William E. Holben - Publications

University of Montana, Missoula, MT 
Microbiology Biology, Ecology Biology, Biogeochemistry

72 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2014 Hjelmsø MH, Hansen LH, Baelum J, Feld L, Holben WE, Jacobsen CS. High-resolution melt analysis for rapid comparison of bacterial community compositions. Applied and Environmental Microbiology. 80: 3568-75. PMID 24610853 DOI: 10.1128/AEM.03923-13  0.48
2014 Morales SE, Holben WE. Simulated geologic carbon storage leak reduces bacterial richness and alters bacterial community composition in surface soil Soil Biology and Biochemistry. 76: 286-296. DOI: 10.1016/j.soilbio.2014.05.018  0.48
2013 Morales SE, Holben WE. Functional response of a near-surface soil microbial community to a simulated underground CO2 storage leak. Plos One. 8: e81742. PMID 24303067 DOI: 10.1371/journal.pone.0081742  0.48
2013 Rout ME, Chrzanowski TH, Westlie TK, DeLuca TH, Callaway RM, Holben WE. Bacterial endophytes enhance competition by invasive plants. American Journal of Botany. 100: 1726-37. PMID 23935109 DOI: 10.3732/ajb.1200577  0.48
2012 See W, Edwards WH, Dauwalter S, Almendra C, Kardos MD, Lowell JL, Wallen R, Cain SL, Holben WE, Luikart G. Yersinia enterocolitica: an unlikely cause of positive brucellosis tests in greater yellowstone ecosystem bison (Bison bison). Journal of Wildlife Diseases. 48: 537-41. PMID 22740518 DOI: 10.7589/0090-3558-48.3.537  0.48
2012 Stibal M, Bælum J, Holben WE, Sørensen SR, Jensen A, Jacobsen CS. Microbial degradation of 2,4-dichlorophenoxyacetic acid on the Greenland ice sheet. Applied and Environmental Microbiology. 78: 5070-6. PMID 22582066 DOI: 10.1128/AEM.00400-12  0.48
2011 Pollock JL, Kogan LA, Thorpe AS, Holben WE. (±)-catechin, a root exudate of the invasive centaurea stoebe lam. (Spotted knapweed) exhibits bacteriostatic activity against multiple soil bacterial populations. Journal of Chemical Ecology. 37: 1044-53. PMID 21882071 DOI: 10.1007/s10886-011-0005-6  0.48
2011 Morales SE, Holben WE. Linking bacterial identities and ecosystem processes: can 'omic' analyses be more than the sum of their parts? Fems Microbiology Ecology. 75: 2-16. PMID 20662931 DOI: 10.1111/j.1574-6941.2010.00938.x  0.48
2011 Holben WE. GC Fractionation Allows Comparative Total Microbial Community Analysis, Enhances Diversity Assessment, and Facilitates Detection of Minority Populations of Bacteria Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches. 183-196. DOI: 10.1002/9781118010518.ch23  0.48
2011 Morales SE, Holben WE. Empirical Testing of 16S PCR Primer Pairs Reveals Variance in Target Specificity and Efficacy not Suggested by In Silico Analysis Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches. 135-141. DOI: 10.1002/9781118010518.ch17  0.48
2010 Ball PN, MacKenzie MD, DeLuca TH, Holben WE. Wildfire and charcoal enhance nitrification and ammonium-oxidizing bacterial abundance in dry montane forest soils. Journal of Environmental Quality. 39: 1243-53. PMID 20830912 DOI: 10.2134/jeq2009.0082  0.48
2010 Baelum J, Jacobsen CS, Holben WE. Comparison of 16S rRNA gene phylogeny and functional tfdA gene distribution in thirty-one different 2,4-dichlorophenoxyacetic acid and 4-chloro-2-methylphenoxyacetic acid degraders. Systematic and Applied Microbiology. 33: 67-70. PMID 20206455 DOI: 10.1016/j.syapm.2010.01.001  0.48
2010 Morales SE, Cosart T, Holben WE. Bacterial gene abundances as indicators of greenhouse gas emission in soils. The Isme Journal. 4: 799-808. PMID 20182521 DOI: 10.1038/ismej.2010.8  0.48
2009 Kinnersley MA, Holben WE, Rosenzweig F. E Unibus Plurum: genomic analysis of an experimentally evolved polymorphism in Escherichia coli. Plos Genetics. 5: e1000713. PMID 19893610 DOI: 10.1371/journal.pgen.1000713  0.48
