Zhihao Zhuang, Ph.D. - Publications

2003 University of New Mexico, Albuquerque, NM, United States 
Biochemistry, Microbiology Biology

56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Tencer AH, Liang Q, Zhuang Z. Divergence in Ubiquitin Interaction and Catalysis among the Ubiquitin-Specific Protease Family Deubiquitinating Enzymes. Biochemistry. PMID 27501351 DOI: 10.1021/acs.biochem.6b00033  1
2016 Yang K, Li G, Gong P, Gui W, Yuan L, Zhuang Z. Chemical Protein Ubiquitylation with Preservation of the Native Cysteine Residues. Chembiochem : a European Journal of Chemical Biology. PMID 27113245 DOI: 10.1002/cbic.201600042  1
2014 Dexheimer TS, Rosenthal AS, Luci DK, Liang Q, Villamil MA, Chen J, Sun H, Kerns EH, Simeonov A, Jadhav A, Zhuang Z, Maloney DJ. Synthesis and structure-activity relationship studies of N-benzyl-2-phenylpyrimidin-4-amine derivatives as potent USP1/UAF1 deubiquitinase inhibitors with anticancer activity against nonsmall cell lung cancer. Journal of Medicinal Chemistry. 57: 8099-110. PMID 25229643 DOI: 10.1021/jm5010495  1
2014 Liang Q, Dexheimer TS, Zhang P, Rosenthal AS, Villamil MA, You C, Zhang Q, Chen J, Ott CA, Sun H, Luci DK, Yuan B, Simeonov A, Jadhav A, Xiao H, ... ... Zhuang Z, et al. A selective USP1-UAF1 inhibitor links deubiquitination to DNA damage responses. Nature Chemical Biology. 10: 298-304. PMID 24531842 DOI: 10.1038/nchembio.1455  1
2014 Zhuang Z, Yang J. A class of generalized pseudo-splines Journal of Inequalities and Applications. 2014. DOI: 10.1186/1029-242X-2014-359  0.64
2013 Burkhart RA, Peng Y, Norris ZA, Tholey RM, Talbott VA, Liang Q, Ai Y, Miller K, Lal S, Cozzitorto JA, Witkiewicz AK, Yeo CJ, Gehrmann M, Napper A, Winter JM, ... ... Zhuang Z, et al. Mitoxantrone targets human ubiquitin-specific peptidase 11 (USP11) and is a potent inhibitor of pancreatic cancer cell survival Molecular Cancer Research. 11: 901-911. PMID 23696131 DOI: 10.1158/1541-7786.MCR-12-0699  1
2013 Li L, Zhuang Z. Anticancer effects of statins and application in prevention and treatment of esophageal cancer Chinese Journal of Gastroenterology. 18: 493-496. DOI: 10.3969/j.issn.1008-7125.2013.08.012  0.36
2013 Vo E, Zhuang Z. Development of a new test system to determine penetration of multi-walled carbon nanotubes through filtering facepiece respirators Journal of Aerosol Science. 61: 50-59. DOI: 10.1016/j.jaerosci.2013.01.011  0.64
2012 Villamil MA, Liang Q, Chen J, Choi YS, Hou S, Lee KH, Zhuang Z. Serine phosphorylation is critical for the activation of ubiquitin-specific protease 1 and its interaction with WD40-repeat protein UAF1. Biochemistry. 51: 9112-23. PMID 23116119 DOI: 10.1021/bi300845s  1
2012 Song F, Thoden JB, Zhuang Z, Latham J, Trujillo M, Holden HM, Dunaway-Mariano D. The catalytic mechanism of the hotdog-fold enzyme superfamily 4-hydroxybenzoyl-CoA thioesterase from Arthrobacter sp. strain SU. Biochemistry. 51: 7000-16. PMID 22873756 DOI: 10.1021/bi301059m  0.36
2012 Dong J, Zhuang Z, Song F, Dunaway-Mariano D, Carey PR. A Thioester Substrate Binds to the Enzyme Arthrobacter Thioesterase in Two Ionization States; Evidence from Raman Difference Spectroscopy. Journal of Raman Spectroscopy : Jrs. 43: 65-71. PMID 22347769 DOI: 10.1002/jrs.3002  1
2012 Zhuang Z, Latham J, Song F, Zhang W, Trujillo M, Dunaway-Mariano D. Investigation of the catalytic mechanism of the hotdog-fold enzyme superfamily Pseudomonas sp. strain CBS3 4-hydroxybenzoyl-CoA thioesterase. Biochemistry. 51: 786-94. PMID 22208697 DOI: 10.1021/bi2013917  1
