Jonathan S. Marvin, Ph.D. - Related publications

Affiliations: 
2001 Duke University, Durham, NC 
Area:
Biochemistry
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Perfilov MM, Gurskaya NG, Serebrovskaya EO, Melnikov PA, Kharitonov SL, Lewis TR, Arshavsky VY, Baklaushev VP, Mishin AS, Lukyanov KA. Highly photostable fluorescent labeling of proteins in live cells using exchangeable coiled coils heterodimerization. Cellular and Molecular Life Sciences : Cmls. PMID 31894363 DOI: 10.1007/s00018-019-03426-5   
2020 Ohata J, Krishnamoorthy L, Gonzalez MA, Xiao T, Iovan DA, Toste FD, Miller EW, Chang CJ. An Activity-Based Methionine Bioconjugation Approach To Developing Proximity-Activated Imaging Reporters. Acs Central Science. 6: 32-40. PMID 31989024 DOI: 10.1021/acscentsci.9b01038   
2020 Zhou L, Li J, Zhang K, Shi L, Qin S, Li H. Electrochemical Cross-Linking and Cleavage Enables Molecular Gaping and Bridging on a Biosensing Surface. Analytical Chemistry. PMID 31927916 DOI: 10.1021/acs.analchem.9b04538   
2020 Kang C, Keller TH. Probing Biological Mechanisms with Chemical Tools. Pharmacological Research. 104656. PMID 31962154 DOI: 10.1016/j.phrs.2020.104656   
2020 O'Day DH, Taylor RJ, Myre MA. Calmodulin and Calmodulin Binding Proteins in : A Primer. International Journal of Molecular Sciences. 21. PMID 32054133 DOI: 10.3390/ijms21041210   
2020 Zheng XT, Choi Y, Phua DGG, Tan YN. Noncovalent Fluorescent Biodot-Protein Conjugates with Well-Preserved Native Functions for Improved Sweat Glucose Detection. Bioconjugate Chemistry. PMID 31995367 DOI: 10.1021/acs.bioconjchem.9b00856   
2020 Dwivedi-Agnihotri H, Srivastava A, Shukla AK. Reversible biotinylation of purified proteins for measuring protein-protein interactions. Methods in Enzymology. 633: 281-294. PMID 32046851 DOI: 10.1016/bs.mie.2019.11.008   
2020 Mideksa Y, Fottner M, Braus S, Weiß C, Nguyen TA, Meier S, Lang K, Feige MJ. Site-specific protein labeling with fluorophores as a tool to monitor protein turnover. Chembiochem : a European Journal of Chemical Biology. PMID 32011787 DOI: 10.1002/cbic.201900651   
2020 Hwang HY, Kim TY, Szász MA, Dome B, Malm J, Marko-Varga G, Kwon HJ. Profiling the Protein Targets of Unmodified Bio-Active Molecules with Drug Affinity Responsive Target Stability and Liquid Chromatography/Tandem Mass Spectrometry. Proteomics. e1900325. PMID 31926115 DOI: 10.1002/pmic.201900325   
2020 Martin ER, Barbieri A, Ford RC, Robinson RC. crystals reveal critical features of the interaction between CFTR and the PDZ2 domain of Na/H exchange cofactor NHERF1. The Journal of Biological Chemistry. PMID 32014995 DOI: 10.1074/jbc.RA119.012015   
2020 Jena R, Garg DK, Achary MMV, Singh J, Tomar R, Choudhury L, Bansal R, Kundu B. Application of a protein domain as chaperone for enhancing biological activity and stability of other proteins. Journal of Biotechnology. PMID 32014561 DOI: 10.1016/j.jbiotec.2020.01.017   
2020 Cho KF, Ma TP, Rose CM, Kirkpatrick DS, Yu K, Blake RA. Chaperone mediated detection of small molecule target binding in cells. Nature Communications. 11: 465. PMID 31974362 DOI: 10.1038/s41467-019-14033-0   
2020 Gopi S, Devanshu D, Rajasekaran N, Anantakrishnan S, Naganathan AN. pPerturb: A Server for Predicting Long-Distance Energetic Couplings and Mutation-Induced Stability Changes in Proteins via Perturbations. Acs Omega. 5: 1142-1146. PMID 31984271 DOI: 10.1021/acsomega.9b03371   
2020 Zhu X, Tang R, Wang S, Chen X, Hu J, Lei C, Huang Y, Wang HH, Nie Z, Yao S. A Protein@Inorganic Nano-Dumpling System for High-Loading Protein Delivery with Activatable Fluorescence and Magnetic Resonance Bimodal Imaging Capabilities. Acs Nano. PMID 31990525 DOI: 10.1021/acsnano.9b09024   
2020 Sandoval DR, Gomez Toledo A, Painter CD, Tota EM, Sheikh MO, West AMV, Frank MM, Wells L, Xu D, Bicknell R, Corbett KD, Esko JD. Proteomics-based screening of the endothelial heparan sulfate interactome reveals that C-type lectin 14a (CLEC14A) is a heparin binding protein. The Journal of Biological Chemistry. PMID 31964714 DOI: 10.1074/jbc.RA119.011639   
