Herman J.C. Berendsen - Publications

Affiliations: 
University of Groningen, Groningen, Netherlands 
Area:
molecular dynamics
Website:
https://chg.kncv.nl/geschiedenis/biografieen/b/berendsen%2C-h.j.c.

193 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Melo MN, Arnarez C, Sikkema H, Kumar N, Walko M, Berendsen HJ, Kocer A, Marrink SJ, Ingólfsson HI. High-throughput simulations reveal membrane-mediated effects of alcohols on MscL gating. Journal of the American Chemical Society. PMID 28122455 DOI: 10.1021/Jacs.6B11091  1
2015 Goga N, Melo MN, Rzepiela AJ, de Vries AH, Hadar A, Marrink SJ, Berendsen HJ. Benchmark of Schemes for Multiscale Molecular Dynamics Simulations. Journal of Chemical Theory and Computation. 11: 1389-98. PMID 26574351 DOI: 10.1021/Ct501102B  1
2015 Goga N, Melo MN, Rzepiela AJ, De Vries AH, Hadar A, Marrink SJ, Berendsen HJC. Benchmark of schemes for multiscale molecular dynamics simulations Journal of Chemical Theory and Computation. 11: 1389-1398. DOI: 10.1021/ct501102b  1
2014 Peters EA, Goga N, Berendsen HJ. Stochastic Dynamics with Correct Sampling for Constrained Systems. Journal of Chemical Theory and Computation. 10: 4208-20. PMID 26588119 DOI: 10.1021/ct500380x  1
2014 Peters EAJF, Goga N, Berendsen HJC. Stochastic dynamics with correct sampling for constrained systems Journal of Chemical Theory and Computation. 10: 4208-4220. DOI: 10.1021/ct500380x  1
2014 Melo MN, Goga N, Vries Ad, Berendsen H. Mixing and Matching Simulations at Different Resolutions Biophysical Journal. 106: 640. DOI: 10.1016/J.Bpj.2013.11.3546  1
2014 Ingólfsson HI, Arnarez C, Kumar N, Walko M, Berendsen HJC, Koçer A, Marrink SJ. Membrane Dependence of the Mechanosensitive Channel of Large Conductance Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.284  1
2012 Goga N, Rzepiela AJ, de Vries AH, Marrink SJ, Berendsen HJ. Efficient Algorithms for Langevin and DPD Dynamics. Journal of Chemical Theory and Computation. 8: 3637-49. PMID 26593009 DOI: 10.1021/Ct3000876  1
2012 Hünenberger PH, Mark AE, Berendsen HJ. Wilfred van Gunsteren: 35 Years of Biomolecular Simulation. Journal of Chemical Theory and Computation. 8: 3425-9. PMID 26592993 DOI: 10.1021/Ct300692S  1
2012 Hünenberger PH, Mark AE, Berendsen HJC. Wilfred van Gunsteren: 35 years of biomolecular simulation Journal of Chemical Theory and Computation. 8: 3425-3429. DOI: 10.1021/ct300692s  1
2012 Goga N, Rzepiela AJ, De Vries AH, Marrink SJ, Berendsen HJC. Efficient algorithms for langevin and DPD dynamics Journal of Chemical Theory and Computation. 8: 3637-3649. DOI: 10.1021/ct3000876  1
2012 Goga N, Rzepiela A, Melo MN, de Vries AH, Hadar A, Markvoort AJ, Nedea S, Berendsen HJC. Methods for Multiscale Modeling of Membranes Advances in Planar Lipid Bilayers and Liposomes. 15: 139-170. DOI: 10.1016/B978-0-12-396533-2.00003-3  1
2011 De Jong DH, Schäfer LV, De Vries AH, Marrink SJ, Berendsen HJ, Grubmüller H. Determining equilibrium constants for dimerization reactions from molecular dynamics simulations. Journal of Computational Chemistry. 32: 1919-28. PMID 21469160 DOI: 10.1002/Jcc.21776  1
2009 Berendsen HJC. Concluding remarks Faraday Discussions. 144: 467-481. DOI: 10.1039/b917077b  1
2007 Berendsen HJC. Simulating the physical world: Hierarchical modeling from quantum mechanics to fluid dynamics Simulating the Physical World: Hierarchical Modeling From Quantum Mechanics to Fluid Dynamics. 1-596. DOI: 10.1017/CBO9780511815348  1
2005 Van Der Spoel D, Lindahl E, Hess B, Groenhof G, Mark AE, Berendsen HJ. GROMACS: fast, flexible, and free. Journal of Computational Chemistry. 26: 1701-18. PMID 16211538 DOI: 10.1002/Jcc.20291  1
2005 van den Bosch M, Swart M, Snijders JG, Berendsen HJ, Mark AE, Oostenbrink C, van Gunsteren WF, Canters GW. Calculation of the redox potential of the protein azurin and some mutants. Chembiochem : a European Journal of Chemical Biology. 6: 738-46. PMID 15747387 DOI: 10.1002/Cbic.200400244  1
2004 Grant WD, Danson MJ, Scott DJ, Halling PJ, Engberts JBFN, Ho MW, Berendsen HJC. Life at low water activity Philosophical Transactions of the Royal Society B: Biological Sciences. 359: 1249-1267. PMID 15306380 DOI: 10.1098/rstb.2004.1502  0.01
2004 Saint-Martin H, Hess B, Berendsen HJ. An application of flexible constraints in Monte Carlo simulations of the isobaric--isothermal ensemble of liquid water and ice Ih with the polarizable and flexible mobile charge densities in harmonic oscillators model. The Journal of Chemical Physics. 120: 11133-43. PMID 15268143 DOI: 10.1063/1.1747927  1
2004 Groenhof G, Bouxin-Cademartory M, Hess B, De Visser SP, Berendsen HJ, Olivucci M, Mark AE, Robb MA. Photoactivation of the photoactive yellow protein: why photon absorption triggers a trans-to-cis Isomerization of the chromophore in the protein. Journal of the American Chemical Society. 126: 4228-33. PMID 15053611 DOI: 10.1021/Ja039557F  1
2004 Rispens T, Lensink MF, Berendsen HJC, Engberts JBFN. Molecular dynamics simulation of the effect of hydrophobie cosolutes on the neutral hydrolysis of an activated ester Journal of Physical Chemistry B. 108: 5483-5488. DOI: 10.1021/Jp037120O  1
2004 Smith LJ, Berendsen HJC, Van Gunsteren WF. Computer simulation of urea-water mixtures: A test of force field parameters for use in biomolecular simulation Journal of Physical Chemistry B. 108: 1065-1071.  1