2009 Feris KP, Ramsey PW, Gibbons SM, Frazar C, Rillig MC, Moore JN, Gannon JE, Holben WE. Hyporheic microbial community development is a sensitive indicator of metal contamination. Environmental Science & Technology. 43: 6158-63. PMID 19746707 DOI: 10.1021/es9005465  0.48
2009 Adams SM, Adams AS, Holben WE. Tri-trophic linkages in disease: pathogen transmission to rainbow trout through stonefly prey. Environmental Entomology. 38: 1022-7. PMID 19689880 DOI: 10.1603/022.038.0409  0.48
2009 Gordon NS, Valenzuela A, Adams SM, Ramsey PW, Pollock JL, Holben WE, Gannon JE. Pedobacter nyackensis sp. nov., Pedobacter alluvionis sp. nov. and Pedobacter borealis sp. nov., isolated from Montana flood-plain sediment and forest soil. International Journal of Systematic and Evolutionary Microbiology. 59: 1720-6. PMID 19542109 DOI: 10.1099/ijs.0.000158-0  0.48
2009 Lowell JL, Gordon N, Engstrom D, Stanford JA, Holben WE, Gannon JE. Habitat heterogeneity and associated microbial community structure in a small-scale floodplain hyporheic flow path. Microbial Ecology. 58: 611-20. PMID 19462196 DOI: 10.1007/s00248-009-9525-9  0.48
2009 Morales SE, Holben WE. Empirical testing of 16S rRNA gene PCR primer pairs reveals variance in target specificity and efficacy not suggested by in silico analysis. Applied and Environmental Microbiology. 75: 2677-83. PMID 19251890 DOI: 10.1128/AEM.02166-08  0.48
2009 Ramamoorthy S, Piotrowski JS, Langner HW, Holben WE, Morra MJ, Rosenzweig RF. Ecology of sulfate-reducing bacteria in an iron-dominated, mining-impacted freshwater sediment. Journal of Environmental Quality. 38: 675-84. PMID 19244488 DOI: 10.2134/jeq2007.0577  0.48
2009 Morales SE, Cosart TF, Johnson JV, Holben WE. Extensive phylogenetic analysis of a soil bacterial community illustrates extreme taxon evenness and the effects of amplicon length, degree of coverage, and DNA fractionation on classification and ecological parameters. Applied and Environmental Microbiology. 75: 668-75. PMID 19011079 DOI: 10.1128/AEM.01757-08  0.48
2009 Pollock JL, Callaway RM, Thelen GC, Holben WE. Catechin-metal interactions as a mechanism for conditional allelopathy by the invasive plant Centaurea maculosa Journal of Ecology. 97: 1234-1242. DOI: 10.1111/j.1365-2745.2009.01553.x  0.48
2009 Baelum J, Jacobsen CS, Nicolaisen MH, Strobel BW, Sorensen J, Holben WE. Measuring functional gene transcripts of microbial phenoxy acid degraders through tfdA-mRNA extracted from a natural soil environment In Situ and On-Site Bioremediation-2009: Proceedings of the 10th International in Situ and On-Site Bioremediation Symposium 0.48
2008 Morales SE, Cosart T, Johnson JV, Holben WE. Supplemental programs for enhanced recovery of data from the DOTUR application. Journal of Microbiological Methods. 75: 572-5. PMID 18703094 DOI: 10.1016/j.mimet.2008.07.017  0.48
2008 Inderjit, Pollock JL, Callaway RM, Holben W. Phytotoxic effects of (+/-)-catechin in vitro, in soil, and in the field. Plos One. 3: e2536. PMID 18648546 DOI: 10.1371/journal.pone.0002536  0.48
2008 Baelum J, Nicolaisen MH, Holben WE, Strobel BW, Sørensen J, Jacobsen CS. Direct analysis of tfdA gene expression by indigenous bacteria in phenoxy acid amended agricultural soil. The Isme Journal. 2: 677-87. PMID 18356824 DOI: 10.1038/ismej.2008.21  0.48
2008 Adams AS, Six DL, Adams SM, Holben WE. In vitro interactions between yeasts and bacteria and the fungal symbionts of the mountain pine beetle (Dendroctonus ponderosae). Microbial Ecology. 56: 460-6. PMID 18322728 DOI: 10.1007/s00248-008-9364-0  0.48
2007 Bender M, Holben WE, Sørensen SJ, Jacobsen CS. Use of a PNA probe to block DNA-mediated PCR product formation in prokaryotic RT-PCR. Biotechniques. 42: 609-10, 612-4. PMID 17515199 DOI: 10.2144/000112437  0.48