2011 Chen J, Dexheimer TS, Ai Y, Liang Q, Villamil MA, Inglese J, Maloney DJ, Jadhav A, Simeonov A, Zhuang Z. Selective and cell-active inhibitors of the USP1/ UAF1 deubiquitinase complex reverse cisplatin resistance in non-small cell lung cancer cells. Chemistry & Biology. 18: 1390-400. PMID 22118673 DOI: 10.1016/j.chembiol.2011.08.014  1
2011 Tsutakawa SE, Van Wynsberghe AW, Freudenthal BD, Weinacht CP, Gakhar L, Washington MT, Zhuang Z, Tainer JA, Ivanov I. Solution X-ray scattering combined with computational modeling reveals multiple conformations of covalently bound ubiquitin on PCNA. Proceedings of the National Academy of Sciences of the United States of America. 108: 17672-7. PMID 22006297 DOI: 10.1073/pnas.1110480108  1
2011 Bozza WP, Zhuang Z. Biochemical characterization of a multidomain deubiquitinating enzyme Ubp15 and the regulatory role of its terminal domains. Biochemistry. 50: 6423-32. PMID 21710968 DOI: 10.1021/bi200529z  1
2011 Ai Y, Wang J, Johnson RE, Haracska L, Prakash L, Zhuang Z. A novel ubiquitin binding mode in the S. cerevisiae translesion synthesis DNA polymerase η. Molecular Biosystems. 7: 1874-82. PMID 21483899 DOI: 10.1039/c0mb00355g  1
2011 Zhuang Z, Li Z. A 7-bit 16-MS/s low-power CMOS pipeline ADC International Conference On Communication Technology Proceedings, Icct. 1082-1085. DOI: 10.1109/ICCT.2011.6158048  0.4
2011 Qin Y, Zhao H, Zhuang Z. Spectral-domain optical coherence tomography system with thermal light source Hsi-An Chiao Tung Ta Hsueh/Journal of Xi'An Jiaotong University. 45: 68-71.  0.36
2010 Zhuang Z, Ai Y. Processivity factor of DNA polymerase and its expanding role in normal and translesion DNA synthesis. Biochimica Et Biophysica Acta. 1804: 1081-93. PMID 19576301 DOI: 10.1016/j.bbapap.2009.06.018  1
2009 Manosas M, Spiering MM, Zhuang Z, Benkovic SJ, Croquette V. Coupling DNA unwinding activity with primer synthesis in the bacteriophage T4 primosome. Nature Chemical Biology. 5: 904-12. PMID 19838204 DOI: 10.1038/nchembio.236  1
2009 Li Z, Song F, Zhuang Z, Dunaway-Mariano D, Anderson KS. Monitoring enzyme catalysis in the multimeric state: direct observation of Arthrobacter 4-hydroxybenzoyl-coenzyme A thioesterase catalytic complexes using time-resolved electrospray ionization mass spectrometry. Analytical Biochemistry. 394: 209-16. PMID 19635449 DOI: 10.1016/j.ab.2009.07.030  1
2009 Nelson SW, Zhuang Z, Spiering MM, Benkovic SJ. T4 phage replisome Viral Genome Replication. 337-364. DOI: 10.1007/b135974_16  1
2008 DU LL, Wang LM, Zhuang Z. [Measurement and analysis of human head-face dimensions]. Zhonghua Lao Dong Wei Sheng Zhi Ye Bing Za Zhi = Zhonghua Laodong Weisheng Zhiyebing Zazhi = Chinese Journal of Industrial Hygiene and Occupational Diseases. 26: 266-70. PMID 18727867  0.64
2008 Zhuang Z, Johnson RE, Haracska L, Prakash L, Prakash S, Benkovic SJ. Regulation of polymerase exchange between Poleta and Poldelta by monoubiquitination of PCNA and the movement of DNA polymerase holoenzyme. Proceedings of the National Academy of Sciences of the United States of America. 105: 5361-6. PMID 18385374 DOI: 10.1073/pnas.0801310105  1
2008 Willis MA, Zhuang Z, Song F, Howard A, Dunaway-Mariano D, Herzberg O. Structure of YciA from Haemophilus influenzae (HI0827), a hexameric broad specificity acyl-coenzyme A thioesterase. Biochemistry. 47: 2797-805. PMID 18260643 DOI: 10.1021/bi702336d  1
2008 Zhuang Z, Song F, Zhao H, Li L, Cao J, Eisenstein E, Herzberg O, Dunaway-Mariano D. Divergence of function in the hot dog fold enzyme superfamily: the bacterial thioesterase YciA. Biochemistry. 47: 2789-96. PMID 18247525 DOI: 10.1021/bi702334h  1
