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Artem B. Mamonov, Ph.D. - Publications

Affiliations: 
2006 University of Pittsburgh, Pittsburgh, PA, United States 
Area:
General Biophysics
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14 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2012 Mamonov AB, Lettieri S, Ding Y, Sarver JL, Palli R, Cunningham TF, Saxena S, Zuckerman DM. Tunable, mixed-resolution modeling using library-based Monte Carlo and graphics processing units. Journal of Chemical Theory and Computation. 8: 2921-2929. PMID 23162384 DOI: 10.1021/Ct300263Z  0.331
2011 Lettieri S, Mamonov AB, Zuckerman DM. Extending fragment-based free energy calculations with library Monte Carlo simulation: annealing in interaction space. Journal of Computational Chemistry. 32: 1135-43. PMID 21387340 DOI: 10.1002/Jcc.21695  0.352
2011 Cashman DJ, Mamonov AB, Bhatt D, Zuckerman DM. Thermal motions of the E. coli glucose-galactose binding protein studied using well-sampled semi-atomistic simulations Current Topics in Medicinal Chemistry. 11: 211-220. PMID 20939787 DOI: 10.1016/J.Bpj.2008.12.3752  0.357
2011 Mamonov AB, Zhang X, Zuckerman DM. Rapid sampling of all-atom peptides using a library-based polymer-growth approach. Journal of Computational Chemistry. 32: 396-405. PMID 20734315 DOI: 10.1002/Jcc.21626  0.323
2011 Ding Y, Mamonov AB, Zuckerman DM. Improved Library-Based Monte Carlo, Applied to Multi-Level Sampling Biophysical Journal. 100: 155a. DOI: 10.1016/J.Bpj.2010.12.1057  0.376
2010 Ding Y, Mamonov AB, Zuckerman DM. Efficient equilibrium sampling of all-atom peptides using library-based Monte Carlo. The Journal of Physical Chemistry. B. 114: 5870-7. PMID 20380366 DOI: 10.1021/Jp910112D  0.364
2010 Mamonov AB, Zuckerman DM. Library-Based Monte Carlo as a Convenient Platform for Variable-Resolution Protein Models Biophysical Journal. 98: 571a. DOI: 10.1016/J.Bpj.2009.12.3101  0.336
2009 Mamonov AB, Bhatt D, Cashman DJ, Ding Y, Zuckerman DM. General library-based Monte Carlo technique enables equilibrium sampling of semi-atomistic protein models. The Journal of Physical Chemistry. B. 113: 10891-904. PMID 19594147 DOI: 10.1021/Jp901322V  0.38
2009 Zhang X, Mamonov AB, Zuckerman DM. Absolute free energies estimated by combining precalculated molecular fragment libraries. Journal of Computational Chemistry. 30: 1680-91. PMID 19504588 DOI: 10.1002/Jcc.21337  0.325
2009 Mamonov AB, Zuckerman DM. Improving The Computational Efficiency Of Non-Dynamical Approaches For Equilibrium Sampling Of All-Atom Protein Models Biophysical Journal. 96: 407a. DOI: 10.1016/J.Bpj.2008.12.2075  0.358
2007 Mamonov AB, Coalson RD, Zeidel ML, Mathai JC. Water and deuterium oxide permeability through aquaporin 1: MD predictions and experimental verification. The Journal of General Physiology. 130: 111-6. PMID 17591989 DOI: 10.1085/Jgp.200709810  0.532
2007 Cheng MH, Mamonov AB, Dukes JW, Coalson RD. Modeling the fast gating mechanism in the ClC-0 chloride channel. The Journal of Physical Chemistry. B. 111: 5956-65. PMID 17487993 DOI: 10.1021/Jp063993H  0.62
2006 Mamonov AB, Kurnikova MG, Coalson RD. Diffusion constant of K+ inside Gramicidin A: a comparative study of four computational methods. Biophysical Chemistry. 124: 268-78. PMID 16797116 DOI: 10.1016/J.Bpc.2006.03.019  0.577
2003 Mamonov AB, Coalson RD, Nitzan A, Kurnikova MG. The role of the dielectric barrier in narrow biological channels: a novel composite approach to modeling single-channel currents. Biophysical Journal. 84: 3646-61. PMID 12770873 DOI: 10.1016/S0006-3495(03)75095-4  0.587
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