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Thomas Perkins - Publications

University of Colorado / JILA, Boulder, CO, United States 
Single Molecule Biophysics

200 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Jacobson DR, Perkins TT. Free-energy changes of bacteriorhodopsin point mutants measured by single-molecule force spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33753487 DOI: 10.1073/pnas.2020083118  0.96
2020 Jacobson DR, Perkins TT. Correcting molecular transition rates measured by single-molecule force spectroscopy for limited temporal resolution. Physical Review. E. 102: 022402. PMID 32942397 DOI: 10.1103/Physreve.102.022402  0.96
2020 Yu H, Jacobson DR, Luo H, Perkins TT. Quantifying the Native Energetics Stabilizing Bacteriorhodopsin by Single-Molecule Force Spectroscopy. Physical Review Letters. 125: 068102. PMID 32845671 DOI: 10.1103/Physrevlett.125.068102  0.96
2020 Heenan PR, Wang X, Gooding AR, Cech TR, Perkins TT. Bending and looping of long DNA by Polycomb repressive complex 2 revealed by AFM imaging in liquid. Nucleic Acids Research. PMID 32043141 DOI: 10.1093/Nar/Gkaa073  0.4
2019 Jacobson DR, Uyetake L, Perkins TT. Membrane-Protein Unfolding Intermediates Detected with Enhanced Precision Using a Zigzag Force Ramp. Biophysical Journal. PMID 31882249 DOI: 10.1016/J.Bpj.2019.12.003  0.96
2019 Heenan PR, Perkins TT. Imaging DNA Equilibrated onto Mica in Liquid using Biochemically Relevant Deposition Conditions. Acs Nano. PMID 30938988 DOI: 10.1021/acsnano.8b09234  0.4
2018 Yu H, Heenan PR, Edwards DT, Uyetake L, Perkins TT. Quantifying the Initial Unfolding of Bacteriorhodopsin Reveals Retinal Stabilization. Angewandte Chemie (International Ed. in English). PMID 30556941 DOI: 10.1002/Anie.201812072  0.44
2018 Walder R, Van Patten WJ, Ritchie DB, Montange RK, Miller TW, Woodside MT, Perkins TT. High-Precision Single-Molecule Characterization of the Folding of an HIV RNA Hairpin by Atomic Force Microscopy. Nano Letters. PMID 30234311 DOI: 10.1021/Acs.Nanolett.8B02597  0.48
2018 Heenan PR, Perkins TT. FEATHER: Automated Analysis of Force Spectroscopy Unbinding and Unfolding Data via a Bayesian Algorithm. Biophysical Journal. PMID 30122292 DOI: 10.1016/j.bpj.2018.07.031  0.4
2018 Heenan PR, Yu H, Siewny MGW, Perkins TT. Improved free-energy landscape reconstruction of bacteriorhodopsin highlights local variations in unfolding energy. The Journal of Chemical Physics. 148: 123313. PMID 29604885 DOI: 10.1063/1.5009108  0.4
2017 Walder R, Van Patten WJ, Adhikari A, Perkins TT. Going Vertical to Improve the Accuracy of Atomic Force Microscopy Based Single-Molecule Force Spectroscopy. Acs Nano. PMID 29244486 DOI: 10.1021/acsnano.7b05721  0.48
2017 Van Patten WJ, Walder R, Adhikari A, Okoniewski SR, Ravichandran R, Tinberg CE, Baker D, Perkins TT. Improved Free-Energy Landscape Quantification Illustrated with a Computationally Designed Protein-Ligand Interaction. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 29069529 DOI: 10.1002/Cphc.201701147  0.8
2017 Okoniewski SR, Uyetake L, Perkins TT. Force-activated DNA substrates for probing individual proteins interacting with single-stranded DNA. Nucleic Acids Research. PMID 28977580 DOI: 10.1093/nar/gkx761  0.8
2017 Walder R, LeBlanc MA, Van Patten WJ, Edwards D, Greenberg JA, Adhikari A, Okoniewski SR, Sullan RMA, Rabuka D, Sousa MC, Perkins TT. Rapid Characterization of a Mechanically Labile α-helical Protein Enabled by Efficient Site-Specific Bioconjugation. Journal of the American Chemical Society. PMID 28677396 DOI: 10.1021/Jacs.7B02958  0.8
2017 Yu H, Siewny MG, Edwards DT, Sanders AW, Perkins TT. Hidden dynamics in the unfolding of individual bacteriorhodopsin proteins. Science (New York, N.Y.). 355: 945-950. PMID 28254940 DOI: 10.1126/Science.Aah7124  0.36
2017 Faulk JK, Edwards DT, Bull MS, Perkins TT. Improved Force Spectroscopy Using Focused-Ion-Beam-Modified Cantilevers. Methods in Enzymology. 582: 321-351. PMID 28062041 DOI: 10.1016/Bs.Mie.2016.08.007  0.48
2017 Okoniewski SR, Carter AR, Perkins TT. A Surface-Coupled Optical Trap with 1-bp Precision via Active Stabilization. Methods in Molecular Biology (Clifton, N.J.). 1486: 77-107. PMID 27844426 DOI: 10.1007/978-1-4939-6421-5_4  1
2016 Carter AR, Seaberg MH, Fan HF, Sun G, Wilds CJ, Li HW, Perkins TT. Sequence-dependent nanometer-scale conformational dynamics of individual RecBCD-DNA complexes. Nucleic Acids Research. PMID 27220465 DOI: 10.1093/Nar/Gkw445  1
2016 Vazquez-Prokopec GM, Perkins TA, Waller LA, Lloyd AL, Reiner RC, Scott TW, Kitron U. Coupled Heterogeneities and Their Impact on Parasite Transmission and Control. Trends in Parasitology. PMID 26850821 DOI: 10.1016/J.Pt.2016.01.001  0.04
2016 Edwards DT, Perkins TT. Optimizing force spectroscopy by modifying commercial cantilevers: improved stability, precision, and temporal resolution. Journal of Structural Biology. PMID 26804584 DOI: 10.1016/J.Jsb.2016.01.009  1
2016 van den Berg AK, Perkins TD, Isselhardt ML, Wilmot TR. Growth rates of sugar maple trees tapped for maple syrup production using high-yield sap collection practices Forest Science. 62: 107-114. DOI: 10.5849/forsci.15-019  0.01
2015 Chua EG, Verbrugghe P, Perkins TT, Tay CY. Fucoidans Disrupt Adherence of Helicobacter pylori to AGS Cells In Vitro. Evidence-Based Complementary and Alternative Medicine : Ecam. 2015: 120981. PMID 26604968 DOI: 10.1155/2015/120981  0.08
2015 Ariff A, Wise MJ, Kahler CM, Tay CY, Peters F, Perkins TT, Chang BJ. Novel Moraxella catarrhalis prophages display hyperconserved non-structural genes despite their genomic diversity. Bmc Genomics. 16: 860. PMID 26497500 DOI: 10.1186/S12864-015-2104-1  0.08
2015 Kraemer MU, Perkins TA, Cummings DA, Zakar R, Hay SI, Smith DL, Reiner RC. Big city, small world: density, contact rates, and transmission of dengue across Pakistan. Journal of the Royal Society, Interface / the Royal Society. 12. PMID 26468065 DOI: 10.1098/Rsif.2015.0468  0.08
2015 Edwards DT, Faulk JK, Sanders AW, Bull MS, Walder R, LeBlanc MA, Sousa MC, Perkins TT. Optimizing 1-μs-Resolution Single-Molecule Force Spectroscopy on a Commercial Atomic Force Microscope. Nano Letters. 15: 7091-8. PMID 26421945 DOI: 10.1021/Acs.Nanolett.5B03166  1