2002 van Lune F, Manning L, Dijkstra K, Berendsen HJ, Scheek RM. Order-parameter tensor description of HPr in a medium of oriented bicelles. Journal of Biomolecular Nmr. 23: 169-79. PMID 12238589 DOI: 10.1023/A:1019877830921  1
2002 Flohil JA, Vriend G, Berendsen HJ. Completion and refinement of 3-D homology models with restricted molecular dynamics: application to targets 47, 58, and 111 in the CASP modeling competition and posterior analysis. Proteins. 48: 593-604. PMID 12211026 DOI: 10.1002/prot.10105  1
2002 Groenhof G, Lensink MF, Berendsen HJ, Mark AE. Signal transduction in the photoactive yellow protein. II. Proton transfer initiates conformational changes. Proteins. 48: 212-9. PMID 12112690 DOI: 10.1002/Prot.10135  1
2002 Groenhof G, Lensink MF, Berendsen HJ, Snijders JG, Mark AE. Signal transduction in the photoactive yellow protein. I. Photon absorption and the isomerization of the chromophore. Proteins. 48: 202-11. PMID 12112689 DOI: 10.1002/Prot.10136  1
2002 Pikkemaat MG, Linssen AB, Berendsen HJ, Janssen DB. Molecular dynamics simulations as a tool for improving protein stability. Protein Engineering. 15: 185-92. PMID 11932489 DOI: 10.1093/Protein/15.3.185  0.04
2002 Hess B, Saint-Martin H, Berendsen HJC. Flexible constraints: An adiabatic treatment of quantum degrees of freedom, with application to the flexible and polarizable mobile charge densities in harmonic oscillators model for water Journal of Chemical Physics. 116: 9602-9610. DOI: 10.1063/1.1478056  1
2002 Van den Berg PAW, Feenstra KA, Mark AE, Berendsen HJC, Visser AJWG. Dynamic conformations of flavin adenine dinucleotide: Simulated molecular dynamics of the flavin cofactor related to the time-resolved fluorescence characteristics Journal of Physical Chemistry B. 106: 8858-8869. DOI: 10.1021/jp020356s  1
2001 Choma CT, Tieleman DP, Cregut D, Serrano L, Berendsen HJ. Towards the design and computational characterization of a membrane protein. Journal of Molecular Graphics & Modelling. 20: 219-34. PMID 11766047 DOI: 10.1016/S1093-3263(01)00111-5  1
2001 Creveld LD, Meijberg W, Berendsen HJ, Pepermans HA. DSC studies of Fusarium solani pisi cutinase: consequences for stability in the presence of surfactants. Biophysical Chemistry. 92: 65-75. PMID 11527580 DOI: 10.1016/S0301-4622(01)00187-9  0.04
2001 Tieleman DP, Berendsen HJ, Sansom MS. Voltage-dependent insertion of alamethicin at phospholipid/water and octane/water interfaces. Biophysical Journal. 80: 331-46. PMID 11159406 DOI: 10.1016/S0006-3495(01)76018-3  1
2000 Berendsen HJ, Hayward S. Collective protein dynamics in relation to function. Current Opinion in Structural Biology. 10: 165-9. PMID 10753809 DOI: 10.1016/S0959-440X(00)00061-0  1
2000 Saint-Martin H, Hernández-Cobos J, Bernal-Uruchurtu MI, Ortega-Blake I, Berendsen HJC. A mobile charge densities in harmonic oscillators (MCDHO) molecular model for numerical simulations: The water-water interaction Journal of Chemical Physics. 113: 10899-10912. DOI: 10.1063/1.1324711  1
2000 Wensink EJW, Hoffmann AC, Apol MEF, Berendsen HJC. Properties of adsorbed water layers and the effect of adsorbed layers on interparticle forces by liquid bridging Langmuir. 16: 7392-7400. DOI: 10.1021/la000009e  1
2000 Tieleman DP, Van Der Spoel D, Berendsen HJC. Molecular dynamics simulations of dodecylphosphocholine micelles at three different aggregate sizes: Micellar structure and chain relaxation Journal of Physical Chemistry B. 104: 6380-6388. DOI: 10.1021/Jp001268F  1
1999 Roccatano D, Amadei A, Di Nola A, Berendsen HJ. A molecular dynamics study of the 41-56 beta-hairpin from B1 domain of protein G. Protein Science : a Publication of the Protein Society. 8: 2130-43. PMID 10548059 DOI: 10.1110/Ps.8.10.2130  1
1999 Sansom MS, Tieleman DP, Berendsen HJ. The mechanism of channel formation by alamethicin as viewed by molecular dynamics simulations. Novartis Foundation Symposium. 225: 128-41; discussion 1. PMID 10472052  1
1999 Tieleman DP, Berendsen HJ, Sansom MS. Surface binding of alamethicin stabilizes its helical structure: molecular dynamics simulations. Biophysical Journal. 76: 3186-91. PMID 10354443 DOI: 10.1016/S0006-3495(99)77470-9  1
1999 Amadei A, de Groot BL, Ceruso MA, Paci M, Di Nola A, Berendsen HJ. A kinetic model for the internal motions of proteins: diffusion between multiple harmonic wells. Proteins. 35: 283-92. PMID 10328263 DOI: 10.1002/(Sici)1097-0134(19990515)35:3<283::Aid-Prot2>3.0.Co;2-R  1
1999 Tieleman DP, Berendsen HJ, Sansom MS. An alamethicin channel in a lipid bilayer: molecular dynamics simulations. Biophysical Journal. 76: 1757-69. PMID 10096876 DOI: 10.1016/S0006-3495(99)77337-6  1
1999 de Groot BL, Vriend G, Berendsen HJ. Conformational changes in the chaperonin GroEL: new insights into the allosteric mechanism. Journal of Molecular Biology. 286: 1241-9. PMID 10047494 DOI: 10.1006/Jmbi.1998.2568  1
1999 Tieleman DP, Sansom MS, Berendsen HJ. Alamethicin helices in a bilayer and in solution: molecular dynamics simulations. Biophysical Journal. 76: 40-9. PMID 9876121 DOI: 10.1016/S0006-3495(99)77176-6  1
1999 Amadei A, Apol MEF, Chillemi G, Berendsen HJC, Di Nola A. Derivation of a general fluid equation of state based on the quasi-Gaussian entropy theory: Application to the Lennard-Jones fluid Molecular Physics. 96: 1469-1490. DOI: 10.1080/00268979909483091  1
1999 Apol MEF, Amadei A, Berendsen HJC, Di Nola A. Derivation of thermal equations of state for quantum systems using the quasi-Gaussian entropy theory Journal of Chemical Physics. 111: 4431-4441. DOI: 10.1063/1.479207  1