2007 Jacobsen CS, Holben WE. Quantification of mRNA in Salmonella sp. seeded soil and chicken manure using magnetic capture hybridization RT-PCR. Journal of Microbiological Methods. 69: 315-21. PMID 17383760 DOI: 10.1016/j.mimet.2007.02.001  0.48
2006 Mummey D, Holben W, Six J, Stahl P. Spatial stratification of soil bacterial populations in aggregates of diverse soils. Microbial Ecology. 51: 404-11. PMID 16598640 DOI: 10.1007/s00248-006-9020-5  0.48
2006 Kovacik WP, Takai K, Mormile MR, McKinley JP, Brockman FJ, Fredrickson JK, Holben WE. Molecular analysis of deep subsurface Cretaceous rock indicates abundant Fe(III)- and S(zero)-reducing bacteria in a sulfate-rich environment. Environmental Microbiology. 8: 141-55. PMID 16343329 DOI: 10.1111/j.1462-2920.2005.00876.x  0.48
2006 DeLuca TH, MacKenzie MD, Gundale MJ, Holben WE. Wildfire-produced charcoal directly influences nitrogen cycling in ponderosa pine forests Soil Science Society of America Journal. 70: 448-453. DOI: 10.2136/sssaj2005.0096  0.48
2006 Ramsey PW, Rillig MC, Feris KP, Holben WE, Gannon JE. Choice of methods for soil microbial community analysis: PLFA maximizes power compared to CLPP and PCR-based approaches Pedobiologia. 50: 275-280. DOI: 10.1016/j.pedobi.2006.03.003  0.48
2005 Ramsey PW, Rillig MC, Feris KP, Gordon NS, Moore JN, Holben WE, Gannon JE. Relationship between communities and processes; new insights from a field study of a contaminated ecosystem. Ecology Letters. 8: 1201-10. PMID 21352444 DOI: 10.1111/j.1461-0248.2005.00821.x  0.48
2005 Driver JD, Holben WE, Rillig MC. Characterization of glomalin as a hyphal wall component of arbuscular mycorrhizal fungi Soil Biology and Biochemistry. 37: 101-106. DOI: 10.1016/j.soilbio.2004.06.011  0.48
2005 Mummey DL, Rillig MC, Holben WE. Neighboring plant influences on arbuscular mycorrhizal fungal community composition as assessed by T-RFLP analysis Plant and Soil. 271: 83-90. DOI: 10.1007/s11104-004-2066-6  0.48
2004 Feris KP, Ramsey PW, Rillig M, Moore JN, Gannon JE, Holben WE. Determining rates of change and evaluating group-level resiliency differences in hyporheic microbial communities in response to fluvial heavy-metal deposition. Applied and Environmental Microbiology. 70: 4756-65. PMID 15294812 DOI: 10.1128/AEM.70.8.4756-4765.2004  0.48
2004 Feris KP, Ramsey PW, Frazar C, Rillig M, Moore JN, Gannon JE, Holben WE. Seasonal dynamics of shallow-hyporheic-zone microbial community structure along a heavy-metal contamination gradient. Applied and Environmental Microbiology. 70: 2323-31. PMID 15066828 DOI: 10.1128/AEM.70.4.2323-2331.2004  0.48
2004 Holben WE, Feris KP, Kettunen A, Apajalahti JH. GC fractionation enhances microbial community diversity assessment and detection of minority populations of bacteria by denaturing gradient gel electrophoresis. Applied and Environmental Microbiology. 70: 2263-70. PMID 15066821 DOI: 10.1128/AEM.70.4.2263-2270.2004  0.48
2004 Callaway RM, Thelen GC, Rodriguez A, Holben WE. Soil biota and exotic plant invasion. Nature. 427: 731-3. PMID 14973484 DOI: 10.1038/nature02322  0.48
2003 Feris KP, Ramsey PW, Frazar C, Rillig MC, Gannon JE, Holben WE. Structure and seasonal dynamics of hyporheic zone microbial communities in free-stone rivers of the western United States. Microbial Ecology. 46: 200-15. PMID 14708745 DOI: 10.1007/s00248-002-0100-x  0.48
2003 Apajalahti JH, Kettunen A, Nurminen PH, Jatila H, Holben WE. Selective plating underestimates abundance and shows differential recovery of bifidobacterial species from human feces. Applied and Environmental Microbiology. 69: 5731-5. PMID 12957972 DOI: 10.1128/AEM.69.9.5731-5735.2003  0.48