2015 Ramachandran P, Palidwor GA, Perkins TJ. BIDCHIPS: bias decomposition and removal from ChIP-seq data clarifies true binding signal and its functional correlates. Epigenetics & Chromatin. 8: 33. PMID 26388941 DOI: 10.1186/S13072-015-0028-2  0.12
2015 Cassar PA, Carpenedo RL, Samavarchi-Tehrani P, Olsen JB, Park CJ, Chang WY, Chen Z, Choey C, Delaney S, Guo H, Guo H, Tanner RM, Perkins TJ, Tenenbaum SA, Emili A, et al. Integrative genomics positions MKRN1 as a novel ribonucleoprotein within the embryonic stem cell gene regulatory network. Embo Reports. 16: 1334-57. PMID 26265008 DOI: 10.15252/Embr.201540974  0.01
2015 Walder R, Paik DH, Bull MS, Sauer C, Perkins TT. Ultrastable measurement platform: sub-nm drift over hours in 3D at room temperature. Optics Express. 23: 16554-64. PMID 26191667 DOI: 10.1364/OE.23.016554  1
2015 He C, Hu C, Hu X, Hu X, Xiao A, Perkins TT, Li H. Direct Observation of the Reversible Two-State Unfolding and Refolding of an α/β Protein by Single-Molecule Atomic Force Microscopy. Angewandte Chemie (International Ed. in English). PMID 26136291 DOI: 10.1002/anie.201502938  0.08
2015 Knight DR, Elliott B, Chang BJ, Perkins TT, Riley TV. Diversity and Evolution in the Genome of Clostridium difficile. Clinical Microbiology Reviews. 28: 721-741. PMID 26085550 DOI: 10.1128/CMR.00127-14  0.08
2015 Achee NL, Gould F, Perkins TA, Reiner RC, Morrison AC, Ritchie SA, Gubler DJ, Teyssou R, Scott TW. A Critical Assessment of Vector Control for Dengue Prevention. Plos Neglected Tropical Diseases. 9: e0003655. PMID 25951103 DOI: 10.1371/Journal.Pntd.0003655  0.04
2015 Lai S, Huang Z, Zhou H, Anders KL, Perkins TA, Yin W, Li Y, Mu D, Chen Q, Zhang Z, Qiu Y, Wang L, Zhang H, Zeng L, Ren X, et al. The changing epidemiology of dengue in China, 1990-2014: a descriptive analysis of 25 years of nationwide surveillance data. Bmc Medicine. 13: 100. PMID 25925417 DOI: 10.1186/S12916-015-0336-1  0.36
2015 Ghadie MA, Japkowicz N, Perkins TJ. Gene selection for the reconstruction of stem cell differentiation trees: a linear programming approach. Bioinformatics (Oxford, England). PMID 25847008 DOI: 10.1093/Bioinformatics/Btv192  0.12
2015 Perkins TJ, Bittar RG, McGillivray JA, Cox II, Stokes MA. Increased premotor cortex activation in high functioning autism during action observation. Journal of Clinical Neuroscience : Official Journal of the Neurosurgical Society of Australasia. 22: 664-9. PMID 25726458 DOI: 10.1016/J.Jocn.2014.10.007  0.01
2015 Bar J, Gorn-Hondermann I, Moretto P, Perkins TJ, Niknejad N, Stewart DJ, Goss GD, Dimitroulakos J. miR Profiling Identifies Cyclin-Dependent Kinase 6 Downregulation as a Potential Mechanism of Acquired Cisplatin Resistance in Non-Small-Cell Lung Carcinoma. Clinical Lung Cancer. PMID 25703099 DOI: 10.1016/J.Cllc.2015.01.008  0.01
2015 Da Cunha V, Davies MR, Douarre PE, Rosinski-Chupin I, Margarit I, Spinali S, Perkins T, Lechat P, Dmytruk N, Sauvage E, Ma L, Romi B, Tichit M, Lopez-Sanchez MJ, Descorps-Declere S, et al. Corrigendum: Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline. Nature Communications. 6: 6108. PMID 25629801 DOI: 10.1038/ncomms7108  0.04
2015 Rhymes J, Jones L, Lapworth DJ, White D, Fenner N, McDonald JE, Perkins TL. Using chemical, microbial and fluorescence techniques to understand contaminant sources and pathways to wetlands in a conservation site. The Science of the Total Environment. 511: 703-10. PMID 25616189 DOI: 10.1016/j.scitotenv.2014.12.085  0.04
2015 Androga GO, McGovern AM, Elliott B, Chang BJ, Perkins TT, Foster NF, Riley TV. Evaluation of the Cepheid Xpert C. difficile/Epi and meridian bioscience illumigene C. difficile assays for detecting Clostridium difficile ribotype 033 strains. Journal of Clinical Microbiology. 53: 973-5. PMID 25520452 DOI: 10.1128/JCM.03297-14  0.08
2015 Premnath PN, Craig SN, Liu S, Anderson EL, Grigoroudis AI, Kontopidis G, Perkins TL, Wyatt MD, Pittman DL, McInnes C. Iterative conversion of cyclin binding groove peptides into druglike CDK inhibitors with antitumor activity. Journal of Medicinal Chemistry. 58: 433-42. PMID 25454794 DOI: 10.1021/Jm5015023  0.04
2015 Kumar N, Mariappan V, Baddam R, Lankapalli AK, Shaik S, Goh KL, Loke MF, Perkins T, Benghezal M, Hasnain SE, Vadivelu J, Marshall BJ, Ahmed N. Comparative genomic analysis of Helicobacter pylori from Malaysia identifies three distinct lineages suggestive of differential evolution. Nucleic Acids Research. 43: 324-35. PMID 25452339 DOI: 10.1093/nar/gku1271  0.08
2015 Perkins TN, Peeters PM, Shukla A, Arijs I, Dragon J, Wouters EF, Reynaert NL, Mossman BT. Indications for distinct pathogenic mechanisms of asbestos and silica through gene expression profiling of the response of lung epithelial cells. Human Molecular Genetics. 24: 1374-89. PMID 25351596 DOI: 10.1093/Hmg/Ddu551  0.01
2015 Joosten M, Lindén S, Rossi M, Tay ACY, Skoog E, Padra M, Peters F, Perkins T, Vandamme P, Vann Nieuwerburgh F, D'Herde K, Van den Broeck W, Flahou B, Deforce D, Ducatelle R, et al. Divergence between the highly virulent zoonotic pathogen Helicobacter heilmannii and its closest relative, the low-virulence "Helicobacter ailurogastricus" sp. nov Infection and Immunity. 84: 293-306. DOI: 10.1128/IAI.01300-15.  0.08
2015 Armstrong C, Brown RM, Chaves J, Czerniejewski A, Del Vecchio J, Perkins TK, Rudnicki R, Tauer G. Next generation data harmonization Proceedings of Spie - the International Society For Optical Engineering. 9499. DOI: 10.1117/12.2180458  0.01
2015 Porter L, Slade C, Butt A, Rosier J, Perkins T, Crookes L, Inch A, Slade J, Bassa F, Petzer B, Winkler T, Saija L, Barry J. Partnerships of learning for planning education Who is learning what from whom? The beautiful messiness of learning partnerships: Experiential learning partnerships in Australian and New Zealand higher education planning programmes: Res non verba? rediscovering the social purpose of planning (and the university): The Westfield Action Research Project: At the coalface, Take 2: Lessons from students' critical reflections: Education for “cubed change”: Unsettling planning education through community-engaged teaching and learning: Reflections on the Indigenous Planning Studio Planning Theory and Practice. 16: 409-434. DOI: 10.1080/14649357.2015.1060688  0.01
