| Year |
Citation |
Score |
| 2012 |
Rader AJ, Yennamalli RM, Harter AK, Sen TZ. A rigid network of long-range contacts increases thermostability in a mutant endoglucanase. Journal of Biomolecular Structure & Dynamics. 30: 628-37. PMID 22731517 DOI: 10.1080/07391102.2012.689696 |
0.477 |
|
| 2011 |
Yennamalli RM, Rader AJ, Wolt JD, Sen TZ. Thermostability in endoglucanases is fold-specific. Bmc Structural Biology. 11: 10. PMID 21291533 DOI: 10.1186/1472-6807-11-10 |
0.396 |
|
| 2011 |
Rader AJ, Brown SM. Correlating allostery with rigidity. Molecular Biosystems. 7: 464-71. PMID 21060909 DOI: 10.1039/C0Mb00054J |
0.434 |
|
| 2011 |
Yennamalli RM, Wolt JD, Rader AJ, Sen TZ. Sequence, Structure and Dynamics Analysis of Thermostability in Endoglucanases Biophysical Journal. 100: 536a. DOI: 10.1016/J.Bpj.2010.12.3126 |
0.408 |
|
| 2011 |
Harter A, Rader AJ. Differences in Structural Rigidity between Thermophilic Proteins and their Mesophilic Homologues Biophysical Journal. 100: 398a. DOI: 10.1016/J.Bpj.2010.12.2364 |
0.463 |
|
| 2011 |
Rader AJ, Brown SM. Rigidity Analysis Identifies Common Features of Allostery Biophysical Journal. 100: 377a. DOI: 10.1016/J.Bpj.2010.12.2247 |
0.442 |
|
| 2010 |
Rader AJ. Free Energy Profiles of Large Scale Protein Conformational Changes Biophysical Journal. 98: 236a. DOI: 10.1016/J.Bpj.2009.12.1279 |
0.402 |
|
| 2009 |
Rader AJ. Thermostability in rubredoxin and its relationship to mechanical rigidity Physical Biology. 7: 16002. PMID 20009190 DOI: 10.1088/1478-3975/7/1/016002 |
0.413 |
|
| 2009 |
Rader AJ. Thermostabilization Due to Rigidity: A Case Study of Rubredoxin Biophysical Journal. 96: 330a. DOI: 10.1016/J.Bpj.2008.12.1664 |
0.428 |
|
| 2008 |
Rader AJ, Harrell JT. Comparisons of protein family dynamics Pacific Symposium On Biocomputing 2008, Psb 2008. 426-437. PMID 18229705 |
0.331 |
|
| 2007 |
Tastan O, Yu E, Ganapathiraju M, Aref A, Rader AJ, Klein-Seetharaman J. Comparison of stability predictions and simulated unfolding of rhodopsin structures. Photochemistry and Photobiology. 83: 351-62. PMID 17576347 DOI: 10.1562/2006-06-20-Ra-942 |
0.5 |
|
| 2006 |
Isin B, Rader AJ, Dhiman HK, Klein-Seetharaman J, Bahar I. Predisposition of the dark state of rhodopsin to functional changes in structure. Proteins. 65: 970-83. PMID 17009319 DOI: 10.1002/Prot.21158 |
0.389 |
|
| 2006 |
Yang LW, Rader AJ, Liu X, Jursa CJ, Chen SC, Karimi HA, Bahar I. oGNM: online computation of structural dynamics using the Gaussian Network Model. Nucleic Acids Research. 34: W24-31. PMID 16845002 DOI: 10.1093/Nar/Gkl084 |
0.429 |
|
| 2005 |
Chennubhotla C, Rader AJ, Yang LW, Bahar I. Elastic network models for understanding biomolecular machinery: from enzymes to supramolecular assemblies. Physical Biology. 2: S173-80. PMID 16280623 DOI: 10.1088/1478-3975/2/4/S12 |
0.462 |
|
| 2005 |
Bahar I, Rader AJ. Coarse-grained normal mode analysis in structural biology. Current Opinion in Structural Biology. 15: 586-92. PMID 16143512 DOI: 10.1016/J.Sbi.2005.08.007 |
0.432 |
|
| 2005 |