2020 Scheidler CM, Vrabel M, Schneider S. Genetic code expansion, protein expression and protein functionalisation in Bacillus subtilis. Acs Synthetic Biology. PMID 32053368 DOI: 10.1021/acssynbio.9b00458   
2020 Hyeon SH, Lim WK, Shin HJ. Novel surface plasmon resonance biosensor that uses full-length Det7 phage tail protein for rapid and selective detection of Salmonella enterica serovar Typhimurium. Biotechnology and Applied Biochemistry. PMID 31916280 DOI: 10.1002/bab.1883   
2020 Edgell CL, Smith AJ, Beesley JL, Savery NJ, Woolfson DN. De novo designed protein-interaction modules for in-cell applications. Acs Synthetic Biology. PMID 31977192 DOI: 10.1021/acssynbio.9b00453   
2020 Sung G, Lee SY, Kang MG, Kim KL, An J, Sim J, Kim S, Kim S, Ko J, Rhee HW, Park KM, Kim K. Supra-blot: an accurate and reliable assay for detecting target proteins with a synthetic host molecule-enzyme hybrid. Chemical Communications (Cambridge, England). PMID 31930244 DOI: 10.1039/c9cc09699j   
2020 Dalton K, Lopez T, Pande V, Frydman J. REP-X: An Evolution-guided Strategy for the Rational Design of Cysteine-less Protein Variants. Scientific Reports. 10: 2193. PMID 32042106 DOI: 10.1038/s41598-020-58794-x   
2020 Chatterjee KS, Hembram DSS, Das R. Amide temperature coefficients in characterizing the allosteric effects of ligand binding on local stability in proteins. Biochemical and Biophysical Research Communications. PMID 32033752 DOI: 10.1016/j.bbrc.2020.01.144   
2020 Kwon E, Heo WD. Optogenetic tools for dissecting complex intracellular signaling pathways. Biochemical and Biophysical Research Communications. PMID 31948753 DOI: 10.1016/j.bbrc.2019.12.132   
2020 Heyne M, Papo N, Shifman JM. Generating quantitative binding landscapes through fractional binding selections combined with deep sequencing and data normalization. Nature Communications. 11: 297. PMID 31941882 DOI: 10.1038/s41467-019-13895-8   
2020 Bickers SC, Sayewich JS, Kanelis V. Intrinsically disordered regions regulate the activities of ATP binding cassette transporters. Biochimica Et Biophysica Acta. Biomembranes. 183202. PMID 31972165 DOI: 10.1016/j.bbamem.2020.183202   
2020 Wang T, Yang N, Liang C, Xu H, An Y, Xiao S, Zheng M, Liu L, Wang G, Nie L. Detecting protein-protein interaction based on protein fragment complementation assay. Current Protein & Peptide Science. PMID 32053071 DOI: 10.2174/1389203721666200213102829   
2020 Petersen I, Schlüter R, Hoff KJ, Liebscher V, Bange G, Riedel K, Pané-Farré J. Non-invasive and label-free 3D-visualization shows in vivo oligomerization of the staphylococcal alkaline shock protein 23 (Asp23). Scientific Reports. 10: 125. PMID 31924851 DOI: 10.1038/s41598-019-56907-9   
2020 Schweke H, Mucchielli MH, Sacquin-Mora S, Bei W, Lopes A. Protein interaction energy landscapes are shaped by functional and also non-functional partners. Journal of Molecular Biology. PMID 31931010 DOI: 10.1016/j.jmb.2019.12.047   
2020 Hu T, Wu L, Sun X, Su P, Yang Y. Comparative study on quantitation of human myoglobin by both isotope dilution mass spectrometry and surface plasmon resonance based on calibration-free analysis. Analytical and Bioanalytical Chemistry. PMID 32076791 DOI: 10.1007/s00216-020-02504-z   
2020 Liu G, Fu T, Han Y, Hu S, Zhang X, Zheng M, Hao P, Pan L, Kang J. Probing Protein-Protein Interactions with Label-Free Mass Spectrometry Quantification in Combination with Affinity Purification by Spin-Tip Affinity Column. Analytical Chemistry. PMID 31992042 DOI: 10.1021/acs.analchem.9b05355   
2020 Xie J, Lai L. Protein topology and allostery. Current Opinion in Structural Biology. 62: 158-165. PMID 32066080 DOI: 10.1016/j.sbi.2020.01.011   
2020 Lu J, Wang H, Tian Z, Hou Y, Lu H. Cryopolymerization of 1,2-Dithiolanes for the Facile and Reversible Grafting-from Synthesis of Protein-Polydisulfide Conjugates. Journal of the American Chemical Society. PMID 31927989 DOI: 10.1021/jacs.9b12937   
2020 Tang QY, Kaneko K. Long-range correlation in protein dynamics: Confirmation by structural data and normal mode analysis. Plos Computational Biology. 16: e1007670. PMID 32053592 DOI: 10.1371/journal.pcbi.1007670   