2015 Kearney S, Perkins T, Kennedy-Clark S. Using self- and peer-assessments for summative purposes: analysing the relative validity of the AASL (Authentic Assessment for Sustainable Learning) model Assessment and Evaluation in Higher Education. DOI: 10.1080/02602938.2015.1039484  0.01
2015 Perkins T, Herráez-Aguilar D, McCrudden G, K?os J, Aoiz FJ, Brouard M. Surface-hopping trajectories for OH(A2Σ+) + Kr: Extension to the 1 A ″ state Journal of Chemical Physics. 142. DOI: 10.1063/1.4916972  0.04
2015 Addeman BT, Kutty S, Perkins TG, Soliman AS, Wiens CN, McCurdy CM, Beaton MD, Hegele RA, McKenzie CA. Validation of volumetric and single-slice MRI adipose analysis using a novel fully automated segmentation method Journal of Magnetic Resonance Imaging. 41: 233-241. DOI: 10.1002/jmri.24526  0.01
2015 He C, Hu C, Hu X, Xiao A, Perkins TT, Li H. Direct Observation of the Reversible Two-State Unfolding and Refolding of an α/β Protein by Single-Molecule Atomic Force Microscopy Angewandte Chemie - International Edition. DOI: 10.1002/anie.201502938  0.08
2015 Grinberg Y, Perkins TJ. State sequence analysis in hidden Markov models Uncertainty in Artificial Intelligence - Proceedings of the 31st Conference, Uai 2015. 336-344.  0.12
2014 Perkins TL, Clements K, Baas JH, Jago CF, Jones DL, Malham SK, McDonald JE. Sediment composition influences spatial variation in the abundance of human pathogen indicator bacteria within an estuarine environment. Plos One. 9: e112951. PMID 25397595 DOI: 10.1371/journal.pone.0112951  0.04
2014 Perkins TJ, Foxall E, Glass L, Edwards R. A scaling law for random walks on networks. Nature Communications. 5: 5121. PMID 25311870 DOI: 10.1038/Ncomms6121  0.12
2014 Perkins TJ, Stokes MA, McGillivray JA, Mussap AJ, Cox IA, Maller JJ, Bittar RG. Increased left hemisphere impairment in high-functioning autism: a tract based spatial statistics study. Psychiatry Research. 224: 119-23. PMID 25159311 DOI: 10.1016/J.Pscychresns.2014.08.003  0.01
2014 Perkins TA, Garcia AJ, Paz-Soldán VA, Stoddard ST, Reiner RC, Vazquez-Prokopec G, Bisanzio D, Morrison AC, Halsey ES, Kochel TJ, Smith DL, Kitron U, Scott TW, Tatem AJ. Theory and data for simulating fine-scale human movement in an urban environment. Journal of the Royal Society, Interface / the Royal Society. 11. PMID 25142528 DOI: 10.1098/Rsif.2014.0642  0.04
2014 Da Cunha V, Davies MR, Douarre PE, Rosinski-Chupin I, Margarit I, Spinali S, Perkins T, Lechat P, Dmytruk N, Sauvage E, Ma L, Romi B, Tichit M, Lopez-Sanchez MJ, Descorps-Declere S, et al. Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline. Nature Communications. 5: 4544. PMID 25088811 DOI: 10.1038/ncomms5544  0.08
2014 Malham SK, Rajko-Nenow P, Howlett E, Tuson KE, Perkins TL, Pallett DW, Wang H, Jago CF, Jones DL, McDonald JE. The interaction of human microbial pathogens, particulate material and nutrients in estuarine environments and their impacts on recreational and shellfish waters. Environmental Science. Processes & Impacts. 16: 2145-55. PMID 25043898 DOI: 10.1039/c4em00031e  0.04
2014 Guerra CA, Reiner RC, Perkins TA, Lindsay SW, Midega JT, Brady OJ, Barker CM, Reisen WK, Harrington LC, Takken W, Kitron U, Lloyd AL, Hay SI, Scott TW, Smith DL. A global assembly of adult female mosquito mark-release-recapture data to inform the control of mosquito-borne pathogens. Parasites & Vectors. 7: 276. PMID 24946878 DOI: 10.1186/1756-3305-7-276  0.04
2014 Sayan M, Shukla A, MacPherson MB, Macura SL, Hillegass JM, Perkins TN, Thompson JK, Beuschel SL, Miller JM, Mossman BT. Extracellular signal-regulated kinase 5 and cyclic AMP response element binding protein are novel pathways inhibited by vandetanib (ZD6474) and doxorubicin in mesotheliomas. American Journal of Respiratory Cell and Molecular Biology. 51: 595-603. PMID 24940987 DOI: 10.1165/Rcmb.2013-0373Tr  0.01
2014 Churnside AB, Perkins TT. Ultrastable atomic force microscopy: improved force and positional stability. Febs Letters. 588: 3621-30. PMID 24801176 DOI: 10.1016/J.Febslet.2014.04.033  1
2014 Palii CG, Vulesevic B, Fraineau S, Pranckeviciene E, Griffith AJ, Chu A, Faralli H, Li Y, McNeill B, Sun J, Perkins TJ, Dilworth FJ, Perez-Iratxeta C, Suuronen EJ, Allan DS, et al. Trichostatin A enhances vascular repair by injected human endothelial progenitors through increasing the expression of TAL1-dependent genes. Cell Stem Cell. 14: 644-57. PMID 24792117 DOI: 10.1016/J.Stem.2014.03.003  0.12
2014 Perkins TT. Ångström-precision optical traps and applications. Annual Review of Biophysics. 43: 279-302. PMID 24773015 DOI: 10.1146/annurev-biophys-042910-155223  1
2014 De Chiara M, Hood D, Muzzi A, Pickard DJ, Perkins T, Pizza M, Dougan G, Rappuoli R, Moxon ER, Soriani M, Donati C. Genome sequencing of disease and carriage isolates of nontypeable Haemophilus influenzae identifies discrete population structure Proceedings of the National Academy of Sciences of the United States of America. 111: 5439-5444. PMID 24706866 DOI: 10.1073/pnas.1403353111  0.08
2014 Phillips JE, Stallknecht DE, Perkins TA, McClure NS, Mead DG. Evolutionary dynamics of West Nile virus in Georgia, 2001-2011. Virus Genes. 49: 132-6. PMID 24691819 DOI: 10.1007/S11262-014-1061-0  0.04
2014 Bull MS, Sullan RM, Li H, Perkins TT. Improved single molecule force spectroscopy using micromachined cantilevers. Acs Nano. 8: 4984-95. PMID 24670198 DOI: 10.1021/nn5010588  1
2014 Liebman KA, Stoddard ST, Reiner RC, Perkins TA, Astete H, Sihuincha M, Halsey ES, Kochel TJ, Morrison AC, Scott TW. Determinants of heterogeneous blood feeding patterns by Aedes aegypti in Iquitos, Peru. Plos Neglected Tropical Diseases. 8: e2702. PMID 24551262 DOI: 10.1371/Journal.Pntd.0002702  0.04
2014 Chadwick H, Brouard M, Chang YP, Eyles CJ, McCrudden G, Perkins T, Seamons SA, K?os J, Alexander MH, Dagdigian PJ, Herráez-Aguilar D, Aoiz FJ. The collisional depolarization of OH(A (2)Σ(+)) and NO(A (2)Σ(+)) with Kr. The Journal of Chemical Physics. 140: 054306. PMID 24511939 DOI: 10.1063/1.4863446  0.04
2014 Li K, Precup D, Perkins TJ. Pooled screening for synergistic interactions subject to blocking and noise Plos One. 9. PMID 24454940 DOI: 10.1371/Journal.Pone.0085864  0.12
2014 Lu W, Wise MJ, Tay CY, Windsor HM, Marshall BJ, Peacock C, Perkins T. Comparative analysis of the full genome of Helicobacter pylori isolate Sahul64 identifies genes of high divergence. Journal of Bacteriology. 196: 1073-83. PMID 24375107 DOI: 10.1128/Jb.01021-13  0.08
