Kyle Miller - Publications

2007 University of Texas at Austin, Austin, Texas, U.S.A. 

58 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Lee SY, Miller KM, Kim JJ. Clinical and Mechanistic Implications of R-Loops in Human Leukemias. International Journal of Molecular Sciences. 24. PMID 36983041 DOI: 10.3390/ijms24065966  0.325
2022 Kaminski N, Wondisford AR, Kwon Y, Lynskey ML, Bhargava R, Barroso-González J, García-Expósito L, He B, Xu M, Mellacheruvu D, Watkins SC, Modesti M, Miller KM, Nesvizhskii AI, Zhang H, et al. RAD51AP1 regulates ALT-HDR through chromatin-directed homeostasis of TERRA. Molecular Cell. PMID 36265488 DOI: 10.1016/j.molcel.2022.09.025  0.326
2022 Lee SY, Kim JJ, Miller KM. Single-Cell Analysis of Histone Acetylation Dynamics at Replication Forks Using PLA and SIRF. Methods in Molecular Biology (Clifton, N.J.). 2589: 345-360. PMID 36255636 DOI: 10.1007/978-1-0716-2788-4_23  0.475
2022 Sanchez A, Buck-Koehntop BA, Miller KM. Joining the PARty: PARP Regulation of KDM5A during DNA Repair (and Transcription?). Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e2200015. PMID 35532219 DOI: 10.1002/bies.202200015  0.481
2022 Oberdoerffer P, Miller KM. Histone H2A variants: Diversifying chromatin to ensure genome integrity. Seminars in Cell & Developmental Biology. PMID 35331626 DOI: 10.1016/j.semcdb.2022.03.011  0.367
2022 Lee D, Apelt K, Lee SO, Chan HR, Luijsterburg MS, Leung JWC, Miller KM. ZMYM2 restricts 53BP1 at DNA double-strand breaks to favor BRCA1 loading and homologous recombination. Nucleic Acids Research. PMID 35253893 DOI: 10.1093/nar/gkac160  0.454
2021 Sanchez A, Lee D, Kim DI, Miller KM. Making Connections: Integrative Signaling Mechanisms Coordinate DNA Break Repair in Chromatin. Frontiers in Genetics. 12: 747734. PMID 34659365 DOI: 10.3389/fgene.2021.747734  0.485
2021 Lee SY, Kim JJ, Miller KM. Bromodomain proteins: protectors against endogenous DNA damage and facilitators of genome integrity. Experimental & Molecular Medicine. PMID 34548613 DOI: 10.1038/s12276-021-00673-0  0.483
2021 Kumbhar R, Sanchez A, Perren J, Gong F, Corujo D, Medina F, Devanathan SK, Xhemalce B, Matouschek A, Buschbeck M, Buck-Koehntop BA, Miller KM. Poly(ADP-ribose) binding and macroH2A mediate recruitment and functions of KDM5A at DNA lesions. The Journal of Cell Biology. 220. PMID 34003252 DOI: 10.1083/jcb.202006149  0.466
2021 Ren W, Fan H, Grimm SA, Kim JJ, Li L, Guo Y, Petell CJ, Tan XF, Zhang ZM, Coan JP, Yin J, Kim DI, Gao L, Cai L, Khudaverdyan N, ... ... Miller KM, et al. DNMT1 reads heterochromatic H4K20me3 to reinforce LINE-1 DNA methylation. Nature Communications. 12: 2490. PMID 33941775 DOI: 10.1038/s41467-021-22665-4  0.377
2020 Lee SY, Kim JJ, Miller KM. Emerging roles of RNA modifications in genome integrity. Briefings in Functional Genomics. PMID 33279952 DOI: 10.1093/bfgp/elaa022  0.394
2020 Kim JJ, Lee SY, Choi JH, Woo HG, Xhemalce B, Miller KM. PCAF-Mediated Histone Acetylation Promotes Replication Fork Degradation by MRE11 and EXO1 in BRCA-Deficient Cells. Molecular Cell. PMID 32966758 DOI: 10.1016/j.molcel.2020.08.018  0.304
2020 Sriraman A, Debnath TK, Xhemalce B, Miller KM. Making it or breaking it: DNA methylation and genome integrity. Essays in Biochemistry. PMID 32808652 DOI: 10.1042/EBC20200009  0.426
2020 Ren W, Fan H, Grimm SA, Guo Y, Kim JJ, Yin J, Li L, Petell CJ, Tan XF, Zhang ZM, Coan JP, Gao L, Cai L, Detrick B, Çetin B, ... ... Miller KM, et al. Direct readout of heterochromatic H3K9me3 regulates DNMT1-mediated maintenance DNA methylation. Proceedings of the National Academy of Sciences of the United States of America. PMID 32675241 DOI: 10.1073/Pnas.2009316117  0.393