2003 Feris K, Ramsey P, Frazar C, Moore JN, Gannon JE, Holben WE. Differences in hyporheic-zone microbial community structure along a heavy-metal contamination gradient. Applied and Environmental Microbiology. 69: 5563-73. PMID 12957946 DOI: 10.1128/AEM.69.9.5563-5573.2003  0.48
2003 Takai K, Mormile MR, McKinley JP, Brockman FJ, Holben WE, Kovacik WP, Fredrickson JK. Shifts in archaeal communities associated with lithological and geochemical variations in subsurface Cretaceous rock. Environmental Microbiology. 5: 309-20. PMID 12662178 DOI: 10.1046/j.1462-2920.2003.00421.x  0.48
2002 Apajalahti JH, Kettunen H, Kettunen A, Holben WE, Nurminen PH, Rautonen N, Mutanen M. Culture-independent microbial community analysis reveals that inulin in the diet primarily affects previously unknown bacteria in the mouse cecum. Applied and Environmental Microbiology. 68: 4986-95. PMID 12324348 DOI: 10.1128/AEM.68.10.4986-4995.2002  0.48
2002 Holben WE, Williams P, Gilbert M, Saarinen M, Särkilahti LK, Apajalahti JH. Phylogenetic analysis of intestinal microflora indicates a novel Mycoplasma phylotype in farmed and wild salmon. Microbial Ecology. 44: 175-85. PMID 12082453 DOI: 10.1007/s00248-002-1011-6  0.48
2001 Apajalahti JH, Kettunen A, Bedford MR, Holben WE. Percent G+C profiling accurately reveals diet-related differences in the gastrointestinal microbial community of broiler chickens. Applied and Environmental Microbiology. 67: 5656-67. PMID 11722920 DOI: 10.1128/AEM.67.12.5656-5667.2001  0.48
2001 DeFlaun MF, Fuller ME, Zhang P, Johnson WP, Mailloux BJ, Holben WE, Kovacik WP, Balkwill DL, Onstott TC. Comparison of methods for monitoring bacterial transport in the subsurface. Journal of Microbiological Methods. 47: 219-31. PMID 11576686 DOI: 10.1016/S0167-7012(01)00307-4  0.48
2001 Johnson WP, Zhang P, Fuller ME, Scheibe TD, Mailloux BJ, Onstott TC, Deflaun MF, Hubbard SS, Radtke J, Kovacik WP, Holben W. Ferrographic tracking of bacterial transport in the field at the narrow channel focus area, Oyster, VA. Environmental Science & Technology. 35: 182-91. PMID 11352009 DOI: 10.1021/es001170e  0.48
2000 Holben WE, Ostrom PH. Monitoring bacterial transport by stable isotope enrichment of cells. Applied and Environmental Microbiology. 66: 4935-9. PMID 11055946 DOI: 10.1128/AEM.66.11.4935-4939.2000  0.48
2000 Di Meo CA, Wilbur AE, Holben WE, Feldman RA, Vrijenhoek RC, Cary SC. Genetic variation among endosymbionts of widely distributed vestimentiferan tubeworms. Applied and Environmental Microbiology. 66: 651-8. PMID 10653731 DOI: 10.1128/AEM.66.2.651-658.2000  0.48
1998 Apajalahti JH, Särkilahti LK, Mäki BR, Heikkinen JP, Nurminen PH, Holben WE. Effective recovery of bacterial DNA and percent-guanine-plus-cytosine-based analysis of community structure in the gastrointestinal tract of broiler chickens. Applied and Environmental Microbiology. 64: 4084-8. PMID 9758849  0.48
1998 Santo Domingo JW, Kaufman MG, Klug MJ, Holben WE, Harris D, Tiedje JM. Influence of diet on the structure and function of the bacterial hindgut community of crickets Molecular Ecology. 7: 761-767. DOI: 10.1046/j.1365-294x.1998.00390.x  0.48
1998 Kieft TL, Murphy EM, Haldeman DL, Amy PS, Bjornstad BN, McDonald EV, Ringelberg DB, White DC, Stair J, Griffiths RP, Gsell TC, Holben WE, Boone DR. Microbial transport, survival, and succession in a sequence of buried sediments Microbial Ecology. 36: 336-348. DOI: 10.1007/s002489900120  0.48
1998 Holben WE, Noto K, Sumino T, Suwa Y. Molecular analysis of bacterial communities in a three-compartment granular activated sludge system indicates community-level control by incompatible nitrification processes Applied and Environmental Microbiology. 64: 2528-2532.  0.48