2014 Premnath PN, Liu S, Perkins T, Abbott J, Anderson E, McInnes C. Fragment based discovery of arginine isosteres through REPLACE: towards non-ATP competitive CDK inhibitors. Bioorganic & Medicinal Chemistry. 22: 616-22. PMID 24286762 DOI: 10.1016/J.Bmc.2013.10.039  0.04
2014 Hu HH, Wu TW, Yin L, Kim MS, Chia JM, Perkins TG, Gilsanz V. MRI detection of brown adipose tissue with low fat content in newborns with hypothermia Magnetic Resonance Imaging. 32: 107-117. PMID 24239336 DOI: 10.1016/j.mri.2013.10.003  0.01
2014 Guilbert J, Beckage B, Winter JM, Horton RM, Perkins T, Bomblies A. Impacts of projected climate change over the Lake Champlain basin in Vermont Journal of Applied Meteorology and Climatology. 53: 1861-1875. DOI: 10.1175/Jamc-D-13-0338.1  0.01
2014 Berk A, Conforti P, Kennett R, Perkins T, Hawes F, Van Den Bosch J. MODTRAN®6: A major upgrade of the MODTRAN® radiative transfer code Proceedings of Spie - the International Society For Optical Engineering. 9088. DOI: 10.1117/12.2050433  0.01
2014 Nilufar S, Perkins TJ. Learning to detect contours with dynamic programming snakes Proceedings - International Conference On Pattern Recognition. 984-989. DOI: 10.1109/ICPR.2014.179  0.12
2014 Nilufar S, Perkins TJ. Learning a cost function for microscope image segmentation 2014 36th Annual International Conference of the Ieee Engineering in Medicine and Biology Society, Embc 2014. 5506-5509. DOI: 10.1109/EMBC.2014.6944873  0.01
2014 Chadwick H, Brouard M, Perkins T, Aoiz FJ. Collisional depolarisation in electronically excited radicals International Reviews in Physical Chemistry. 33: 79-123. DOI: 10.1080/0144235X.2014.891855  0.04
2014 Leetaru KH, Perkins TK, Rewerts C. Cultural computing at literature scale: Encoding the cultural knowledge of tens of billions of words of academic literature D-Lib Magazine. 20. DOI: 10.1045/september2014-leetaru  0.01
2014 Perkins TL. Dirichlet problems on graphs with ends Journal of Mathematical Analysis and Applications. 420: 1182-1194. DOI: 10.1016/j.jmaa.2014.06.064  0.01
2014 Romberg N, Virdee M, Chamberlain N, Oe T, Schickel JN, Perkins T, Cantaert T, Rachid R, Rosengren S, Palazzo R, Geha R, Cunningham-Rundles C, Meffre E. TNF receptor superfamily member 13b (TNFRSF13B) hemizygosity reveals transmembrane activator and CAML interactor haploinsufficiency at later stages of B-cell development Journal of Allergy and Clinical Immunology. DOI: 10.1016/j.jaci.2015.05.012  0.01
2014 Ponrartana S, Ramos-Platt L, Wren TAL, Hu HH, Perkins TG, Chia JM, Gilsanz V. Effectiveness of diffusion tensor imaging in assessing disease severity in Duchenne muscular dystrophy: preliminary study Pediatric Radiology. DOI: 10.1007/s00247-014-3187-6  0.01
2014 Montella C, Perkins T, Spletzer J, Sands M. To the bookstore! autonomous wheelchair navigation in an urban environment Springer Tracts in Advanced Robotics. 92: 249-263. DOI: 10.1007/978-3-642-40686-7_17  0.04
2014 Perkins TA, Reiner RC, Rodriguez-Barraquer I, Smith DL, Scott TW, Cummings DAT. A review of transmission models of dengue: A quantitative and qualitative analysis of model features Dengue and Dengue Hemorrhagic Fever: Second Edition. 99-114.  0.04
2014 Kearney S, Perkins T, Maakrun J. A transformative experience: A short-term cross-cultural service-learning immersion to Kenya Issues in Educational Research. 24: 229-237.  0.01
2014 Marchioro G, Ryan MM, Perkins T. Implementing an interdisciplinary student centric approach to work-integrated learning Asia-Pacific Journal of Cooperative Education. 15: 359-368.  0.01
2014 Van Den Berg AK, Perkins TD, Isselhardt ML, Godshall MA, Lloyd SW. Effects of membrane separation on maple syrup composition and flavor International Sugar Journal. 116: 656-665.  0.01
2013 Perkins TA, Scott TW, Le Menach A, Smith DL. Heterogeneity, mixing, and the spatial scales of mosquito-borne pathogen transmission. Plos Computational Biology. 9: e1003327. PMID 24348223 DOI: 10.1371/Journal.Pcbi.1003327  0.04
2013 Berweger S, Nguyen DM, Muller EA, Bechtel HA, Perkins TT, Raschke MB. Nano-chemical infrared imaging of membrane proteins in lipid bilayers. Journal of the American Chemical Society. 135: 18292-5. PMID 24251914 DOI: 10.1021/Ja409815G  1
2013 Wilkins N, Thigpen S, Lockman J, Mackin J, Madden M, Perkins T, Schut J, Van Regenmorter C, Williams L, Donovan J. Putting program evaluation to work: a framework for creating actionable knowledge for suicide prevention practice. Translational Behavioral Medicine. 3: 149-61. PMID 24073166 DOI: 10.1007/s13142-012-0175-y  0.01
2013 Macura SL, Steinbacher JL, MacPherson MB, Lathrop MJ, Sayan M, Hillegass JM, Beuschel SL, Perkins TN, Spiess PC, van der Vliet A, Butnor KJ, Shukla A, Wadsworth M, Landry CC, Mossman BT. Microspheres targeted with a mesothelin antibody and loaded with doxorubicin reduce tumor volume of human mesotheliomas in xenografts Bmc Cancer. 13. PMID 24024776 DOI: 10.1186/1471-2407-13-400  0.01
2013 Lehman JH, Lester MI, K?os J, Alexander MH, Dagdigian PJ, Herráez-Aguilar D, Aoiz FJ, Brouard M, Chadwick H, Perkins T, Seamons SA. Electronic quenching of OH A 2Σ+ induced by collisions with Kr atoms. The Journal of Physical Chemistry. A. 117: 13481-90. PMID 23964894 DOI: 10.1021/Jp407035P  0.04
2013 Smith DL, Perkins TA, Tusting LS, Scott TW, Lindsay SW. Mosquito population regulation and larval source management in heterogeneous environments. Plos One. 8: e71247. PMID 23951118 DOI: 10.1371/Journal.Pone.0071247  0.04
2013 Hillegass JM, Miller JM, MacPherson MB, Westbom CM, Sayan M, Thompson JK, Macura SL, Perkins TN, Beuschel SL, Alexeeva V, Pass HI, Steele C, Mossman BT, Shukla A. Asbestos and erionite prime and activate the NLRP3 inflammasome that stimulates autocrine cytokine release in human mesothelial cells. Particle and Fibre Toxicology. 10: 39. PMID 23937860 DOI: 10.1186/1743-8977-10-39  0.01
2013 Paik DH, Roskens VA, Perkins TT. Torsionally constrained DNA for single-molecule assays: an efficient, ligation-free method. Nucleic Acids Research. 41: e179. PMID 23935118 DOI: 10.1016/J.Bpj.2013.11.2234  1