2019 Kim JJ, Lee SY, Gong F, Battenhouse AM, Boutz DR, Bashyal A, Refvik ST, Chiang CM, Xhemalce B, Paull TT, Brodbelt JS, Marcotte EM, Miller KM. Systematic bromodomain protein screens identify homologous recombination and R-loop suppression pathways involved in genome integrity. Genes & Development. PMID 31753913 DOI: 10.1101/Gad.331231.119  0.423
2019 Gong F, Miller KM. Histone methylation and the DNA damage response. Mutation Research. 780: 37-47. PMID 31395347 DOI: 10.1016/j.mrrev.2017.09.003  0.39
2019 Puget N, Miller KM, Legube G. Non-canonical DNA/RNA structures during Transcription-Coupled Double-Strand Break Repair: Roadblocks or Bona fide repair intermediates? Dna Repair. 102661. PMID 31331819 DOI: 10.1016/j.dnarep.2019.102661  0.441
2019 Kim JJ, Lee SY, Miller KM. Preserving genome integrity and function: the DNA damage response and histone modifications. Critical Reviews in Biochemistry and Molecular Biology. 1-34. PMID 31164001 DOI: 10.1080/10409238.2019.1620676  0.434
2019 Kim JJ, Kumbhar R, Gong F, Miller KM. In Time and Space: Laser Microirradiation and the DNA Damage Response. Methods in Molecular Biology (Clifton, N.J.). 1999: 61-74. PMID 31127569 DOI: 10.1007/978-1-4939-9500-4_3  0.361
2019 Klein HL, Bačinskaja G, Che J, Cheblal A, Elango R, Epshtein A, Fitzgerald DM, Gómez-González B, Khan SR, Kumar S, Leland BA, Marie L, Mei Q, Miné-Hattab J, Piotrowska A, ... ... Miller KM, et al. Guidelines for DNA recombination and repair studies: Cellular assays of DNA repair pathways. Microbial Cell (Graz, Austria). 6: 1-64. PMID 30652105 DOI: 10.15698/Mic2019.01.664  0.311
2019 Xia J, Chiu LY, Nehring RB, Bravo Núñez MA, Mei Q, Perez M, Zhai Y, Fitzgerald DM, Pribis JP, Wang Y, Hu CW, Powell RT, LaBonte SA, Jalali A, Matadamas Guzmán ML, ... ... Miller KM, et al. Bacteria-to-Human Protein Networks Reveal Origins of Endogenous DNA Damage. Cell. 176: 127-143.e24. PMID 30633903 DOI: 10.1016/J.Cell.2018.12.008  0.456
2019 Dilworth D, Gong F, Miller KM, Nelson CJ. FKBP25 participates in DNA double-strand break repair. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. PMID 30620620 DOI: 10.1139/bcb-2018-0328  0.441
2018 Makharashvili N, Arora S, Yin Y, Fu Q, Wen X, Lee JH, Kao CH, Leung JW, Miller KM, Paull TT. Sae2/CtIP prevents R-loop accumulation in eukaryotic cells. Elife. 7. PMID 30523780 DOI: 10.7554/Elife.42733  0.366
2018 Kotlajich MV, Xia J, Zhai Y, Lin HY, Bradley CC, Shen X, Mei Q, Wang AZ, Lynn EJ, Shee C, Chen LT, Li L, Miller KM, Herman C, Hastings PJ, et al. Fluorescent fusions of the N protein of phage Mu label DNA damage in living cells. Dna Repair. PMID 30268364 DOI: 10.1016/J.Dnarep.2018.09.005  0.366
2018 Leung JWC, Emery LE, Miller KM. CRISPR/Cas9 Gene Editing of Human Histone H2A Variant H2AX and MacroH2A. Methods in Molecular Biology (Clifton, N.J.). 1832: 255-269. PMID 30073532 DOI: 10.1007/978-1-4939-8663-7_14  0.391
2018 Gong F, Miller KM. Double duty: ZMYND8 in the DNA damage response and cancer. Cell Cycle (Georgetown, Tex.). 1-21. PMID 29393731 DOI: 10.1080/15384101.2017.1376150  0.471
2018 Vilas CK, Emery LE, Denchi EL, Miller KM. Caught with One's Zinc Fingers in the Genome Integrity Cookie Jar. Trends in Genetics : Tig. PMID 29370947 DOI: 10.1016/j.tig.2017.12.011  0.348
2017 Chiu LY, Gong F, Miller KM. Bromodomain proteins: repairing DNA damage within chromatin. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 372. PMID 28847823 DOI: 10.1098/rstb.2016.0286  0.436
