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Gideon Dreyfuss - Related publications

Biochemistry and Biophysics University of Pennsylvania, Philadelphia, PA, United States 
Spinal Muscular Atrophy, RNA binding proteins, Splicing, High-Throughput Screening
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Cho JH, Lee JW, Yoon JH, Min KW. Crosslinking Immunoprecipitation and qPCR (CLIP-qPCR) Analysis to Map Interactions of Long Noncoding RNAs with Canonical and Non-canonical RNA-Binding Proteins. Methods in Molecular Biology (Clifton, N.J.). 2372: 11-18. PMID 34417738 DOI: 10.1007/978-1-0716-1697-0_2   
2021 Akirtava C, McManus CJ. Control of translation by eukaryotic mRNA transcript leaders-Insights from high-throughput assays and computational modeling. Wiley Interdisciplinary Reviews. Rna. 12: e1623. PMID 32869519 DOI: 10.1002/wrna.1623   
2021 Das A, Sinha T, Shyamal S, Panda AC. Emerging Role of Circular RNA-Protein Interactions. Non-Coding Rna. 7. PMID 34449657 DOI: 10.3390/ncrna7030048   
2021 Chhipi-Shrestha JK, Schneider-Poetsch T, Suzuki T, Mito M, Khan K, Dohmae N, Iwasaki S, Yoshida M. Splicing modulators elicit global translational repression by condensate-prone proteins translated from introns. Cell Chemical Biology. PMID 34520743 DOI: 10.1016/j.chembiol.2021.07.015   
2021 Bheemireddy S, Sandhya S, Srinivasan N. Comparative Analysis of Structural and Dynamical Features of Ribosome Upon Association With mRNA Reveals Potential Role of Ribosomal Proteins. Frontiers in Molecular Biosciences. 8: 654164. PMID 34409066 DOI: 10.3389/fmolb.2021.654164   
2021 Blake D, Lynch KW. The three as: Alternative splicing, alternative polyadenylation and their impact on apoptosis in immune function. Immunological Reviews. PMID 34368964 DOI: 10.1111/imr.13018   
2021 De Paoli-Iseppi R, Gleeson J, Clark MB. Isoform Age - Splice Isoform Profiling Using Long-Read Technologies. Frontiers in Molecular Biosciences. 8: 711733. PMID 34409069 DOI: 10.3389/fmolb.2021.711733   
2021 Neault N, O'Reilly S, Baig AT, Plaza-Diaz J, Azimi M, Farooq F, Baird SD, MacKenzie A. High-throughput kinome-RNAi screen identifies protein kinase R activator (PACT) as a novel genetic modifier of CUG foci integrity in myotonic dystrophy type 1 (DM1). Plos One. 16: e0256276. PMID 34520479 DOI: 10.1371/journal.pone.0256276   
2021 Wong J, Martelly W, Sharma S. A Reporter Based Cellular Assay for Monitoring Splicing Efficiency. Journal of Visualized Experiments : Jove. PMID 34605821 DOI: 10.3791/63014   
2021 He C, Guo J, Tian W, Wong CCL. Proteogenomics Integrating Novel Junction Peptide Identification Strategy Discovers Three Novel Protein Isoforms of Human NHSL1 and EEF1B2. Journal of Proteome Research. PMID 34420305 DOI: 10.1021/acs.jproteome.1c00373   
2021 Zhang L, Chen J, Zhang L, Wei Y, Li Y, Xu X, Wu H, Yang ZN, Huang J, Hu F, Huang W, Cui YL. The pentatricopeptide repeat protein EMB1270 interacts with CFM2 to splice specific group II introns in Arabidopsis chloroplasts. Journal of Integrative Plant Biology. PMID 34427970 DOI: 10.1111/jipb.13165   
2021 Iyer V, Tushir S, Verma S, Majumdar S, Gayen S, Mishra R, Tatu U. The role of nuclear organization in trans-splicing based expression of heat shock protein 90 in Giardia lamblia. Plos Neglected Tropical Diseases. 15: e0009810. PMID 34559805 DOI: 10.1371/journal.pntd.0009810   