2013 Nilufar S, Morrow AA, Lee JM, Perkins TJ. FiloDetect: Automatic detection of filopodia from fluorescence microscopy images Bmc Systems Biology. 7. PMID 23880086 DOI: 10.1186/1752-0509-7-66  0.12
2013 Soleimani VD, Palidwor GA, Ramachandran P, Perkins TJ, Rudnicki MA. Chromatin tandem affinity purification sequencing Nature Protocols. 8: 1525-1534. PMID 23845964 DOI: 10.1038/Nprot.2013.088  0.12
2013 Perkins TT, Tay CY, Thirriot F, Marshall B. Choosing a benchtop sequencing machine to characterise Helicobacter pylori genomes. Plos One. 8: e67539. PMID 23840736 DOI: 10.1371/Journal.Pone.0067539  0.08
2013 Phenix H, Perkins T, Kærn M. Identifiability and inference of pathway motifs by epistasis analysis Chaos. 23. PMID 23822501 DOI: 10.1063/1.4807483  0.12
2013 Corp DT, Drury HG, Young K, Do M, Perkins T, Pearce AJ. Corticomotor responses to attentionally demanding motor performance: a mini-review. Frontiers in Psychology. 4: 165. PMID 23579267 DOI: 10.3389/fpsyg.2013.00165  0.01
2013 Sullan RM, Churnside AB, Nguyen DM, Bull MS, Perkins TT. Atomic force microscopy with sub-picoNewton force stability for biological applications. Methods (San Diego, Calif.). 60: 131-41. PMID 23562681 DOI: 10.1016/J.Ymeth.2013.03.029  1
2013 Hu HH, Yin L, Aggabao PC, Perkins TG, Chia JM, Gilsanz V. Comparison of brown and white adipose tissues in infants and children with chemical-shift-encoded water-fat MRI Journal of Magnetic Resonance Imaging. 38: 885-896. PMID 23440739 DOI: 10.1002/jmri.24053  0.01
2013 Reiner RC, Perkins TA, Barker CM, Niu T, Chaves LF, Ellis AM, George DB, Le Menach A, Pulliam JR, Bisanzio D, Buckee C, Chiyaka C, Cummings DA, Garcia AJ, Gatton ML, et al. A systematic review of mathematical models of mosquito-borne pathogen transmission: 1970-2010. Journal of the Royal Society, Interface / the Royal Society. 10: 20120921. PMID 23407571 DOI: 10.1098/Rsif.2012.0921  0.08
2013 Peeters PM, Perkins TN, Wouters EFM, Mossman BT, Reynaert NL. Silica induces NLRP3 inflammasome activation in human lung epithelial cells Particle and Fibre Toxicology. 10. PMID 23402370 DOI: 10.1186/1743-8977-10-3  0.01
2013 Montange RK, Bull MS, Shanblatt ER, Perkins TT. Optimizing bead size reduces errors in force measurements in optical traps. Optics Express. 21: 39-48. PMID 23388894 DOI: 10.1364/OE.21.000039  1
2013 Liu S, Premnath PN, Bolger JK, Perkins TL, Kirkland LO, Kontopidis G, McInnes C. Optimization of non-ATP competitive CDK/cyclin groove inhibitors through REPLACE-mediated fragment assembly Journal of Medicinal Chemistry. 56: 1573-1582. PMID 23323521 DOI: 10.1021/Jm3013882  0.04
2013 Ramachandran P, Palidwor GA, Porter CJ, Perkins TJ. MaSC: Mappability-sensitive cross-correlation for estimating mean fragment length of single-end short-read sequencing data Bioinformatics. 29: 444-450. PMID 23300135 DOI: 10.1093/Bioinformatics/Btt001  0.12
2013 Hu HH, Perkins TG, Chia JM, Gilsanz V. Characterization of human brown adipose tissue by chemical-shift water-fat MRI American Journal of Roentgenology. 200: 177-183. PMID 23255760 DOI: 10.2214/AJR.12.8996  0.01
2013 Perkins TT, Davies MR, Klemm EJ, Rowley G, Wileman T, James K, Keane T, Maskell D, Hinton JC, Dougan G, Kingsley RA. ChIP-seq and transcriptome analysis of the OmpR regulon of Salmonella enterica serovars Typhi and Typhimurium reveals accessory genes implicated in host colonization. Molecular Microbiology. 87: 526-38. PMID 23190111 DOI: 10.1111/Mmi.12111  0.08
2013 Fowler JR, Perkins TA, Buttaro BA, Truant AL. Bacteria adhere less to barbed monofilament than braided sutures in a contaminated wound model. Clinical Orthopaedics and Related Research. 471: 665-71. PMID 23001503 DOI: 10.1007/S11999-012-2593-Z  0.24
2013 Zimorski SE, Perkins TL, Selman W. Chelonian species in the diet of reintroduced whooping cranes (Grus americana) in Louisiana Wilson Journal of Ornithology. 125: 420-423. DOI: 10.1676/12-156.1  0.01
2013 Khosravi Y, Rehvathy V, Wee WY, Wang S, Baybayan P, Singh S, Ashby M, Ong J, Amoyo AA, Seow SW, Choo SW, Perkins T, Chua EG, Tay A, Marshall BJ, et al. Comparing the genomes of Helicobacter pylori clinical strain UM032 and Mice-adapted derivatives Gut Pathogens. 5. DOI: 10.1186/1757-4749-5-25  0.08
2013 Myers M, Evans Z, Cintron O, Cornwell R, Perkins T, Cosman C, Bloswick D, Merryweather A. E-tetra kayak: Adaptive sport kayak for recreational therapy for persons with spinal cord injuries Asme 2013 Summer Bioengineering Conference, Sbc 2013. 1. DOI: 10.1115/SBC2013-14831  0.01
2013 Carey SM, Herrera Allen T, Perkins T, Waller MS. A detailed cost evaluation of a juvenile drug court that follows the Juvenile drug court model (16 strategies) Juvenile and Family Court Journal. 64: 1-20. DOI: 10.1111/jfcj.12009  0.01
2013 Perkins T, Murphy RR. Active and mediated opportunistic cooperation between an unmanned aerial vehicle and an unmanned ground vehicle 2013 Ieee International Symposium On Safety, Security, and Rescue Robotics, Ssrr 2013. DOI: 10.1109/SSRR.2013.6719376  0.01
2013 Westgate JA, Pearce GW, Preece SJ, Schweger CE, Morlan RE, Pearce NJG, Perkins TW. Tephrochronology, magnetostratigraphy and mammalian faunas of Middle and Early Pleistocene sediments at two sites on the Old Crow River, northern Yukon Territory, Canada Quaternary Research (United States). 79: 75-85. DOI: 10.1016/j.yqres.2012.09.003  0.01
2013 Gogus NG, Perkins TL, Poletsky EA. Non-compact versions of Edwards' Theorem Positivity. 17: 459-473. DOI: 10.1007/S11117-012-0181-9  0.01
2013 King GM, Churnside AB, Perkins TT. A precision force microscope for biophysics Conference Proceedings of the Society For Experimental Mechanics Series. 6: 31-36. DOI: 10.1007/978-1-4614-4436-7_5  1
2013 Perkins T. Beyond jacques derrida and george lindbeck: Toward a particularity-based approach to interreligious communication Journal of Ecumenical Studies. 48: 343-348.  0.01
2013 Collins PM, Walters DA, Perkins T, Kuhach JD, Veith E. Effective caprock determination for SAGD projects Journal of Canadian Petroleum Technology. 52: 112-119.  0.01
2013 Perkins T. Student becomes teacher Downbeat. 80: 86-87.  0.01
2012 Tay CY, Windsor HM, Thirriot F, Lu W, Conway C, Perkins TT, Marshall BJ. Helicobacter pylori eradication in Western Australia using novel quadruple therapy combinations. Alimentary Pharmacology & Therapeutics. 36: 1076-83. PMID 23072648 DOI: 10.1111/apt.12089  0.08