1999 Manoj N, Srinivas VR, Surolia A, Vijayan M, Suguna K, Ravishankar R, Schwarzenbacher R, Zeth K, Diederichs, Kostner GM, Gries A, Laggner P, Prassl R, Madhusudan, Akamine P, ... ... Berendsen HJC, ... ... Berendsen HJC, et al. Contributory presentations/posters Journal of Biosciences. 24: 33-198. DOI: 10.1007/Bf02989373  1
1999 Feenstra KA, Hess B, Berendsen HJC. Improving efficiency of large time-scale molecular dynamics simulations of hydrogen-rich systems Journal of Computational Chemistry. 20: 786-798. DOI: 10.1002/(Sici)1096-987X(199906)20:8<786::Aid-Jcc5>3.0.Co;2-B  1
1999 Lensink MF, Mavri J, Berendsen HJC. Simulation of slow reaction with quantum character: Neutral hydrolysis of carboxylic ester Journal of Computational Chemistry. 20: 886-895.  1
1998 Tieleman DP, Breed J, Berendsen HJ, Sansom MS. Alamethicin channels in a membrane: molecular dynamics simulations. Faraday Discussions. 209-23; discussion 2. PMID 10822611 DOI: 10.1039/A806266H  1
1998 Tieleman DP, Forrest LR, Sansom MS, Berendsen HJ. Lipid properties and the orientation of aromatic residues in OmpF, influenza M2, and alamethicin systems: molecular dynamics simulations. Biochemistry. 37: 17554-61. PMID 9860871 DOI: 10.1021/Bi981802Y  1
1998 Vriend G, Berendsen HJ, van den Burg B, Venema G, Eijsink VG. Early steps in the unfolding of thermolysin-like proteases. The Journal of Biological Chemistry. 273: 35074-7. PMID 9857041 DOI: 10.1074/Jbc.273.52.35074  1
1998 Creveld LD, Amadei A, van Schaik RC, Pepermans HA, de Vlieg J, Berendsen HJ. Identification of functional and unfolding motions of cutinase as obtained from molecular dynamics computer simulations. Proteins. 33: 253-64. PMID 9779792 DOI: 10.1002/(Sici)1097-0134(19981101)33:2<253::Aid-Prot9>3.0.Co;2-J  1
1998 Sansom MS, Tieleman DP, Forrest LR, Berendsen HJ. Molecular dynamics simulations of membranes with embedded proteins and peptides: porin, alamethicin and influenza virus M2. Biochemical Society Transactions. 26: 438-43. PMID 9765893 DOI: 10.1042/Bst0260438  1
1998 Tieleman DP, Berendsen HJ. A molecular dynamics study of the pores formed by Escherichia coli OmpF porin in a fully hydrated palmitoyloleoylphosphatidylcholine bilayer. Biophysical Journal. 74: 2786-801. PMID 9635733 DOI: 10.1016/S0006-3495(98)77986-X  1
1998 de Groot BL, Hayward S, van Aalten DM, Amadei A, Berendsen HJ. Domain motions in bacteriophage T4 lysozyme: a comparison between molecular dynamics and crystallographic data. Proteins. 31: 116-27. PMID 9593186 DOI: 10.1002/(Sici)1097-0134(19980501)31:2<116::Aid-Prot2>3.0.Co;2-K  1
1998 Langedijk JP, de Groot BL, Berendsen HJ, van Oirschot JT. Structural homology of the central conserved region of the attachment protein G of respiratory syncytial virus with the fourth subdomain of 55-kDa tumor necrosis factor receptor. Virology. 243: 293-302. PMID 9568029 DOI: 10.1006/Viro.1998.9066  1
1998 Veltman OR, Vriend G, Berendsen HJ, Van den Burg B, Venema G, Eijsink VG. A single calcium binding site is crucial for the calcium-dependent thermal stability of thermolysin-like proteases. Biochemistry. 37: 5312-9. PMID 9548763 DOI: 10.1021/Bi9725879  1
1998 Hayward S, Berendsen HJ. Systematic analysis of domain motions in proteins from conformational change: new results on citrate synthase and T4 lysozyme. Proteins. 30: 144-54. PMID 9489922 DOI: 10.1002/(Sici)1097-0134(19980201)30:2<144::Aid-Prot4>3.0.Co;2-N  1
1998 Roccatano D, Amadei A, Apol MEF, Di Nola A, Berendsen HJC. Application of the quasi-Gaussian entropy theory to molecular dynamics simulations of Lennard-Jones fluids Journal of Chemical Physics. 109: 6358-6363. DOI: 10.1063/1.477278  1
1998 Apol MEF, Amadei A, Berendsen HJC. On the use of the quasi-Gaussian entropy theory in noncanonical ensembles. II. Prediction of density dependence of thermodynamic properties Journal of Chemical Physics. 109: 3017-3027. DOI: 10.1063/1.476894  1
1998 Amadei A, Apol MEF, Berendsen HJC. On the use of the quasi-Gaussian entropy theory in noncanonical ensembles. I. Prediction of temperature dependence of thermodynamic properties Journal of Chemical Physics. 109: 3004-3016. DOI: 10.1063/1.476893  1
1998 Van Der Spoel D, Van Maaren PJ, Berendsen HJC. A systematic study of water models for molecular simulation: Derivation of water models optimized for use with a reaction field Journal of Chemical Physics. 108: 10220-10230. DOI: 10.1063/1.476482  1
1998 Roccatano D, Berendsen HJC, D'Angelo P. Assessment of the validity of intermolecular potential models used in molecular dynamics simulations by extended x-ray absorption fine structure spectroscopy: A case study of Sr2+ in methanol solution Journal of Chemical Physics. 108: 9487-9497. DOI: 10.1063/1.476398  1
1997 Tieleman DP, Marrink SJ, Berendsen HJ. A computer perspective of membranes: molecular dynamics studies of lipid bilayer systems. Biochimica Et Biophysica Acta. 1331: 235-70. PMID 9512654 DOI: 10.1016/S0304-4157(97)00008-7  1
1997 van Aalten DM, Conn DA, de Groot BL, Berendsen HJ, Findlay JB, Amadei A. Protein dynamics derived from clusters of crystal structures. Biophysical Journal. 73: 2891-6. PMID 9414203 DOI: 10.1016/S0006-3495(97)78317-6  1
1997 de Groot BL, van Aalten DM, Scheek RM, Amadei A, Vriend G, Berendsen HJ. Prediction of protein conformational freedom from distance constraints. Proteins. 29: 240-51. PMID 9329088 DOI: 10.1002/(Sici)1097-0134(199710)29:2<240::Aid-Prot11>3.0.Co;2-O  1