2020 Parray ZA, Ahmad F, Alajmi MF, Hussain A, Hassan MI, Islam A. Formation of molten globule state in horse heart cytochrome c under physiological conditions: Importance of soft interactions and spectroscopic approach in crowded milieu. International Journal of Biological Macromolecules. PMID 31945437 DOI: 10.1016/j.ijbiomac.2020.01.119   
2020 Ems-McClung SC, Walczak CE. In Vitro FRET- and Fluorescence-Based Assays to Study Protein Conformation and Protein-Protein Interactions in Mitosis. Methods in Molecular Biology (Clifton, N.J.). 2101: 93-122. PMID 31879900 DOI: 10.1007/978-1-0716-0219-5_7   
2020 Kalayan J, Henchman RH, Warwicker J. Model for Counterion Binding and Charge Reversal on Protein Surfaces. Molecular Pharmaceutics. PMID 31887056 DOI: 10.1021/acs.molpharmaceut.9b01047   
2020 Li J, Zhang Y, Soubias O, Khago D, Chao FA, Li Y, Shaw K, Byrd RA. Optimization of sortase A ligation for flexible engineering of complex protein systems. The Journal of Biological Chemistry. PMID 31974162 DOI: 10.1074/jbc.RA119.012039   
2020 Deng W, Bates JA, Wei H, Bartoschek MD, Conradt B, Leonhardt H. Tunable light and drug induced depletion of target proteins. Nature Communications. 11: 304. PMID 31949141 DOI: 10.1038/s41467-019-14160-8   
2020 Bhardwaj VK, Purohit R. A new insight into protein-protein interactions and the effect of conformational alterations in PCNA. International Journal of Biological Macromolecules. 148: 999-1009. PMID 31981667 DOI: 10.1016/j.ijbiomac.2020.01.212   
2020 Cunningham JM, Koytiger G, Sorger PK, AlQuraishi M. Biophysical prediction of protein-peptide interactions and signaling networks using machine learning. Nature Methods. PMID 31907444 DOI: 10.1038/s41592-019-0687-1   
2020 Ng WM, Stelfox AJ, Bowden TA. Unraveling virus relationships by structure-based phylogenetic classification. Virus Evolution. 6: veaa003. PMID 32064119 DOI: 10.1093/ve/veaa003   
2020 Marter P, Schmidt S, Kiontke S, Moog D. Optimized mRuby3 is a Suitable Fluorescent Protein for in vivo Co-localization Studies with GFP in the Diatom Phaeodactylum tricornutum. Protist. 171: 125715. PMID 32062589 DOI: 10.1016/j.protis.2020.125715   
2020 Fürsch J, Kammer KM, Kreft SG, Beck M, Stengel F. Proteome-Wide Structural Probing of Low-Abundant Protein Interactions by Cross-Linking Mass Spectrometry. Analytical Chemistry. PMID 32011863 DOI: 10.1021/acs.analchem.9b05559   
2020 Scott LH, Mathews JC, Filipovska A, Rackham O. Building artificial genetic circuits to understand protein function. Methods in Enzymology. 633: 231-250. PMID 32046848 DOI: 10.1016/bs.mie.2019.11.003   
2020 Segal I, Nachmias D, Konig A, Alon A, Arbely E, Elia N. A straightforward approach for bioorthogonal labeling of proteins and organelles in live mammalian cells, using a short peptide tag. Bmc Biology. 18: 5. PMID 31937312 DOI: 10.1186/s12915-019-0708-7   
2020 Hosseinpour S, Roeters SJ, Bonn M, Peukert W, Woutersen S, Weidner T. Structure and Dynamics of Interfacial Peptides and Proteins from Vibrational Sum-Frequency Generation Spectroscopy. Chemical Reviews. PMID 31939659 DOI: 10.1021/acs.chemrev.9b00410   
2020 Thak EJ, Yoo SJ, Moon HY, Kang HA. Yeast synthetic biology for designed cell factories producing secretory recombinant proteins. Fems Yeast Research. PMID 32009173 DOI: 10.1093/femsyr/foaa009   
2020 Liu Y, Hu S, Zhang G, Wu Q, Zhang G, Liu X. Pattern-based recognition of proteins by an array of fluorescent carbon-nanodot receptors. Talanta. 209: 120551. PMID 31892024 DOI: 10.1016/j.talanta.2019.120551   
2020 Schuster J, Koulov A, Mahler HC, Detampel P, Huwyler J, Singh S, Mathaes R. In Vivo Stability of Therapeutic Proteins. Pharmaceutical Research. 37: 23. PMID 31900680 DOI: 10.1007/s11095-019-2689-1   
2020 Verma R, Mohl D, Deshaies RJ. Harnessing the Power of Proteolysis for Targeted Protein Inactivation. Molecular Cell. PMID 32004468 DOI: 10.1016/j.molcel.2020.01.010   
2020 Welte H, Zhou T, Mihajlenko X, Mayans O, Kovermann M. What does fluorine do to a protein? Thermodynamic, and highly-resolved structural insights into fluorine-labelled variants of the cold shock protein. Scientific Reports. 10: 2640. PMID 32060391 DOI: 10.1038/s41598-020-59446-w