2012 Levin P, Lefebvre J, Perkins TJ. What do molecules do when we are not looking? State sequence analysis for stochastic chemical systems Journal of the Royal Society Interface. 9: 3411-3425. PMID 22977098 DOI: 10.1098/Rsif.2012.0633  0.12
2012 Mackin J, Perkins T, Furrer C. The power of protection: a population-based comparison of Native and non-Native youth suicide attempters. American Indian and Alaska Native Mental Health Research (Online). 19: 20-54. PMID 22875471 DOI: 10.5820/Aian.1902.2012.20  0.01
2012 Macura SL, Hillegass JM, Steinbacher JL, MacPherson MB, Shukla A, Beuschel SL, Perkins TN, Butnor KJ, Lathrop MJ, Sayan M, Hekmatyar K, Taatjes DJ, Kauppinen RA, Landry CC, Mossman BT. A multifunctional mesothelin antibody-tagged microparticle targets human mesotheliomas. The Journal of Histochemistry and Cytochemistry : Official Journal of the Histochemistry Society. 60: 658-74. PMID 22723527 DOI: 10.1369/0022155412452567  0.01
2012 Churnside AB, Sullan RM, Nguyen DM, Case SO, Bull MS, King GM, Perkins TT. Routine and timely sub-picoNewton force stability and precision for biological applications of atomic force microscopy. Nano Letters. 12: 3557-61. PMID 22694769 DOI: 10.1016/J.Bpj.2012.11.1191  1
2012 Soleimani VD, Punch VG, Kawabe Y, Jones AE, Palidwor GA, Porter CJ, Cross JW, Carvajal JJ, Kockx CE, van IJcken WF, Perkins TJ, Rigby PW, Grosveld F, Rudnicki MA. Transcriptional dominance of Pax7 in adult myogenesis is due to high-affinity recognition of homeodomain motifs. Developmental Cell. 22: 1208-20. PMID 22609161 DOI: 10.1016/J.Devcel.2012.03.014  0.12
2012 Paik DH, Perkins TT. Single-molecule optical-trapping measurements with DNA anchored to an array of gold nanoposts. Methods in Molecular Biology (Clifton, N.J.). 875: 335-56. PMID 22573450 DOI: 10.1007/978-1-61779-806-1_18  1
2012 Lefebvre J, Perkins TJ. Neural population densities shape network correlations. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 85: 021914. PMID 22463251 DOI: 10.1103/Physreve.85.021914  0.12
2012 Perkins TN, Shukla A, Peeters PM, Steinbacher JL, Landry CC, Lathrop SA, Steele C, Reynaert NL, Wouters EF, Mossman BT. Differences in gene expression and cytokine production by crystalline vs. amorphous silica in human lung epithelial cells. Particle and Fibre Toxicology. 9: 6. PMID 22300531 DOI: 10.1186/1743-8977-9-6  0.01
2012 Perkins TJ. The show that started it all. Emergency! Debuted 40 years ago this month. Ems World. 41: 48-9. PMID 22299493  0.01
2012 Perkins TA. Evolutionarily labile species interactions and spatial spread of invasive species. The American Naturalist. 179: E37-54. PMID 22218319 DOI: 10.1086/663682  0.04
2012 Paik DH, Perkins TT. Dynamics and multiple stable binding modes of DNA intercalators revealed by single-molecule force spectroscopy. Angewandte Chemie (International Ed. in English). 51: 1811-5. PMID 22162006 DOI: 10.1002/anie.201105540  1
2012 Iacucci E, Zingg HH, Perkins TJ. Methods for determining the statistical significance of enrichment or depletion of gene ontology classifications under weighted membership Frontiers in Genetics. 3. DOI: 10.3389/fgene.2012.00024  0.12
2012 Edwards R, Foxall E, Perkins TJ. Scaling properties of paths on graphs Electronic Journal of Linear Algebra. 23: 966-988. DOI: 10.13001/1081-3810.1569  0.01
2012 Perkins TE. Women's Pathways Into Activism: Rethinking the Women's Environmental Justice Narrative in California's San Joaquin Valley Organization and Environment. 25: 76-94. DOI: 10.1177/1086026612445390  0.01
2012 Paik DH, Perkins TT. Force spectroscopy of DNA: There is still a lot to learn Proceedings of Spie - the International Society For Optical Engineering. 8458. DOI: 10.1117/12.945812  1
2012 Perkins T, Adler-Golden S, Cappelaere P, Mandl D. High-speed atmospheric correction for spectral image processing Proceedings of Spie - the International Society For Optical Engineering. 8390. DOI: 10.1117/12.918908  0.01
2012 Perkins T, Adler-Golden S, Matthew MW, Berk A, Bernstein LS, Lee J, Fox M. Speed and accuracy improvements in FLAASH atmospheric correction of hyperspectral imagery Optical Engineering. 51. DOI: 10.1117/1.OE.51.11.111707  0.01
2012 Cirmirakis D, Jiang D, Demosthenous A, Donaldson N, Perkins T. A telemetry operated vestibular prosthesis 2012 19th Ieee International Conference On Electronics, Circuits, and Systems, Icecs 2012. 576-578. DOI: 10.1109/ICECS.2012.6463681  0.04
2012 Jiang D, Demosthenous A, Perkins TA, Cirmirakis D, Liu X, Donaldson N. An implantable 3-D vestibular stimulator with neural recording European Solid-State Circuits Conference. 277-280. DOI: 10.1109/ESSCIRC.2012.6341339  0.04
2012 Cirmirakis D, Jiang D, Demosthenous A, Donaldson N, Perkins T. A fast passive phase shift keying modulator for inductively coupled implanted medical devices European Solid-State Circuits Conference. 301-304. DOI: 10.1109/ESSCIRC.2012.6341314  0.04
2012 Chadwick H, Brouard M, Chang YP, Eyles CJ, Perkins T, Seamons SA, Kos J, Alexander MH, Aoiz FJ. A new potential energy surface for OH(A 2Σ +)-Kr: The van der Waals complex and inelastic scattering Journal of Chemical Physics. 137. DOI: 10.1063/1.4757859  0.04
2012 Van Den Berg AK, Perkins TD, Isselhardt ML, Godshall MA, Lloyd SW. Maple syrup production with sap concentrated to high levels by membrane separation: Effects on syrup chemical composition and flavor International Sugar Journal. 114: 572-576.  0.01
2011 Dai Jiang, Demosthenous A, Perkins T, Xiao Liu, Donaldson N. A Stimulator ASIC Featuring Versatile Management for Vestibular Prostheses. Ieee Transactions On Biomedical Circuits and Systems. 5: 147-59. PMID 23851203 DOI: 10.1109/Tbcas.2011.2138139  0.04
2011 Arnvig KB, Comas I, Thomson NR, Houghton J, Boshoff HI, Croucher NJ, Rose G, Perkins TT, Parkhill J, Dougan G, Young DB. Sequence-based analysis uncovers an abundance of non-coding RNA in the total transcriptome of Mycobacterium tuberculosis. Plos Pathogens. 7: e1002342. PMID 22072964 DOI: 10.1371/Journal.Ppat.1002342  0.08
2011 Chan CC, Scoggin S, Wang D, Cherry S, Dembo T, Greenberg B, Jin EJ, Kuey C, Lopez A, Mehta SQ, Perkins TJ, Brankatschk M, Rothenfluh A, Buszczak M, Hiesinger PR. Systematic discovery of Rab GTPases with synaptic functions in Drosophila. Current Biology : Cb. 21: 1704-15. PMID 22000105 DOI: 10.1016/J.Cub.2011.08.058  0.12