Yang LW, Liu X, Jursa CJ, Holliman M, Rader AJ, Karimi HA, Bahar I. iGNM: a database of protein functional motions based on Gaussian Network Model. Bioinformatics (Oxford, England). 21: 2978-87. PMID 15860562 DOI: 10.1093/Bioinformatics/Bti469 |
0.475 |
|
| 2005 |
Rader AJ, Vlad DH, Bahar I. Maturation dynamics of bacteriophage HK97 capsid. Structure (London, England : 1993). 13: 413-21. PMID 15766543 DOI: 10.1016/J.Str.2004.12.015 |
0.337 |
|
| 2005 |
Thorpe MF, Chubynsky M, Hespenheide B, Menor S, Jacobs DJ, Kuhn LA, Zavodszky MI, Lei M, Rader AJ, Whiteley W. Flexibility in biomolecules Current Topics in Physics: in Honor of Sir Roger J. Elliott. 97-112. DOI: 10.1142/9781860947209_0006 |
0.71 |
|
| 2004 |
Rader AJ, Anderson G, Isin B, Khorana HG, Bahar I, Klein-Seetharaman J. Identification of core amino acids stabilizing rhodopsin. Proceedings of the National Academy of Sciences of the United States of America. 101: 7246-51. PMID 15123809 DOI: 10.1073/Pnas.0401429101 |
0.449 |
|
| 2004 |
Rader AJ, Bahar I. Folding core predictions from network models of proteins Polymer. 45: 659-668. DOI: 10.1016/J.Polymer.2003.10.080 |
0.498 |
|
| 2002 |
Hespenheide BM, Rader AJ, Thorpe MF, Kuhn LA. Identifying protein folding cores from the evolution of flexible regions during unfolding. Journal of Molecular Graphics & Modelling. 21: 195-207. PMID 12463638 DOI: 10.1016/S1093-3263(02)00146-8 |
0.728 |
|
| 2002 |
Rader AJ, Hespenheide BM, Kuhn LA, Thorpe MF. Protein unfolding: rigidity lost. Proceedings of the National Academy of Sciences of the United States of America. 99: 3540-5. PMID 11891336 DOI: 10.1073/Pnas.062492699 |
0.741 |
|
| 2001 |
Jacobs DJ, Rader AJ, Kuhn LA, Thorpe MF. Protein flexibility predictions using graph theory. Proteins. 44: 150-65. PMID 11391777 DOI: 10.1002/Prot.1081 |
0.697 |
|
| 2001 |
Thorpe MF, Lei M, Rader AJ, Jacobs DJ, Kuhn LA. Protein flexibility and dynamics using constraint theory. Journal of Molecular Graphics & Modelling. 19: 60-9. PMID 11381531 DOI: 10.1016/S1093-3263(00)00122-4 |
0.648 |
|
| 2000 |
Thorpe M, Rader A, Lei M, Kuhn LA, Jacobs D. Predicting flexibility in proteins using constraint theory Journal of Molecular Graphics and Modelling. 18: 556. DOI: 10.1016/S1093-3263(00)80134-5 |
0.632 |
|
| 2000 |
Rader A, Kuhn LA, Hespenheide B, Thorpe M. The transition between rigidity and flexibility in proteins and glasses Journal of Molecular Graphics and Modelling. 18: 554-555. DOI: 10.1016/S1093-3263(00)80128-X |
0.708 |
|
| 2000 |
Kuhn LA, Hespenheide B, Rader AJ, Thorpe M. A graph theory approach to predicting unfolding pathways of proteins Journal of Molecular Graphics and Modelling. 18: 553. DOI: 10.1016/S1093-3263(00)80123-0 |
0.696 |
|
| 2000 |
Krishnamurthy H, Rader AJ, Thorpe MF, Kuhn LA, Gregory Zeikus J, Vieille C. Testing FIRST predictions on protein stability using adenylate kinase as a model enzyme Journal of Molecular Graphics and Modelling. 18: 551. DOI: 10.1016/S1093-3263(00)80115-1 |
0.596 |
|
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