2021 Huang Y, Bai X, Guo Z, Dong H, Fu Y, Zhang H, Zhai G, Tian S, Wang Y, Zhang K. DNA-guided photoactivatable probe-based chemical proteomics reveals the reader protein of mRNA methylation. Iscience. 24: 103046. PMID 34553132 DOI: 10.1016/j.isci.2021.103046   
2021 Baralle M, Baralle FE. Alternative Splicing and Liver Disease. Annals of Hepatology. 100534. PMID 34547477 DOI: 10.1016/j.aohep.2021.100534   
2021 Wayment-Steele HK, Kim DS, Choe CA, Nicol JJ, Wellington-Oguri R, Watkins AM, Parra Sperberg RA, Huang PS, Participants E, Das R. Theoretical basis for stabilizing messenger RNA through secondary structure design. Nucleic Acids Research. PMID 34520542 DOI: 10.1093/nar/gkab764   
2021 Koo H, Hwang JY, Jung S, Park H, Bok J, Park JW. Position Specific Alternative Splicing and Gene Expression Profiles Along the Tonotopic Axis of Chick Cochlea. Frontiers in Molecular Biosciences. 8: 726976. PMID 34568429 DOI: 10.3389/fmolb.2021.726976   
2021 Baudin A, Xu X, Libich DS. The H, N and C resonance assignments of the C-terminal domain of Serpine mRNA binding protein 1 (SERBP1). Biomolecular Nmr Assignments. PMID 34436734 DOI: 10.1007/s12104-021-10046-3   
2021 Byres LP, Mufteev M, Yuki KE, Wei W, Piekna A, Wilson MD, Rodrigues DC, Ellis J. Identification of TIA1 mRNA targets during human neuronal development. Molecular Biology Reports. PMID 34410578 DOI: 10.1007/s11033-021-06634-0   
2021 Choi K, Yang A, Baek J, Jeong H, Kang Y, Baek W, Kim JC, Kang M, Choi M, Ham Y, Son MJ, Han SB, Kim J, Jang JH, Ahn JS, et al. Regulation of Survival Motor Neuron Gene Expression by Calcium Signaling. International Journal of Molecular Sciences. 22. PMID 34638572 DOI: 10.3390/ijms221910234   
2021 Tora L, Vincent SD. What defines the maternal transcriptome? Biochemical Society Transactions. PMID 34415300 DOI: 10.1042/BST20201125   
2021 Djapgne L, Oglesby AG. Impacts of Small RNAs and Their Chaperones on Bacterial Pathogenicity. Frontiers in Cellular and Infection Microbiology. 11: 604511. PMID 34322396 DOI: 10.3389/fcimb.2021.604511   
2021 Li Y, Aksenova V, Tingey M, Yu J, Ma P, Arnaoutov A, Chen S, Dasso M, Yang W. Distinct roles of nuclear basket proteins in directing the passage of mRNA through the nuclear pore. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34504007 DOI: 10.1073/pnas.2015621118   
2021 Karousis ED, Gypas F, Zavolan M, Mühlemann O. Nanopore sequencing reveals endogenous NMD-targeted isoforms in human cells. Genome Biology. 22: 223. PMID 34389041 DOI: 10.1186/s13059-021-02439-3   
2021 Kang W, Wang Y, Yang W, Zhang J, Zheng H, Li D. Research Progress on the Structure and Function of G3BP. Frontiers in Immunology. 12: 718548. PMID 34526993 DOI: 10.3389/fimmu.2021.718548   
2021 Chin A, Lécuyer E. Puromycin Labeling Coupled with Proximity Ligation Assays to Define Sites of mRNA Translation in Drosophila Embryos and Human Cells. Methods in Molecular Biology (Clifton, N.J.). 2381: 267-284. PMID 34590282 DOI: 10.1007/978-1-0716-1740-3_15   