1997 van der Spoel D, Berendsen HJ. Molecular dynamics simulations of Leu-enkephalin in water and DMSO. Biophysical Journal. 72: 2032-41. PMID 9129806 DOI: 10.1016/S0006-3495(97)78847-7  1
1997 Hayward S, Kitao A, Berendsen HJ. Model-free methods of analyzing domain motions in proteins from simulation: a comparison of normal mode analysis and molecular dynamics simulation of lysozyme. Proteins. 27: 425-37. PMID 9094744 DOI: 10.1002/(Sici)1097-0134(199703)27:3<425::Aid-Prot10>3.0.Co;2-N  0.04
1997 Amadei A, Apol MEF, Berendsen HJC. Extensions of the quasi-Gaussian entropy theory Journal of Chemical Physics. 106: 1893-1912. DOI: 10.1063/1.473328  1
1997 Hess B, Bekker H, Berendsen HJC, Fraaije JGEM. LINCS: A Linear Constraint Solver for molecular simulations Journal of Computational Chemistry. 18: 1463-1472. DOI: 10.1002/(Sici)1096-987X(199709)18:12<1463::Aid-Jcc4>3.0.Co;2-H  1
1997 Van Aalten DMF, De Groot BL, Findlay JBC, Berendsen HJC, Amadei A. A comparison of techniques for calculating protein essential dynamics Journal of Computational Chemistry. 18: 169-181. DOI: 10.1002/(Sici)1096-987X(19970130)18:2<169::Aid-Jcc3>3.0.Co;2-T  1
1996 Lensink MF, Mavri J, Berendsen HJ. Simultaneous integration of mixed quantum-classical systems by density matrix evolution equations using interaction representation and adaptive time step integrator. Journal of Computational Chemistry. 17: 1287-95. PMID 25400147 DOI: 10.1002/(Sici)1096-987X(199608)17:11<1287::Aid-Jcc1>3.0.Co;2-I  1
1996 van der Spoel D, Berendsen HJ. Determination of proton transfer rate constants using Ab initio, molecular dynamics and density matrix evolution calculations. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 624-37. PMID 9390263  1
1996 van der Spoel D, Vogel HJ, Berendsen HJ. Molecular dynamics simulations of N-terminal peptides from a nucleotide binding protein. Proteins. 24: 450-66. PMID 9162946 DOI: 10.1002/(Sici)1097-0134(199604)24:4<450::Aid-Prot5>3.0.Co;2-I  1
1996 van der Spoel D, Feenstra KA, Hemminga MA, Berendsen HJ. Molecular modeling of the RNA binding N-terminal part of cowpea chlorotic mottle virus coat protein in solution with phosphate ions. Biophysical Journal. 71: 2920-32. PMID 8968565 DOI: 10.1016/S0006-3495(96)79493-6  1
1996 de Groot BL, Amadei A, Scheek RM, van Nuland NA, Berendsen HJ. An extended sampling of the configurational space of HPr from E. coli. Proteins. 26: 314-22. PMID 8953652 DOI: 10.1002/(Sici)1097-0134(199611)26:3<314::Aid-Prot7>3.0.Co;2-D  1
1996 van der Spoel D, van Buuren AR, Tieleman DP, Berendsen HJ. Molecular dynamics simulations of peptides from BPTI: a closer look at amide-aromatic interactions. Journal of Biomolecular Nmr. 8: 229-38. PMID 8953214  1
1996 Lijnzaad P, Berendsen HJ, Argos P. A method for detecting hydrophobic patches on protein surfaces. Proteins. 26: 192-203. PMID 8916227 DOI: 10.1002/(Sici)1097-0134(199610)26:2<192::Aid-Prot9>3.0.Co;2-I  1
1996 van Aalten DM, de Groot BL, Berendsen HJ, Findlay JB. Conformational analysis of retinoids and restriction of their dynamics by retinoid-binding proteins. The Biochemical Journal. 319: 543-50. PMID 8912693 DOI: 10.1042/Bj3190543  1
1996 Amadei A, Linssen AB, de Groot BL, van Aalten DM, Berendsen HJ. An efficient method for sampling the essential subspace of proteins. Journal of Biomolecular Structure & Dynamics. 13: 615-25. PMID 8906882 DOI: 10.1080/07391102.1996.10508874  1
1996 van der Spoel D, de Groot BL, Hayward S, Berendsen HJ, Vogel HJ. Bending of the calmodulin central helix: a theoretical study. Protein Science : a Publication of the Protein Society. 5: 2044-53. PMID 8897605 DOI: 10.1002/Pro.5560051011  1
1996 de Groot BL, van Aalten DM, Amadei A, Berendsen HJ. The consistency of large concerted motions in proteins in molecular dynamics simulations. Biophysical Journal. 71: 1707-13. PMID 8889148 DOI: 10.1016/S0006-3495(96)79372-4  1
1996 Lijnzaad P, Berendsen HJ, Argos P. Hydrophobic patches on the surfaces of protein structures. Proteins. 25: 389-97. PMID 8844873 DOI: 10.1002/(Sici)1097-0134(199607)25:3<389::Aid-Prot10>3.0.Co;2-E  1
1996 Marrink SJ, Jähnig F, Berendsen HJ. Proton transport across transient single-file water pores in a lipid membrane studied by molecular dynamics simulations. Biophysical Journal. 71: 632-47. PMID 8842203 DOI: 10.1016/S0006-3495(96)79264-0  1
1996 van Aalten DM, Amadei A, Bywater R, Findlay JB, Berendsen HJ, Sander C, Stouten PF. A comparison of structural and dynamic properties of different simulation methods applied to SH3. Biophysical Journal. 70: 684-92. PMID 8789085 DOI: 10.1016/S0006-3495(96)79608-X  1
1996 de Groot BL, Amadei A, van Aalten DM, Berendsen HJ. Toward an exhaustive sampling of the configurational spaces of the two forms of the peptide hormone guanylin. Journal of Biomolecular Structure & Dynamics. 13: 741-51. PMID 8723770 DOI: 10.1080/07391102.1996.10508888  1
1996 Berendsen HJ. Bio-molecular dynamics comes of age. Science (New York, N.Y.). 271: 954-5. PMID 8584930 DOI: 10.1126/Science.271.5251.954  0.01
1996 Amadei A, Roccatano D, Apol MEF, Berendsen HJC, Di Nola A. Prediction of the liquid-vapor equilibrium pressure using the quasi-Gaussian entropy theory Journal of Chemical Physics. 105: 7022-7025. DOI: 10.1063/1.472503  1
1996 Marrink S, Sok RM, Berendsen HJC. Free volume properties of a simulated lipid membrane Journal of Chemical Physics. 104: 9090-9099. DOI: 10.1063/1.471442  1