2017 Gong F, Clouaire T, Aguirrebengoa M, Legube G, Miller KM. Histone demethylase KDM5A regulates the ZMYND8-NuRD chromatin remodeler to promote DNA repair. The Journal of Cell Biology. PMID 28572115 DOI: 10.1083/jcb.201611135  0.474
2017 Zacharioudakis E, Agarwal P, Bartoli A, Abell N, Kunalingam L, Bergoglio V, Xhemalce B, Miller KM, Rodriguez R. Chromatin Regulates Genome Targeting with Cisplatin. Angewandte Chemie (International Ed. in English). PMID 28474855 DOI: 10.1002/anie.201701144  0.441
2017 Leung JW, Makharashvili N, Agarwal P, Chiu LY, Pourpre R, Cammarata MB, Cannon JR, Sherker A, Durocher D, Brodbelt JS, Paull TT, Miller KM. ZMYM3 regulates BRCA1 localization at damaged chromatin to promote DNA repair. Genes & Development. PMID 28242625 DOI: 10.1101/Gad.292516.116  0.692
2016 Gong F, Chiu LY, Miller KM. Acetylation Reader Proteins: Linking Acetylation Signaling to Genome Maintenance and Cancer. Plos Genetics. 12: e1006272. PMID 27631103 DOI: 10.1371/journal.pgen.1006272  0.361
2016 Agarwal P, Miller KM. The nucleosome: orchestrating DNA damage signaling and repair within chromatin. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 1-15. PMID 27240007 DOI: 10.1139/bcb-2016-0017  0.472
2016 Myler LR, Gallardo IF, Zhou Y, Gong F, Yang SH, Wold MS, Miller KM, Paull TT, Finkelstein IJ. Single-molecule imaging reveals the mechanism of Exo1 regulation by single-stranded DNA binding proteins. Proceedings of the National Academy of Sciences of the United States of America. PMID 26884156 DOI: 10.1073/Pnas.1516674113  0.443
2015 Mateos-Gomez PA, Gong F, Nair N, Miller KM, Lazzerini-Denchi E, Sfeir A. Mammalian polymerase θ promotes alternative NHEJ and suppresses recombination. Nature. 518: 254-7. PMID 25642960 DOI: 10.1038/nature14157  0.403
2015 Gong F, Chiu LY, Cox B, Aymard F, Clouaire T, Leung JW, Cammarata M, Perez M, Agarwal P, Brodbelt JS, Legube G, Miller KM. Screen identifies bromodomain protein ZMYND8 in chromatin recognition of transcription-associated DNA damage that promotes homologous recombination. Genes & Development. 29: 197-211. PMID 25593309 DOI: 10.1101/Gad.252189.114  0.485
2014 Aymard F, Bugler B, Schmidt CK, Guillou E, Caron P, Briois S, Iacovoni JS, Daburon V, Miller KM, Jackson SP, Legube G. Transcriptionally active chromatin recruits homologous recombination at DNA double-strand breaks. Nature Structural & Molecular Biology. 21: 366-74. PMID 24658350 DOI: 10.1038/nsmb.2796  0.633
2014 Leung JW, Agarwal P, Canny MD, Gong F, Robison AD, Finkelstein IJ, Durocher D, Miller KM. Nucleosome acidic patch promotes RNF168- and RING1B/BMI1-dependent H2AX and H2A ubiquitination and DNA damage signaling. Plos Genetics. 10: e1004178. PMID 24603765 DOI: 10.1371/Journal.Pgen.1004178  0.631
2013 Shee C, Cox BD, Gu F, Luengas EM, Joshi MC, Chiu LY, Magnan D, Halliday JA, Frisch RL, Gibson JL, Nehring RB, Do HG, Hernandez M, Li L, Herman C, ... ... Miller KM, et al. Engineered proteins detect spontaneous DNA breakage in human and bacterial cells. Elife. 2: e01222. PMID 24171103 DOI: 10.7554/Elife.01222  0.437
2013 Gong F, Miller KM. Mammalian DNA repair: HATs and HDACs make their mark through histone acetylation. Mutation Research. 750: 23-30. PMID 23927873 DOI: 10.1016/j.mrfmmm.2013.07.002  0.452
2013 Chen WT, Alpert A, Leiter C, Gong F, Jackson SP, Miller KM. Systematic identification of functional residues in mammalian histone H2AX. Molecular and Cellular Biology. 33: 111-26. PMID 23109425 DOI: 10.1128/MCB.01024-12  0.615
2012 Miller KM, Jackson SP. Histone marks: repairing DNA breaks within the context of chromatin. Biochemical Society Transactions. 40: 370-6. PMID 22435814 DOI: 10.1042/BST20110747  0.634