2008 Zhuang Z, Viscusi D. A new approach to developing digital 3-d headforms Sae Technical Papers. DOI: 10.4271/2008-01-1878  0.64
2007 Song F, Zhuang Z, Dunaway-Mariano D. Structure-activity analysis of base and enzyme-catalyzed 4-hydroxybenzoyl coenzyme A hydrolysis. Bioorganic Chemistry. 35: 1-10. PMID 16962159 DOI: 10.1016/j.bioorg.2006.07.002  1
2006 Smiley RD, Zhuang Z, Benkovic SJ, Hammes GG. Single-molecule investigation of the T4 bacteriophage DNA polymerase holoenzyme: multiple pathways of holoenzyme formation. Biochemistry. 45: 7990-7. PMID 16800624 DOI: 10.1021/bi0603322  1
2006 Zhuang Z, Berdis AJ, Benkovic SJ. An alternative clamp loading pathway via the T4 clamp loader gp44/62-DNA complex. Biochemistry. 45: 7976-89. PMID 16800623 DOI: 10.1021/bi0601205  1
2006 Zhuang Z, Yoder BL, Burgers PM, Benkovic SJ. The structure of a ring-opened proliferating cell nuclear antigen-replication factor C complex revealed by fluorescence energy transfer. Proceedings of the National Academy of Sciences of the United States of America. 103: 2546-51. PMID 16476998 DOI: 10.1073/pnas.0511263103  1
2006 Song F, Zhuang Z, Finci L, Dunaway-Mariano D, Kniewel R, Buglino JA, Solorzano V, Wu J, Lima CD. Structure, function, and mechanism of the phenylacetate pathway hot dog-fold thioesterase PaaI. The Journal of Biological Chemistry. 281: 11028-38. PMID 16464851 DOI: 10.1074/jbc.M513896200  1
2005 Zhuang Z, Bradtmiller B. Head-and-face anthropometric survey of U.S. respirator users Journal of Occupational and Environmental Hygiene. 2: 567-576. PMID 16223715 DOI: 10.1080/15459620500324727  0.64
2005 Xi J, Zhang Z, Zhuang Z, Yang J, Spiering MM, Hammes GG, Benkovic SJ. Interaction between the T4 helicase loading protein (gp59) and the DNA polymerase (gp43): unlocking of the gp59-gp43-DNA complex to initiate assembly of a fully functional replisome. Biochemistry. 44: 7747-56. PMID 15909989 DOI: 10.1021/bi047296w  1
2005 Yang J, Xi J, Zhuang Z, Benkovic SJ. The oligomeric T4 primase is the functional form during replication. The Journal of Biological Chemistry. 280: 25416-23. PMID 15897200 DOI: 10.1074/jbc.M501847200  1
2005 Willis MA, Song F, Zhuang Z, Krajewski W, Chalamasetty VR, Reddy P, Howard A, Dunaway-Mariano D, Herzberg O. Structure of YciI from Haemophilus influenzae (HI0828) reveals a ferredoxin-like alpha/beta-fold with a histidine/aspartate centered catalytic site. Proteins. 59: 648-52. PMID 15779043 DOI: 10.1002/prot.20411  1
2005 Xi J, Zhuang Z, Zhang Z, Selzer T, Spiering MM, Hammes GG, Benkovic SJ. Interaction between the T4 helicase-loading protein (gp59) and the DNA polymerase (gp43): a locking mechanism to delay replication during replisome assembly. Biochemistry. 44: 2305-18. PMID 15709743 DOI: 10.1021/bi0479508  1
2004 Zhuang Z, Spiering MM, Berdis AJ, Trakselis MA, Benkovic SJ. 'Screw-cap' clamp loader proteins that thread. Nature Structural & Molecular Biology. 11: 580-1. PMID 15221017 DOI: 10.1038/nsmb0704-580  1
2004 Yang J, Zhuang Z, Roccasecca RM, Trakselis MA, Benkovic SJ. The dynamic processivity of the T4 DNA polymerase during replication. Proceedings of the National Academy of Sciences of the United States of America. 101: 8289-94. PMID 15148377 DOI: 10.1073/pnas.0402625101  1
2004 Zhuang Z, Song F, Takami H, Dunaway-Mariano D. The BH1999 protein of Bacillus halodurans C-125 is gentisyl-coenzyme A thioesterase. Journal of Bacteriology. 186: 393-9. PMID 14702308 DOI: 10.1128/JB.186.2.393-399.2004  1
2004 Wang Z, Zhuang L, Zhuang Z, Wang X. Shot cut detection method based on motion information Jisuanji Gongcheng/Computer Engineering. 30: 15.  0.64