1996 Apol MEF, Amadei A, Berendsen HJC. Application of the quasi-Gaussian entropy theory to the calculation of thermodynamic properties of water and methane in the liquid and gas phase Journal of Chemical Physics. 104: 6665-6678. DOI: 10.1063/1.471385  1
1996 López Cascales JJ, De La Torre JG, Marrink SJ, Berendsen HJC. Molecular dynamics simulation of a charged biological membrane Journal of Chemical Physics. 104: 2713-2720. DOI: 10.1063/1.470992  1
1996 Amadei A, Apol MEF, Di Nola A, Berendsen HJC. The quasi-Gaussian entropy theory: Free energy calculations based on the potential energy distribution function Journal of Chemical Physics. 104: 1560-1574. DOI: 10.1063/1.470744  1
1996 Marrink SJ, Tieleman DP, Van Buuren AR, Berendsen HJC. Membranes and water: An interesting relationship Faraday Discussions. 103: 191-201. DOI: 10.1039/Fd9960300191  1
1996 Buuren ARv, Tieleman DP, Vlieg Jd, Berendsen HJC. Cosurfactants lower surface tension of the diglyceride/water interface: A molecular dynamics study Langmuir. 12: 2570-2579. DOI: 10.1021/La960113P  1
1996 Marrink SJ, Berendsen HJC. Permeation Process of Small Molecules across Lipid Membranes Studied by Molecular Dynamics Simulations The Journal of Physical Chemistry. 100: 16729-16738. DOI: 10.1021/Jp952956F  1
1996 Löpez Cascales JJ, Berendsen HJC, De La Garcia Torre J. Molecular dynamics simulation of water between two charged layers of dipalmitoylphosphatidylserine Journal of Physical Chemistry. 100: 8621-8627. DOI: 10.1021/Jp9516405  1
1996 Apol MEF, Amadei A, Berendsen HJC. Derivation of a thermodynamic closure relation in the isothermal-isobaric ensemble using quasi-Gaussian entropy theory Chemical Physics Letters. 256: 172-178. DOI: 10.1016/0009-2614(96)00419-8  1
1996 Berendsen HJC, Mavri J. Approach to nonadiabatic transitions by density matrix evolution and molecular dynamics simulations International Journal of Quantum Chemistry. 57: 975-983. DOI: 10.1002/(Sici)1097-461X(1996)57:5<975::Aid-Qua18>3.0.Co;2-W  1
1995 van Aalten DM, Findlay JB, Amadei A, Berendsen HJ. Essential dynamics of the cellular retinol-binding protein--evidence for ligand-induced conformational changes. Protein Engineering. 8: 1129-35. PMID 8819978 DOI: 10.1093/Protein/8.11.1129  1
1995 van Aalten DM, Amadei A, Linssen AB, Eijsink VG, Vriend G, Berendsen HJ. The essential dynamics of thermolysin: confirmation of the hinge-bending motion and comparison of simulations in vacuum and water. Proteins. 22: 45-54. PMID 7675786 DOI: 10.1002/Prot.340220107  1
1995 Bekker H, Dijkstra EJ, Renardus MKR, Berendsen HJC. An Efficient, Box Shape Independent Nonbonded Force And Virial Algorithm For Molecular-Dynamics Molecular Simulation. 14: 137-151. DOI: 10.1080/08927029508022012  1
1995 Jordan PC, van Maaren PJ, Mavri J, van der Spoel D, Berendsen HJC. Towards phase transferable potential functions: Methodology and application to nitrogen The Journal of Chemical Physics. 103: 2272-2285. DOI: 10.1063/1.469703  0.01
1995 Mavri J, Berendsen HJC. Calculation Of The Proton-Transfer Rate Using Density-Matrix Evolution And Molecular-Dynamics Simulations - Inclusion Of The Proton Excited-States The Journal of Physical Chemistry. 99: 12711-12717. DOI: 10.1021/J100034A005  1
1995 Buuren ARv, Marrink S, Berendsen HJC. Characterisation of aqueous interfaces with different hydrophobicities by molecular dynamics Colloids and Surfaces a: Physicochemical and Engineering Aspects. 102: 143-157. DOI: 10.1016/0927-7757(95)03227-5  1
1995 Berendsen HJC, Spoel Dvd, Drunen Rv. GROMACS: A message-passing parallel molecular dynamics implementation Computer Physics Communications. 91: 43-56. DOI: 10.1016/0010-4655(95)00042-E  1
1995 Amadei A, Linssen ABM, Groot BLD, Berendsen HJC. Essential degrees of freedom of proteins Molecular Engineering. 5: 85-93. DOI: 10.1007/Bf00999579  1
1995 Ahlström P, Lausmaa J, Löfgren P, Berendsen HJC. Biomolecules at Phase Boundaries Molecular Engineering. 5: 371-379. DOI: 10.1007/978-94-011-0497-5_29  1
1994 Mavri J, Berendsen HJ. Dynamical simulation of a quantum harmonic oscillator in a noble-gas bath by density-matrix evolution. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 50: 198-204. PMID 9961957 DOI: 10.1103/Physreve.50.198  1
1994 van Nuland NA, Hangyi IW, van Schaik RC, Berendsen HJ, van Gunsteren WF, Scheek RM, Robillard GT. The high-resolution structure of the histidine-containing phosphocarrier protein HPr from Escherichia coli determined by restrained molecular dynamics from nuclear magnetic resonance nuclear Overhauser effect data. Journal of Molecular Biology. 237: 544-59. PMID 8158637 DOI: 10.1006/Jmbi.1994.1254  1
1994 Egberts E, Marrink SJ, Berendsen HJ. Molecular dynamics simulation of a phospholipid membrane. European Biophysics Journal : Ebj. 22: 423-36. PMID 8149924 DOI: 10.1007/Bf00180163  1
1994 Leenders R, van Gunsteren WF, Berendsen HJ, Visser AJ. Molecular dynamics simulations of oxidized and reduced Clostridium beijerinckii flavodoxin. Biophysical Journal. 66: 634-45. PMID 8011895 DOI: 10.1016/S0006-3495(94)80837-9  1
1994 Di Nola A, Roccatano D, Berendsen HJ. Molecular dynamics simulation of the docking of substrates to proteins. Proteins. 19: 174-82. PMID 7937732 DOI: 10.1002/Prot.340190303  1
1994 Tissen JT, Drenth J, Berendsen HJ, Fraaije JG. Microhydrodynamics simulation of protein crystallization. I. Static calculations. Biophysical Journal. 67: 1801-5. PMID 7858118 DOI: 10.1016/S0006-3495(94)80661-7  1