2012 Rodriguez R, Miller KM, Forment JV, Bradshaw CR, Nikan M, Britton S, Oelschlaegel T, Xhemalce B, Balasubramanian S, Jackson SP. Small-molecule-induced DNA damage identifies alternative DNA structures in human genes. Nature Chemical Biology. 8: 301-10. PMID 22306580 DOI: 10.1038/Nchembio.780  0.594
2010 Jain D, Hebden AK, Nakamura TM, Miller KM, Cooper JP. HAATI survivors replace canonical telomeres with blocks of generic heterochromatin. Nature. 467: 223-7. PMID 20829796 DOI: 10.1038/Nature09374  0.67
2010 Miller KM, Tjeertes JV, Coates J, Legube G, Polo SE, Britton S, Jackson SP. Human HDAC1 and HDAC2 function in the DNA-damage response to promote DNA nonhomologous end-joining. Nature Structural & Molecular Biology. 17: 1144-51. PMID 20802485 DOI: 10.1038/nsmb.1899  0.627
2009 Galanty Y, Belotserkovskaya R, Coates J, Polo S, Miller KM, Jackson SP. Mammalian SUMO E3-ligases PIAS1 and PIAS4 promote responses to DNA double-strand breaks. Nature. 462: 935-9. PMID 20016603 DOI: 10.1038/nature08657  0.624
2009 Germe T, Miller K, Cooper JP. A non-canonical function of topoisomerase II in disentangling dysfunctional telomeres. The Embo Journal. 28: 2803-11. PMID 19680223 DOI: 10.1038/Emboj.2009.223  0.696
2009 Tjeertes JV, Miller KM, Jackson SP. Screen for DNA-damage-responsive histone modifications identifies H3K9Ac and H3K56Ac in human cells. The Embo Journal. 28: 1878-89. PMID 19407812 DOI: 10.1038/emboj.2009.119  0.615
2009 Rog O, Miller KM, Ferreira MG, Cooper JP. Sumoylation of RecQ helicase controls the fate of dysfunctional telomeres. Molecular Cell. 33: 559-69. PMID 19285940 DOI: 10.1016/J.Molcel.2009.01.027  0.73
2007 Xhemalce B, Miller KM, Driscoll R, Masumoto H, Jackson SP, Kouzarides T, Verreault A, Arcangioli B. Regulation of histone H3 lysine 56 acetylation in Schizosaccharomyces pombe. The Journal of Biological Chemistry. 282: 15040-7. PMID 17369611 DOI: 10.1074/Jbc.M701197200  0.591
2007 Collins SR, Miller KM, Maas NL, Roguev A, Fillingham J, Chu CS, Schuldiner M, Gebbia M, Recht J, Shales M, Ding H, Xu H, Han J, Ingvarsdottir K, Cheng B, et al. Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map. Nature. 446: 806-10. PMID 17314980 DOI: 10.1038/Nature05649  0.664
2006 Miller KM, Maas NL, Toczyski DP. Taking it off: regulation of H3 K56 acetylation by Hst3 and Hst4. Cell Cycle (Georgetown, Tex.). 5: 2561-5. PMID 17106263  0.708
2006 Maas NL, Miller KM, DeFazio LG, Toczyski DP. Cell cycle and checkpoint regulation of histone H3 K56 acetylation by Hst3 and Hst4. Molecular Cell. 23: 109-19. PMID 16818235 DOI: 10.1016/j.molcel.2006.06.006  0.677
2006 Miller KM, Rog O, Cooper JP. Semi-conservative DNA replication through telomeres requires Taz1. Nature. 440: 824-8. PMID 16598261 DOI: 10.1038/Nature04638  0.68
2005 Miller KM, Ferreira MG, Cooper JP. Taz1, Rap1 and Rif1 act both interdependently and independently to maintain telomeres. The Embo Journal. 24: 3128-35. PMID 16096639 DOI: 10.1038/Sj.Emboj.7600779  0.722
2004 Ferreira MG, Miller KM, Cooper JP. Indecent exposure: when telomeres become uncapped. Molecular Cell. 13: 7-18. PMID 14731390 DOI: 10.1016/S1097-2765(03)00531-8  0.681
2003 Beernink HT, Miller K, Deshpande A, Bucher P, Cooper JP. Telomere maintenance in fission yeast requires an Est1 ortholog. Current Biology : Cb. 13: 575-80. PMID 12676088 DOI: 10.1016/S0960-9822(03)00169-6  0.662
2003 Miller KM, Cooper JP. The telomere protein Taz1 is required to prevent and repair genomic DNA breaks. Molecular Cell. 11: 303-13. PMID 12620220 DOI: 10.1016/S1097-2765(03)00041-8  0.71
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