2004 Yang J, Wang L, Zhuang Z. Research on nonlinear blind source separation algorithm using higher order statistics and Quantum Genetic Algorithm Moshi Shibie Yu Rengong Zhineng/Pattern Recognition and Artificial Intelligence. 17: 41.  0.64
2003 Thoden JB, Zhuang Z, Dunaway-Mariano D, Holden HM. The structure of 4-hydroxybenzoyl-CoA thioesterase from arthrobacter sp. strain SU. The Journal of Biological Chemistry. 278: 43709-16. PMID 12907670 DOI: 10.1074/jbc.M308198200  1
2003 Zhuang Z, Gartemann KH, Eichenlaub R, Dunaway-Mariano D. Characterization of the 4-hydroxybenzoyl-coenzyme A thioesterase from Arthrobacter sp. strain SU. Applied and Environmental Microbiology. 69: 2707-11. PMID 12732540 DOI: 10.1128/AEM.69.5.2707-2711.2003  1
2003 Yang JA, Li B, Zhuang Z. Multi-universe parallel quantum genetic algorithm and its application to blind source separation Proceedings of 2003 International Conference On Neural Networks and Signal Processing, Icnnsp'03. 1: 393-398. DOI: 10.1109/ICNNSP.2003.1279292  0.64
2003 Zhuang Z, Zhang Q, Li L. Simulating airspace method by an axial cavum in the parameters measurement of a Doppler fuze Binggong Xuebao/Acta Armamentarii. 24: 534.  0.36
2003 Xie G, Yang J, Zhuang Z. Research on the neural network model based on quantum double-slit interference experiment Moshi Shibie Yu Rengong Zhineng/Pattern Recognition and Artificial Intelligence. 16: 28.  0.64
2003 Xie G, Li B, Zhuang Z. Theoretical analysis on the implementation of neural computation in quantum systems Dianzi Yu Xinxi Xuebao/Journal of Electronics and Information Technology. 25: 606.  0.64
2002 Zhuang Z, Song F, Zhang W, Taylor K, Archambault A, Dunaway-Mariano D, Dong J, Carey PR. Kinetic, Raman, NMR, and site-directed mutagenesis studies of the Pseudomonas sp. strain CBS3 4-hydroxybenzoyl-CoA thioesterase active site. Biochemistry. 41: 11152-60. PMID 12220180 DOI: 10.1021/bi0262303  1
2002 Thoden JB, Holden HM, Zhuang Z, Dunaway-Mariano D. X-ray crystallographic analyses of inhibitor and substrate complexes of wild-type and mutant 4-hydroxybenzoyl-CoA thioesterase. The Journal of Biological Chemistry. 277: 27468-76. PMID 11997398 DOI: 10.1074/jbc.M203904200  1
2002 Zhuang Z, Song F, Martin BM, Dunaway-Mariano D. The YbgC protein encoded by the ybgC gene of the tol-pal gene cluster of Haemophilus influenzae catalyzes acyl-coenzyme A thioester hydrolysis. Febs Letters. 516: 161-3. PMID 11959124 DOI: 10.1016/S0014-5793(02)02533-4  1
1999 Hu Q, Wang X, Zhuang Z. Distributed algorithm for multi-region problem in BEM Journal of Computer Science and Technology. 14: 558-564.  0.64
1998 Myers WR, Zhuang Z. Field performance measurements of half-facepiece respirators: developing probability estimates to evaluate the adequacy of an APF of 10. American Industrial Hygiene Association Journal. 59: 796-801. PMID 9830088 DOI: 10.1080/15428119891010983  0.64
1998 Myers WR, Zhuang Z. Field performance measurements of half-facepiece respirators: steel mill operations. American Industrial Hygiene Association Journal. 59: 789-95. PMID 9830087 DOI: 10.1080/15428119891010974  0.64
1996 Myers WR, Zhuang Z, Nelson T. Field performance measurements of half-facepiece respirators--foundry operations. American Industrial Hygiene Association Journal. 57: 166-74. PMID 8615325 DOI: 10.1080/15428119691015106  0.64
1996 Zhuang Z, Myers WR. Field performance measurements of half-facepiece respirators - Paint spraying operations American Industrial Hygiene Association Journal. 57: 50-57.  0.64
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