1994 Mavri J, Lensink M, Berendsen HJC. Treatment Of Inelastic-Collisions Of A Particle With A Quantum Harmonic-Oscillator By Density-Matrix Evolution Molecular Physics. 82: 1249-1257. DOI: 10.1080/00268979400100884  1
1994 Marrink S, Berendsen HJC. Simulation of Water Transport through a Lipid Membrane The Journal of Physical Chemistry. 98: 4155-4168. DOI: 10.1021/J100066A040  1
1994 Mavri J, Berendsen HJC. Treatment Of Nonadiabatic Transitions By Density-Matrix Evolution And Molecular-Dynamics Simulations Journal of Molecular Structure. 322: 1-7. DOI: 10.1016/0022-2860(94)87015-2  1
1993 Shi YY, Mark AE, Wang CX, Huang F, Berendsen HJ, van Gunsteren WF. Can the stability of protein mutants be predicted by free energy calculations? Protein Engineering. 6: 289-95. PMID 8506263 DOI: 10.1093/protein/6.3.289  1
1993 Jones ST, Ahlström P, Berendsen HJ, Pickersgill RW. Molecular dynamics simulation of a phospholipase A2-substrate complex. Biochimica Et Biophysica Acta. 1162: 135-42. PMID 8448177 DOI: 10.1016/0167-4838(93)90139-I  1
1993 Van Buuren AR, Berendsen HJ. Molecular dynamics simulation of the stability of a 22-residue alpha-helix in water and 30% trifluoroethanol. Biopolymers. 33: 1159-66. PMID 8364151 DOI: 10.1002/bip.360330802  1
1993 Heiner AP, Berendsen HJ, van Gunsteren WF. Structure prediction of subtilisin BPN' mutants using molecular dynamics methods. Protein Engineering. 6: 397-408. PMID 8332597 DOI: 10.1093/Protein/6.4.397  1
1993 van Schaik RC, Berendsen HJ, Torda AE, van Gunsteren WF. A structure refinement method based on molecular dynamics in four spatial dimensions. Journal of Molecular Biology. 234: 751-62. PMID 8254671 DOI: 10.1006/Jmbi.1993.1624  1
1993 Amadei A, Linssen AB, Berendsen HJ. Essential dynamics of proteins. Proteins. 17: 412-25. PMID 8108382 DOI: 10.1002/Prot.340170408  1
1993 Berendsen HJC, Marrink S. Molecular dynamics of water transport through membranes: Water from solvent to solute Pure and Applied Chemistry. 65: 2513-2520. DOI: 10.1351/Pac199365122513  1
1993 Juffer AH, Berendsen HJC. Dynamic Surface Boundary-Conditions - A Simple Boundary Model For Molecular-Dynamics Simulations Molecular Physics. 79: 623-644. DOI: 10.1080/00268979300101501  1
1993 Marrink SJ, Berkowitz M, Berendsen HJC. Molecular dynamics simulation of a membrane/water interface: the ordering of water and its relation to the hydration force Langmuir. 9: 3122-3131. DOI: 10.1021/La00035A062  0.01
1993 Ahlstrom P, Berendsen HJC. A Molecular-Dynamics Study Of Lecithin Monolayers The Journal of Physical Chemistry. 97: 13691-13702. DOI: 10.1021/J100153A044  1
1993 Berendsen HJC, Mavri J. Quantum Simulation Of Reaction Dynamics By Density-Matrix Evolution The Journal of Physical Chemistry. 97: 13464-13468. DOI: 10.1021/J100153A009  1
1993 Buuren ARv, Marrink SJ, Berendsen HJC. A Molecular Dynamics Study of the Decane/Water Interface The Journal of Physical Chemistry. 97: 9206-9212. DOI: 10.1021/J100138A023  1
1992 van Schaik RC, van Gunsteren WF, Berendsen HJ. Conformational search by potential energy annealing: algorithm and application to cyclosporin A. Journal of Computer-Aided Molecular Design. 6: 97-112. PMID 1624960 DOI: 10.1007/Bf00129422  1
1992 Heiner AP, Berendsen HJ, van Gunsteren WF. MD simulation of subtilisin BPN' in a crystal environment. Proteins. 14: 451-64. PMID 1438183 DOI: 10.1002/prot.340140406  1
1992 Berendsen HJC. Rationale for using NMR to study water relations in foods and biological tissues Trends in Food Science and Technology. 3: 202-205. DOI: 10.1016/0924-2244(92)90190-8  1
1991 Mark AE, Berendsen HJ, van Gunsteren WF. Conformational flexibility of aqueous monomeric and dimeric insulin: a molecular dynamics study. Biochemistry. 30: 10866-72. PMID 1932009 DOI: 10.1021/BI00109A009  0.44
1991 Vriend G, Berendsen HJ, van der Zee JR, van den Burg B, Venema G, Eijsink VG. Stabilization of the neutral protease of Bacillus stearothermophilus by removal of a buried water molecule. Protein Engineering. 4: 941-5. PMID 1817257  0.72
1991 van Gunsteren WF, Gros P, Torda AE, Berendsen HJ, van Schaik RC. On deriving spatial protein structure from NMR or X-ray diffraction data. Ciba Foundation Symposium. 161: 150-9; discussion 15. PMID 1814692  1
1991 Eijsink VG, van den Burg B, Vriend G, Berendsen HJ, Venema G. Thermostability of Bacillus subtilis neutral protease. Biochemistry International. 24: 517-25. PMID 1772430  0.72
1991 Mark AE, van Gunsteren WF, Berendsen HJC. Calculation of relative free energy via indirect pathways The Journal of Chemical Physics. 94: 3808-3816. DOI: 10.1063/1.459753  1
1991 Berendsen HJC. Molecular dynamics studies of proteins and nucleic acids: Current Opinion in Structural Biology 1991, 1:191–195 Current Opinion in Structural Biology. 1: 191-195. DOI: 10.1016/0959-440X(91)90060-7  1
1991 Juffer AH, Berendsen HJC. Abstract of paper to appear in future issuesThe electric potential of a macromolecule in a solvent: A fundamental approach Journal of Computational Physics. 93. DOI: 10.1016/0021-9991(91)90084-X  1
1991 Juffer AJ, Botta EFF, Keulen BAMv, Ploeg Avd, Berendsen HJC. The electric potential of a macromolecule in a solvent: A fundamental approach Journal of Computational Physics. 97: 144-171. DOI: 10.1016/0021-9991(91)90043-K  1