2021 Zinn-Brooks L, Roper ML. Circadian rhythm shows potential for mRNA efficiency and self-organized division of labor in multinucleate cells. Plos Computational Biology. 17: e1008828. PMID 34339411 DOI: 10.1371/journal.pcbi.1008828   
2021 Huang Y, Sanguinetti G. BRIE2: computational identification of splicing phenotypes from single-cell transcriptomic experiments. Genome Biology. 22: 251. PMID 34452629 DOI: 10.1186/s13059-021-02461-5   
2021 Weisschuh N, Marino V, Schäferhoff K, Richter P, Park J, Haack TB, Dell'Orco D. Mutations at a split codon in the GTPase-encoding domain of OPA1 cause dominant optic atrophy through different molecular mechanisms. Human Molecular Genetics. PMID 34559197 DOI: 10.1093/hmg/ddab286   
2021 Barton SK, Gregory JM, Selvaraj BT, McDade K, Henstridge CM, Spires-Jones TL, James OG, Mehta AR, Story D, Burr K, Magnani D, Isaacs AM, Smith C, Chandran S. Dysregulation in Subcellular Localization of Myelin Basic Protein mRNA Does Not Result in Altered Myelination in Amyotrophic Lateral Sclerosis. Frontiers in Neuroscience. 15: 705306. PMID 34539336 DOI: 10.3389/fnins.2021.705306   
2021 Sales-Lee J, Perry DS, Bowser BA, Diedrich JK, Rao B, Beusch I, Yates JR, Roy SW, Madhani HD. Coupling of spliceosome complexity to intron diversity. Current Biology : Cb. PMID 34555349 DOI: 10.1016/j.cub.2021.09.004   
2021 Herbert CJ, Labarre-Mariotte S, Cornu D, Sophie C, Panozzo C, Michel T, Dujardin G, Bonnefoy N. Translational activators and mitoribosomal isoforms cooperate to mediate mRNA-specific translation in Schizosaccharomyces pombe mitochondria. Nucleic Acids Research. PMID 34634819 DOI: 10.1093/nar/gkab789   
2021 Liang Z, Wen C, Jiang H, Ma S, Liu X. Protein Arginine Methyltransferase 5 Functions Interacting Proteins. Frontiers in Cell and Developmental Biology. 9: 725301. PMID 34513846 DOI: 10.3389/fcell.2021.725301   
2021 Dell'Orco M, Elyaderani A, Vannan A, Sekar S, Powell G, Liang WS, Neisewander JL, Perrone-Bizzozero NI. HuD Regulates mRNA-circRNA-miRNA Networks in the Mouse Striatum Linked to Neuronal Development and Drug Addiction. Biology. 10. PMID 34571817 DOI: 10.3390/biology10090939   
2021 Feng H, Wan C, Zhang Z, Chen H, Li Z, Jiang H, Yin M, Dong S, Dou D, Wang Y, Zheng X, Ye W. Specific interaction of an RNA-binding protein with the 3'-UTR of its target mRNA is critical to oomycete sexual reproduction. Plos Pathogens. 17: e1010001. PMID 34648596 DOI: 10.1371/journal.ppat.1010001   
2021 Kubina J, Geldreich A, Gales JP, Baumberger N, Bouton C, Ryabova LA, Grasser KD, Keller M, Dimitrova M. Nuclear export of plant pararetrovirus mRNAs involves the TREX complex, two viral proteins and the highly structured 5' leader region. Nucleic Acids Research. PMID 34370034 DOI: 10.1093/nar/gkab653   
2021 Qiu Y, Ching WK, Zou Q. Matrix factorization-based data fusion for the prediction of RNA-binding proteins and alternative splicing event associations during epithelial-mesenchymal transition. Briefings in Bioinformatics. PMID 34410342 DOI: 10.1093/bib/bbab332   
2021 Lennon CW, Wahl D, Goetz JR, Weinberger J. Reactive Chlorine Species Reversibly Inhibit DnaB Protein Splicing in Mycobacteria. Microbiology Spectrum. e0030121. PMID 34549994 DOI: 10.1128/Spectrum.00301-21   