2011 Sheets L, Johnson J, Todd T, Perkins T, Gu C, Rau M. Unsupported labeling of race as a risk factor for certain diseases in a widely used medical textbook. Academic Medicine : Journal of the Association of American Medical Colleges. 86: 1300-3. PMID 21869670 DOI: 10.1097/ACM.0b013e31822bbdb5  0.04
2011 Chaudhuri RR, Yu L, Kanji A, Perkins TT, Gardner PP, Choudhary J, Maskell DJ, Grant AJ. Quantitative RNA-seq analysis of the Campylobacter jejuni transcriptome. Microbiology (Reading, England). 157: 2922-32. PMID 21816880 DOI: 10.1099/mic.0.050278-0  0.08
2011 Finigan MW, Perkins T, Zold-Kilbourn P, Parks J, Stringer M. Preliminary evaluation of extended-release naltrexone in Michigan and Missouri drug courts. Journal of Substance Abuse Treatment. 41: 288-93. PMID 21696912 DOI: 10.1016/j.jsat.2011.04.003  0.01
2011 Lee DO, Ziman RB, Perkins AT, Poceta JS, Walters AS, Barrett RW. A randomized, double-blind, placebo-controlled study to assess the efficacy and tolerability of gabapentin enacarbil in subjects with restless legs syndrome. Journal of Clinical Sleep Medicine : Jcsm : Official Publication of the American Academy of Sleep Medicine. 7: 282-92. PMID 21677899 DOI: 10.5664/JCSM.1074  0.01
2011 Phenix H, Morin K, Batenchuk C, Parker J, Abedi V, Yang L, Tepliakova L, Perkins TJ, Kærn M. Quantitative epistasis analysis and pathway inference from genetic interaction data. Plos Computational Biology. 7: e1002048. PMID 21589890 DOI: 10.1371/Journal.Pcbi.1002048  0.12
2011 Chang YP, Brouard M, Cireasa R, Perkins T, Seamons SA. Molecular photofragment orientation in the photodissociation of H2O2 at 193 nm and 248 nm. Physical Chemistry Chemical Physics : Pccp. 13: 8213-29. PMID 21437323 DOI: 10.1039/C0Cp02560G  0.04
2011 Gerin CG, Madueke IC, Perkins T, Hill S, Smith K, Haley B, Allen SA, Garcia RP, Paunesku T, Woloschak G. Combination strategies for repair, plasticity, and regeneration using regulation of gene expression during the chronic phase after spinal cord injury. Synapse (New York, N.Y.). 65: 1255-81. PMID 21308793 DOI: 10.1002/Syn.20903  0.01
2011 Paik DH, Perkins TT. Overstretching DNA at 65 pN does not require peeling from free ends or nicks. Journal of the American Chemical Society. 133: 3219-21. PMID 21207940 DOI: 10.1021/ja108952v  1
2011 Filippi CG, Pace T, Perkins TG, Murdoch JB, Andrews T. Proton MR spectroscopy in a 1T open MR imaging system American Journal of Neuroradiology. 32: E156-E159. PMID 21163878 DOI: 10.3174/Ajnr.A2305  0.01
2011 Pucko C, Beckage B, Perkins T, Keeton WS. Species shifts in response to climate change: Individual or shared responses? Journal of the Torrey Botanical Society. 138: 156-176. DOI: 10.3159/Torrey-D-10-00011.1  0.01
2011 Perkins TL. The Dirichlet problem for harmonic functions on compact sets Pacific Journal of Mathematics. 254: 211-226. DOI: 10.2140/pjm.2011.254.211  0.01
2011 Charlebois DA, Perkins TJ, Kaern M. Stochastic gene expression and the processing and propagation of noisy signals in genetic networks Intelligent Systems Reference Library. 11: 89-112. DOI: 10.1007/978-3-642-19621-8_5  0.12
2011 Toor P, Perkins T, Powell MS, Franke J. The influence of liner wear on milling efficiency Metplant 2011 - Metallurgical Plant Design and Operating Strategies. 193-212.  0.12
2011 Tracadas P, Bonavides C, Quirein J, Perkins T. Evaluation of navigation quality of non-survey logging or MWD tools and methods of navigation sensor correction and reconstruction Society of Petroleum Engineers - Brazil Offshore Conference 2011. 1: 436-441.  0.01
2011 Van Den Berg AK, Perkins TD, Isselhardt ML, Godshall MA, Lloyd SW. Effects of producing maple syrup from concentrated and reconstituted maple sap of sugar concentrations International Sugar Journal. 113: 35-44.  0.01
2010 Salehi M, Perkins TJ. Maximum probability reaction sequences in stochastic chemical kinetic systems. Frontiers in Physiology. 1: 170. PMID 21629860 DOI: 10.3389/Fpsyt.2010.00137  0.12
2010 Churnside AB, King GM, Perkins TT. Label-free optical imaging of membrane patches for atomic force microscopy. Optics Express. 18: 23924-32. PMID 21164738 DOI: 10.1364/Oe.18.023924  1
2010 Summer G, Perkins TJ. Functional data analysis for identifying nonlinear models of gene regulatory networks. Bmc Genomics. 11: S18. PMID 21143801 DOI: 10.1186/1471-2164-11-S4-S18  0.12
2010 Husainy AN, Morrow AA, Perkins TJ, Lee JM. Robust patterns in the stochastic organization of filopodia. Bmc Cell Biology. 11: 86. PMID 21083909 DOI: 10.1186/1471-2121-11-86  0.12
2010 Palidwor GA, Perkins TJ, Xia X. A general model of codon bias due to GC mutational bias. Plos One. 5: e13431. PMID 21048949 DOI: 10.1371/Journal.Pone.0013431  0.12
2010 Perkins TJ, Wilds R, Glass L. Robust dynamics in minimal hybrid models of genetic networks. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 368: 4961-75. PMID 20921006 DOI: 10.1098/Rsta.2010.0139  0.12
2010 Hillegass JM, Shukla A, MacPherson MB, Lathrop SA, Alexeeva V, Perkins TN, van der Vliet A, Vacek PM, Gunter ME, Mossman BT. Mechanisms of oxidative stress and alterations in gene expression by Libby six-mix in human mesothelial cells. Particle and Fibre Toxicology. 7: 26. PMID 20831825 DOI: 10.1186/1743-8977-7-26  0.01
2010 Perkins T, Stokes M, McGillivray J, Bittar R. Mirror neuron dysfunction in autism spectrum disorders. Journal of Clinical Neuroscience : Official Journal of the Neurosurgical Society of Australasia. 17: 1239-43. PMID 20598548 DOI: 10.1016/J.Jocn.2010.01.026  0.01
2010 Perkins TT, Li HW. Single-molecule studies of RecBCD. Methods in Molecular Biology (Clifton, N.J.). 587: 155-72. PMID 20225148 DOI: 10.1007/978-1-60327-355-8_11  1
2010 Hanson EH, Mishra RK, Chang DS, Perkins TG, Bonifield DR, Tandy RD, Cartwright PE, Peoples RR, Orrison WW. Response Journal of Neurosurgery: Spine. 13: 797. DOI: 10.3171/2010.3.SPINE10143  0.01
2010 King GM, Churnside AB, Perkins TT. Optical trapping meets atomic force microscopy: A precision force microscope for biophysics Proceedings of Spie - the International Society For Optical Engineering. 7762. DOI: 10.1117/12.862745  1
2010 Perkins TT, Malley CV, Dubson M, Perkins KK. An interactive optical tweezers simulation for science education Proceedings of Spie - the International Society For Optical Engineering. 7762. DOI: 10.1117/12.862030  1