1990 van Mierlo CP, Lijnzaad P, Vervoort J, Müller F, Berendsen HJ, de Vlieg J. Tertiary structure of two-electron reduced Megasphaera elsdenii flavodoxin and some implications, as determined by two-dimensional 1H-NMR and restrained molecular dynamics. European Journal of Biochemistry / Febs. 194: 185-98. PMID 2253614 DOI: 10.1111/J.1432-1033.1990.Tb19444.X  1
1990 Kamman RL, Go KG, Berendsen HJ. Proton-nuclear magnetic resonance relaxation times in brain edema. Advances in Neurology. 52: 401-5. PMID 2168666  1
1990 Gunsteren WFv, Berendsen HJC. Computer-Simulation Of Molecular-Dynamics - Methodology, Applications, And Perspectives In Chemistry Angewandte Chemie. 29: 992-1023. DOI: 10.1002/Anie.199009921  1
1990 van Gunsteren WF, Berendsen HJC. Moleküldynamik-Computersimulationen; Methodik, Anwendungen und Perspektiven in der Chemie Angewandte Chemie. 102: 1020-1055. DOI: 10.1002/Ange.19901020907  1
1989 Makinen MW, Troyer JM, van der Werff H, Berendsen HJ, van Gunsteren WF. Dynamical structure of carboxypeptidase A. Journal of Molecular Biology. 207: 201-16. PMID 2738924 DOI: 10.1016/0022-2836(89)90451-8  1
1989 Kamman RL, Stomp GP, Berendsen HJ. Unified multiple-feature color display for MR images. Magnetic Resonance in Medicine. 9: 240-53. PMID 2716507  1
1989 de Vlieg J, Berendsen HJ, van Gunsteren WF. An NMR-based molecular dynamics simulation of the interaction of the lac repressor headpiece and its operator in aqueous solution. Proteins. 6: 104-27. PMID 2622902 DOI: 10.1002/prot.340060203  0.52
1988 Kamman RL, Go KG, Brouwer W, Berendsen HJ. Nuclear magnetic resonance relaxation in experimental brain edema: effects of water concentration, protein concentration, and temperature. Magnetic Resonance in Medicine. 6: 265-74. PMID 3362061  1
1988 Berendsen HJ. Dynamic simulation as an essential tool in molecular modeling. Journal of Computer-Aided Molecular Design. 2: 217-21. PMID 3236048 DOI: 10.1007/Bf01531994  0.01
1988 de Vlieg J, Scheek RM, van Gunsteren WF, Berendsen HJ, Kaptein R, Thomason J. Combined procedure of distance geometry and restrained molecular dynamics techniques for protein structure determination from nuclear magnetic resonance data: application to the DNA binding domain of lac repressor from Escherichia coli. Proteins. 3: 209-18. PMID 3047742 DOI: 10.1002/Prot.340030402  1
1988 Van Gunsteren WF, Berendsen HJC. A Leap-frog Algorithm for Stochastic Dynamics Molecular Simulation. 1: 173-185. DOI: 10.1080/08927028808080941  1
1987 Kamman RL, Bakker CJ, van Dijk P, Stomp GP, Heiner AP, Berendsen HJ. Multi-exponential relaxation analysis with MR imaging and NMR spectroscopy using fat-water systems. Magnetic Resonance Imaging. 5: 381-92. PMID 3695824  1
1987 van Gunsteren WF, Berendsen HJ. Thermodynamic cycle integration by computer simulation as a tool for obtaining free energy differences in molecular chemistry. Journal of Computer-Aided Molecular Design. 1: 171-6. PMID 3504214 DOI: 10.1007/BF01676960  1
1987 Kamman RL, Go KG, Vencken LM, Berendsen HJ. Interpretation of magnetic resonance images making use of in vitro examinations of spinal tissue. Spine. 12: 257-63. PMID 3035729  1
1987 Berendsen HJC, Grigera JR, Straatsma TP. The Missing Term In Effective Pair Potentials The Journal of Physical Chemistry. 91: 6269-6271. DOI: 10.1021/J100308A038  1
1987 Berendsen HJC. Biophysical Applications Of Molecular-Dynamics Computer Physics Communications. 44: 233-242. DOI: 10.1016/0010-4655(87)90078-6  1
1986 Van Gunsteren WF, Berendsen HJ, Geurtsen RG, Zwinderman HR. A molecular dynamics computer simulation of an eight-base-pair DNA fragment in aqueous solution: comparison with experimental two-dimensional NMR data. Annals of the New York Academy of Sciences. 482: 287-303. PMID 3471112 DOI: 10.1111/J.1749-6632.1986.Tb20962.X  1
1986 Berendsen HJ, Van Gunsteren WF, Zwinderman HR, Geurtsen RG. Simulations of proteins in water. Annals of the New York Academy of Sciences. 482: 269-86. PMID 3471111  1
1986 Straatsma TP, Berendsen HJC, Stam AJ. Estimation of statistical errors in molecular simulation calculations Molecular Physics. 57: 89-95. DOI: 10.1080/00268978600100071  1
1985 Kamman RL, Go KG, Stomp GP, Hulstaert CE, Berendsen HJ. Changes of relaxation times T1 and T2 in rat tissues after biopsy and fixation. Magnetic Resonance Imaging. 3: 245-50. PMID 3908869  1
1984 van Gunsteren WF, Berendsen HJ. Computer simulation as a tool for tracing the conformational differences between proteins in solution and in the crystalline state. Journal of Molecular Biology. 176: 559-64. PMID 6205158 DOI: 10.1016/0022-2836(84)90177-3  1
1984 Kamman RL, Go KG, Muskiet FA, Stomp GP, Van Dijk P, Berendsen HJ. Proton spin relaxation studies of fatty tissue and cerebral white matter. Magnetic Resonance Imaging. 2: 211-20. PMID 6099458  1
1984 Edholm O, Berendsen HJC. Entropy Estimation From Simulations Of Non-Diffusive Systems Molecular Physics. 51: 1011-1028. DOI: 10.1080/00268978400100661  1
1984 Berendsen HJC, Postma JPM, Gunsteren WFv, DiNola A, Haak JR. Molecular dynamics with coupling to an external bath Journal of Chemical Physics. 81: 3684-3690. DOI: 10.1063/1.448118  1
1984 Postma JPM, Berendsen HJC, Straatsma TP. Intramolecular Vibrations From Molecular Dynamics Simulations Of Liquid Water Le Journal De Physique Colloques. 45. DOI: 10.1051/Jphyscol:1984703  1
1984 van Gunsteren WF, Berendsen HJC, Colonna F, Perahia D, Hollenberg JP, Lellouch D. On searching neighbors in computer simulations of macromolecular systems Journal of Computational Chemistry. 5: 272-279. DOI: 10.1002/Jcc.540050311  0.16