2021 Chen S, Shu W, Zheng H, Ma Z, Li M, Wang F. Dynamic visualization of mRNA splicing variants with a transactivating reporter. Chemical Communications (Cambridge, England). 57: 9594-9597. PMID 34546238 DOI: 10.1039/d1cc02439f   
2021 Lyu X, Yang Q, Zhao F, Liu Y. Codon usage and protein length-dependent feedback from translation elongation regulates translation initiation and elongation speed. Nucleic Acids Research. PMID 34417614 DOI: 10.1093/nar/gkab729   
2021 Kyriakopoulos AM, McCullough PA. Synthetic mRNAs; Their Analogue Caps and Contribution to Disease. Diseases (Basel, Switzerland). 9. PMID 34449596 DOI: 10.3390/diseases9030057   
2021 Li Y, Li Q, Beuchat G, Zeng H, Zhang C, Chen LQ. Combined analyses of translatome and transcriptome in Arabidopsis reveal new players responding to magnesium deficiency. Journal of Integrative Plant Biology. PMID 34473403 DOI: 10.1111/jipb.13169   
2021 Makeyeva YV, Shirayama M, Mello CC. Cues from mRNA splicing prevent default Argonaute silencing in C. elegans. Developmental Cell. PMID 34547227 DOI: 10.1016/j.devcel.2021.08.022   
2021 Love SL, Hoskins AA. Stuck on UUUU: New splicing inhibitors enhance U2AF2-RNA binding. Cell Chemical Biology. 28: 1106-1108. PMID 34416141 DOI: 10.1016/j.chembiol.2021.07.021   
2021 Wang X, Wen Y, Zhang J, Swanson G, Guo S, Cao C, Krawetz SA, Zhang Z, Yuan S. MFN2 interacts with nuage-associated proteins and is essential for male germ cell development by controlling mRNA fate during spermatogenesis. Development (Cambridge, England). 148. PMID 34437685 DOI: 10.1242/dev.196295   
2021 Umek T, Olsson T, Gissberg O, Saher O, Zaghloul EM, Lundin KE, Wengel J, Hanse E, Zetterberg H, Vizlin-Hodzic D, Smith CIE, Zain R. Oligonucleotides Targeting DNA Repeats Downregulate Gene Expression in Huntington's Patient-Derived Neural Model System. Nucleic Acid Therapeutics. PMID 34520257 DOI: 10.1089/nat.2021.0021   
2021 López-Juárez ZM, Aguilar-Henonin L, Guzmán P. The ATXN2 Orthologs and , Act Redundantly to In-Fluence Developmental Pathways throughout the Life Cycle of . International Journal of Molecular Sciences. 22. PMID 33802796 DOI: 10.3390/ijms22063068   
2021 Jia T, Jacquet T, Dalonneau F, Coudert P, Vaganay E, Exbrayat-Héritier C, Vollaire J, Josserand V, Ruggiero F, Coll JL, Eymin B. FGF-2 promotes angiogenesis through a SRSF1/SRSF3/SRPK1-dependent axis that controls VEGFR1 splicing in endothelial cells. Bmc Biology. 19: 173. PMID 34433435 DOI: 10.1186/s12915-021-01103-3   
2021 Yang M, Chen J, Li X, Huang J, Wang Q, Wang S, Wei S, Qin Q. The transcription factor NFYC positively regulates expression of MHCIa in the red-spotted grouper (Epinephelus akaara). Developmental and Comparative Immunology. 104272. PMID 34600022 DOI: 10.1016/j.dci.2021.104272   
2021 Budkina K, El Hage K, Clément MJ, Desforges B, Bouhss A, Joshi V, Maucuer A, Hamon L, Ovchinnikov LP, Lyabin DN, Pastré D. YB-1 unwinds mRNA secondary structures in vitro and negatively regulates stress granule assembly in HeLa cells. Nucleic Acids Research. PMID 34469566 DOI: 10.1093/nar/gkab748   
2021 Liu X, Huang X, Ma J, Li L, Hu H, Feng J, Gao X, Zhang Y, Liu L. 3'untranslated regions (3'UTR) of mRNA displays anticancer effects in non-small cell lung cancer (NSCLC) cells. American Journal of Cancer Research. 11: 3857-3876. PMID 34522454