Das T, Chakraborty S, Das SK. Predicting DNA-mediated drug delivery in interior carcinoma using electromagnetically excited nanoparticles. Computers in Biology and Medicine. 41: 771-9. PMID 21752360 DOI: 10.1016/J.Compbiomed.2011.06.013  0.38
2010 Ghosh P, Ghosh S, Basu K, Das SK, Zhang C. Discrete diffusion models to study the effects of Mg2+ concentration on the PhoPQ signal transduction system. Bmc Genomics. 11: S3. PMID 21143785 DOI: 10.1186/1471-2164-11-S3-S3  0.713
2010 Ghosh S, Matsuoka Y, Kitano H. Connecting the dots: role of standardization and technology sharing in biological simulation. Drug Discovery Today. 15: 1024-31. PMID 20934535 DOI: 10.1016/J.Drudis.2010.10.001  0.342
2010 Kaizu K, Ghosh S, Matsuoka Y, Moriya H, Shimizu-Yoshida Y, Kitano H. A comprehensive molecular interaction map of the budding yeast cell cycle. Molecular Systems Biology. 6: 415. PMID 20865008 DOI: 10.1038/Msb.2010.73  0.319
2010 Matsuoka Y, Ghosh S, Kikuchi N, Kitano H. Payao: a community platform for SBML pathway model curation. Bioinformatics (Oxford, England). 26: 1381-3. PMID 20371497 DOI: 10.1093/Bioinformatics/Btq143  0.307
2010 Chatterjee S, Das SK, Chakravarty R, Chakrabarti A, Ghosh S, Guha AK. Interaction of malathion, an organophosphorus pesticide with Rhizopus oryzae biomass. Journal of Hazardous Materials. 174: 47-53. PMID 19783095 DOI: 10.1016/j.jhazmat.2009.09.014  0.311
2009 Ghosh S, Das SK, Guha AK, Sanyal AK. Adsorption behavior of lindane on Rhizopus oryzae biomass: physico-chemical studies. Journal of Hazardous Materials. 172: 485-90. PMID 19632776 DOI: 10.1016/j.jhazmat.2009.06.156  0.317
2009 Matsuoka Y, Ghosh S, Kitano H. Consistent design schematics for biological systems: standardization of representation in biological engineering. Journal of the Royal Society, Interface / the Royal Society. 6: S393-404. PMID 19493898 DOI: 10.1098/Rsif.2009.0046.Focus  0.335
2009 Ghosh P, Ghosh S, Basu K, Das S. Parametric modeling of protein-DNA binding kinetics: A discrete event based simulation approach Discrete Applied Mathematics. 157: 2395-2415. DOI: 10.1016/J.Dam.2008.06.046  0.699
2008 Ghosh P, Ghosh S, Basu K, Das SK. Holding time estimation for reactions in stochastic event-based simulation of complex biological systems Simulation Modelling Practice and Theory. 16: 1615-1639. DOI: 10.1016/J.Simpat.2007.09.002  0.705
2007 Ghosh S, Young DL, Gadkar KG, Wennerberg L, Basu K. Towards optimal virtual patients: an online adaptive control approach. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2007: 3292-5. PMID 18002699 DOI: 10.1109/IEMBS.2007.4353033  0.575
2007 Ghosh P, Ghosh S, Basu K, Das SK. A markov model based analysis of stochastic biochemical systems. Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 6: 121-32. PMID 17951818  0.691
2007 Skalli H, Ghosh S, Das SK, Lenzini L, Conti M. Channel Assignment Strategies for Multiradio Wireless Mesh Networks: Issues and Solutions Ieee Communications Magazine. 45: 86-95. DOI: 10.1109/Mcom.2007.4378326  0.417
2006 Das SK, Chatterjee D, Mukherjee S, Grimes A, Shen Y, Smith M, Ghosh S. Decrease in brain POMC mRNA expression and onset of obesity in guinea pigs exposed to 2-chloroethyl ethyl sulfide, a mustard analogue. Biochemical and Biophysical Research Communications. 339: 55-8. PMID 16289378 DOI: 10.1016/j.bbrc.2005.11.002  0.312
2005 Ghosh S, Basu K, Das SK. An architecture for next-generation radio access networks Ieee Network. 19: 35-42. DOI: 10.1109/Mnet.2005.1509950  0.633
2003 Chattopadhyay B, Ghosh S, Gangopadhyay PK, Das SK, Roy T, Sinha KK, Jha DK, Mukherjee SC, Chakraborty A, Singhal BS, Bhattacharya AK, Bhattacharyya NP. Modulation of age at onset in Huntington's disease and spinocerebellar ataxia type 2 patients originated from eastern India. Neuroscience Letters. 345: 93-6. PMID 12821179  0.48
1994 Mukherjee S, Ghosh S, Rodgers L, Nayyar T, Desai U, Das SK. Toxic effects of fatty acid anilides on the oxygen defense systems of guinea pig lungs and erythrocytes. Journal of Biochemical Toxicology. 9: 1-7. PMID 8151627 DOI: 10.1002/JBT.2570090102  0.304
1991 Ghosh S, Oten PW, Mukherjee S, Das SK. Study of properties of cholinephosphotransferase from fetal guinea pig lung mitochondria and microsomes. Molecular and Cellular Biochemistry. 101: 157-66. PMID 1650426 DOI: 10.1007/BF00229532  0.305
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