1984 Hermans J, Berendsen HJC, Gunsteren WFV, Postma JPM. A Consistent Empirical Potential For Water-Protein Interactions Biopolymers. 23: 1513-1518. DOI: 10.1002/Bip.360230807  1
1983 Go KG, van Dijk P, Luiten AL, Brouwer-van Herwijnen AA, van der Leeuw IC, Kamman RL, Vencken LM, Wilmink J, Berendsen HJ. Interpretation of nuclear magnetic resonance tomograms of the brain. Journal of Neurosurgery. 59: 574-84. PMID 6886775 DOI: 10.3171/jns.1983.59.4.0574  1
1983 van Gunsteren WF, Berendsen HJ, Hermans J, Hol WG, Postma JP. Computer simulation of the dynamics of hydrated protein crystals and its comparison with x-ray data. Proceedings of the National Academy of Sciences of the United States of America. 80: 4315-9. PMID 6576339 DOI: 10.1073/Pnas.80.14.4315  1
1983 Ploeg Pvd, Berendsen H. Molecular-Dynamics Of A Bilayer-Membrane Molecular Physics. 49: 233-248. DOI: 10.1080/00268978300101131  1
1983 Edholm O, Berendsen H, Ploeg Pvd. Conformational Entropy Of A Bilayer-Membrane Derived From A Molecular-Dynamics Simulation Molecular Physics. 48: 379-388. DOI: 10.1080/00268978300100281  1
1983 Visser AJWG, Wit JLD, Mueller F, Berendsen HJC. Water Relaxation Measurements On Semiquinones Of Various Flavoproteins Cheminform. 14. DOI: 10.1002/Chin.198314084  1
1982 Van Gunsteren WF, Berendsen HJ. Molecular dynamics: perspective for complex systems. Biochemical Society Transactions. 10: 301-5. PMID 7141081 DOI: 10.1042/BST0100301  1
1982 Gunsteren WFv, Berendsen HJC. On the fluctuation-dissipation theorem for interacting brownian particles Molecular Physics. 47: 721-723. DOI: 10.1080/00268978200100542  1
1982 Gunsteren WFv, Berendsen HJC. Algorithms For Brownian Dynamics Molecular Physics. 45: 637-647. DOI: 10.1080/00268978200100491  1
1982 Ploeg Pvd, Berendsen H. Molecular-Dynamics Simulation Of A Bilayer-Membrane Journal of Chemical Physics. 76: 3271-3276. DOI: 10.1063/1.443321  1
1982 Postma JPM, Berendsen HJC, Haak JR. Thermodynamics Of Cavity Formation In Water - A Molecular-Dynamics Study Faraday Symposia of the Chemical Society. 17: 55-67. DOI: 10.1039/Fs9821700055  1
1982 Visser AJWG, Wit JLD, Müller F, Berendsen HJC. Water Relaxation Measurements On Semiquinones Of Various Flavoproteins Helvetica Chimica Acta. 65: 2422-2430. DOI: 10.1002/Hlca.19820650807  1
1981 Post JF, de Ruiter EE, Berendsen HJ. A fluorine NMR study of model membranes containing 19F-labeled phospholipids and an intrinsic membrane protein. Febs Letters. 132: 257-60. PMID 7297695  0.96
1981 Gunsteren WFv, Berendsen HJC, Rullmann JAC. Stochastic Dynamics For Molecules With Constraints Brownian Dynamics Of Normal-Alkanes Molecular Physics. 44: 69-95. DOI: 10.1080/00268978100102291  1
1979 Grigera JR, Berendsen HJC. The molecular details of collagen hydration Biopolymers. 18: 47-57. DOI: 10.1002/Bip.1979.360180106  1
1979 Grigera JR, Vericat F, Hallenga K, Berendsen HJC. Dielectric properties of hydrated collagen Biopolymers. 18: 35-45. DOI: 10.1002/Bip.1979.360180105  1
1978 Hol WG, van Duijnen PT, Berendsen HJ. The alpha-helix dipole and the properties of proteins. Nature. 273: 443-6. PMID 661956 DOI: 10.1038/273443A0  1
1978 Gunsteren WFv, Berendsen HJC, Rullmann JAC. Inclusion of reaction fields in molecular dynamics. Application to liquid water Faraday Discussions of the Chemical Society. 66: 58-70. DOI: 10.1039/Dc9786600058  1
1977 Edzes HT, Ginzburg M, Ginzburg BZ, Berendsen HJ. The physical state of alkali ions in a Halobacterium: some NMR results. Experientia. 33: 732-4. PMID 891727  0.32
1977 van Gunsteren W, Berendsen H. Algorithms for macromolecular dynamics and constraint dynamics Molecular Physics. 34: 1311-1327. DOI: 10.1080/00268977700102571  1
1977 Ryckaert JP, Ciccotti G, Berendsen HJC. Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes Journal of Computational Physics. 23: 327-341. DOI: 10.1016/0021-9991(77)90098-5  1
1976 Robillard GT, Tarr CE, Vosman F, Berendsen HJ. Similarity of the crystal and solution structure of yeast tRNAPhe. Nature. 262: 363-9. PMID 785273 DOI: 10.1038/262363A0  1
1975 Edzes HT, Berendsen HJ. The physical state of diffusible ions in cells. Annual Review of Biophysics and Bioengineering. 4: 265-85. PMID 1098557 DOI: 10.1146/ANNUREV.BB.04.060175.001405  0.76
1973 Berendsen HJ, Edzes HT. The observation and general interpretation of sodium magnetic resonance in biological material. Annals of the New York Academy of Sciences. 204: 459-85. PMID 4513164 DOI: 10.1111/J.1749-6632.1973.Tb30799.X  0.8
1972 Edzes HT, Rupprecht A, Berendsen HJ. Observation of quadrupolar NMR signals of 7 Li and 23 Na in hydrated oriented DNA. Biochemical and Biophysical Research Communications. 46: 790-4. PMID 5061929 DOI: 10.1016/S0006-291X(72)80210-9  0.52
1972 Samulski ET, Berendsen HJC. Proton, Deuteron, and Nitrogen Resonance of Dimethylformamide in Nematic Polypeptide Liquid Crystals The Journal of Chemical Physics. 56: 3920-3928. DOI: 10.1063/1.1677796  0.01
1969 Vries JJD, Berendsen HJC. Nuclear Magnetic Resonance Measurements on a Macroscopically Ordered Smectic Liquid Crystalline Phase Nature. 221: 1139-1140. DOI: 10.1038/2211139A0  1
1962 Berendsen HJC. Nuclear magnetic resonance study of collagen hydration Journal of Chemical Physics. 36: 3297-3305. DOI: 10.1063/1.1732460  1
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