2010 Jiang D, Demosthenous A, Cirmirakis D, Perkins TA, Donaldson N. Design of a stimulator ASIC for an implantable vestibular neural prosthesis 2010 Ieee Biomedical Circuits and Systems Conference, Biocas 2010. 206-209. DOI: 10.1109/BIOCAS.2010.5709607  0.04
2010 Perkins TT, King GM, Churnside AB, Carter AR. Ultrastable atomic force microscopy using laser-based, active noise cancelation Optics Infobase Conference Papers 1
2010 Perkins T, Durst K. Dam safety risk analysis using FEMA floodplain modeling and mapping Association of State Dam Safety Officials Annual Conference 2010, Dam Safety 2010. 1598-1612.  0.01
2010 Brown RF, Appleget J, Perkins TK, Blais C, Duong D. Developing best practices for validation of irregular warfare models Spring Simulation Interoperability Workshop 2010, 2010 Spring Siw. 469-481.  0.01
2010 Baez FR, Jones S, Perkins TK, Pearman J. Cultural modeling support to Pakistan-Afghanistan (PAKAF) strategic multi-layer assessment (SMA) Spring Simulation Interoperability Workshop 2010, 2010 Spring Siw. 483-491.  0.01
2010 Perkins TT, King GM, Churnside AB, Carter AR. Ultrastable atomic force microscopy using laser-based, active noise cancelation Optics Infobase Conference Papers 1
2009 Paik DH, Seol Y, Halsey WA, Perkins TT. Integrating a high-force optical trap with gold nanoposts and a robust gold-DNA bond. Nano Letters. 9: 2978-83. PMID 19492836 DOI: 10.1021/Nl901404S  1
2009 King GM, Carter AR, Churnside AB, Eberle LS, Perkins TT. Ultrastable atomic force microscopy: atomic-scale stability and registration in ambient conditions. Nano Letters. 9: 1451-6. PMID 19351191 DOI: 10.1021/Nl803298Q  1
2009 Carter AR, Seol Y, Perkins TT. Precision surface-coupled optical-trapping assay with one-basepair resolution. Biophysical Journal. 96: 2926-34. PMID 19348774 DOI: 10.1016/J.Bpj.2008.12.3933  1
2009 Churnside AB, King GM, Perkins TT. Independent measurements of force and position in atomic force microscopy Proceedings of Spie - the International Society For Optical Engineering. 7405. DOI: 10.1117/12.826567  1
2009 Perkins TT. Dynamics of DNA-based molecular motors measured with 1-bp resolution Cleo/Europe - Eqec 2009 - European Conference On Lasers and Electro-Optics and the European Quantum Electronics Conference. DOI: 10.1109/CLEOE-EQEC.2009.5191666  1
2009 Perkins TT. Optical traps for single molecule biophysics: A primer Laser and Photonics Reviews. 3: 203-220. DOI: 10.1002/lpor.200810014  1
2008 Churnside AB, King GM, Carter AR, Perkins TT. Improved performance of an ultrastable measurement platform using a field-programmable gate array for real-time deterministic control Proceedings of Spie - the International Society For Optical Engineering. 7042. DOI: 10.1117/12.795700  1
2007 Carter AR, King GM, Perkins TT. Back-scattered detection provides atomic-scale localization precision, stability, and registration in 3D. Optics Express. 15: 13434-45. PMID 19550612 DOI: 10.1364/Oe.15.013434  1
2007 Seol Y, Li J, Nelson PC, Perkins TT, Betterton MD. Elasticity of short DNA molecules: theory and experiment for contour lengths of 0.6-7 microm. Biophysical Journal. 93: 4360-73. PMID 17766363 DOI: 10.1529/Biophysj.107.112995  1
2007 Hieb AR, Halsey WA, Betterton MD, Perkins TT, Kugel JF, Goodrich JA. TFIIA changes the conformation of the DNA in TBP/TATA complexes and increases their kinetic stability. Journal of Molecular Biology. 372: 619-32. PMID 17681538 DOI: 10.1016/J.Jmb.2007.06.061  1
2007 Carter AR, King GM, Ulrich TA, Halsey W, Alchenberger D, Perkins TT. Stabilization of an optical microscope to 0.1 nm in three dimensions. Applied Optics. 46: 421-7. PMID 17228390 DOI: 10.1364/Ao.46.000421  1
2006 Seol Y, Carpenter AE, Perkins TT. Gold nanoparticles: enhanced optical trapping and sensitivity coupled with significant heating. Optics Letters. 31: 2429-31. PMID 16880845 DOI: 10.1364/Ol.31.002429  1
2005 Carter AR, King GM, Ulrich TA, Halsey WA, Perkins TT. 3D stabilization of an optical microscope to 0.1 nm at 1 Hz using an array of nano-posts Optics Infobase Conference Papers. DOI: 10.1364/Ls.2005.Ltue5  1
2004 Nugent-Glandorf L, Perkins TT. Measuring 0.1-nm motion in 1 ms in an optical microscope with differential back-focal-plane detection. Optics Letters. 29: 2611-3. PMID 15552661 DOI: 10.1364/Ol.29.002611  1
2004 Perkins TT, Li HW, Dalal RV, Gelles J, Block SM. Forward and reverse motion of single RecBCD molecules on DNA. Biophysical Journal. 86: 1640-8. PMID 14990491 DOI: 10.1016/S0006-3495(04)74232-0  1
2003 Perkins TT, Dalal RV, Mitsis PG, Block SM. Sequence-dependent pausing of single lambda exonuclease molecules. Science (New York, N.Y.). 301: 1914-8. PMID 12947034 DOI: 10.1126/Science.1088047  1
1999 Larson RG, Perkins TT, Smith DE, Chu S. Single-molecule hydrodynamics of tethered and released DNA molecules Acs Symposium Series. 736: 196-207.  1
1997 Perkins TT, Smith DE, Chu S. Single polymer dynamics in an elongational flow. Science (New York, N.Y.). 276: 2016-21. PMID 9197259 DOI: 10.1126/Science.276.5321.2016  1
1997 Larson RG, Perkins TT, Smith DE, Chu S. Hydrodynamics of a DNA molecule in a flow field Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 55: 1794-1797.  1
1995 Smith DE, Perkins TT, Chu S. Self-diffusion of an entangled DNA molecule by reptation. Physical Review Letters. 75: 4146-4149. PMID 10059826 DOI: 10.1103/Physrevlett.75.4146  1
1995 Perkins TT, Smith DE, Larson RG, Chu S. Stretching of a single tethered polymer in a uniform flow. Science (New York, N.Y.). 268: 83-7. PMID 7701345 DOI: 10.1126/Science.7701345  1
1994 Perkins TT, Quake SR, Smith DE, Chu S. Relaxation of a single DNA molecule observed by optical microscopy. Science (New York, N.Y.). 264: 822-6. PMID 8171336 DOI: 10.1126/Science.8171336  1
1994 Perkins TT, Smith DE, Chu S. Direct observation of tube-like motion of a single polymer chain. Science (New York, N.Y.). 264: 819-22. PMID 8171335 DOI: 10.1126/Science.8171335  1
1993 Perkins TT. Steady-state gain and saturation flux measurements in a high efficiency, electron-beam-pumped, Ar-Xe laser Journal of Applied Physics. 74: 4860-4866. DOI: 10.1063/1.354315  1
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