1997 Gsell TC, Holben WE, Ventullo RM. Characterization of the sediment bacterial community in groundwater discharge zones of an alkaline fen: a seasonal study. Applied and Environmental Microbiology. 63: 3111-8. PMID 9251197  0.48
1996 Suwa Y, Wright AD, Fukimori F, Nummy KA, Hausinger RP, Holben WE, Forney LJ. Characterization of a chromosomally encoded 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. strain RASC. Applied and Environmental Microbiology. 62: 2464-9. PMID 8779585  0.48
1996 Matheson VG, Forney LJ, Suwa Y, Nakatsu CH, Sexstone AJ, Holben WE. Evidence for acquisition in nature of a chromosomal 2,4- dichlorophenoxyacetic acid/α-ketoglutarate dioxygenase gene by different Burkholderia spp Applied and Environmental Microbiology. 62: 2457-2463.  0.48
1995 Tonso NL, Matheson VG, Holben WE. Polyphasic characterization of a suite of bacterial isolates capable of degrading 2,4-D. Microbial Ecology. 30: 3-24. PMID 24185409 DOI: 10.1007/BF00184510  0.48
1995 Top EM, Holben WE, Forney LJ. Characterization of diverse 2,4-dichlorophenoxyacetic acid-degradative plasmids isolated from soil by complementation. Applied and Environmental Microbiology. 61: 1691-8. PMID 7646006  0.48
1995 Holben WE, Harris D. DNA-based monitoring of total bacterial community structure in environmental samples. Molecular Ecology. 4: 627-31. PMID 7582170  0.48
1995 Fulthorpe RR, McGowan C, Maltseva OV, Holben WE, Tiedje JM. 2,4-Dichlorophenoxyacetic acid-degrading bacteria contain mosaics of catabolic genes. Applied and Environmental Microbiology. 61: 3274-81. PMID 7574638  0.48
1995 Ka JO, Burauel P, Bronson JA, Holben WE, Tiedje JM. DNA probe analysis of microbial community selected in field by long- term 2,4-D application Soil Science Society of America Journal. 59: 1581-1587.  0.48
1994 Ka JO, Holben WE, Tiedje JM. Analysis of competition in soil among 2,4-dichlorophenoxyacetic acid-degrading bacteria. Applied and Environmental Microbiology. 60: 1121-8. PMID 8017909  0.48
1994 Ka JO, Holben WE, Tiedje JM. Use of gene probes to aid in recovery and identification of functionally dominant 2,4-dichlorophenoxyacetic acid-degrading populations in soil. Applied and Environmental Microbiology. 60: 1116-20. PMID 8017908  0.48
1994 Ka JO, Holben WE, Tiedje JM. Genetic and phenotypic diversity of 2,4-dichlorophenoxyacetic acid (2,4-D)-degrading bacteria isolated from 2,4-D-treated field soils. Applied and Environmental Microbiology. 60: 1106-15. PMID 8017907  0.48
1992 Holben WE, Schroeter BM, Calabrese VG, Olsen RH, Kukor JK, Biederbeck VO, Smith AE, Tiedje JM. Gene probe analysis of soil microbial populations selected by amendment with 2,4-dichlorophenoxyacetic acid. Applied and Environmental Microbiology. 58: 3941-8. PMID 1476437  0.48
1989 Jansson JK, Holben WE, Tiedje JM. Detection in soil of a deletion in an engineered DNA sequence by using DNA probes. Applied and Environmental Microbiology. 55: 3022-5. PMID 2624468  0.48
1988 Holben WE, Jansson JK, Chelm BK, Tiedje JM. DNA Probe Method for the Detection of Specific Microorganisms in the Soil Bacterial Community. Applied and Environmental Microbiology. 54: 703-711. PMID 16347582  0.48
1988 Holben WE, Tiedje JM. Applications of nucleic acid hybridization in microbial ecology Ecology. 69: 561-568.  0.48
1985 Holben WE, Prasad SM, Morgan EA. Antitermination by both the promoter and the leader regions of an Escherichia coli ribosomal RNA operon. Proceedings of the National Academy of Sciences of the United States of America. 82: 5073-7. PMID 3895228  1
1984 Holben WE, Morgan EA. Antitermination of transcription from an Escherichia coli ribosomal RNA promoter. Proceedings of the National Academy of Sciences of the United States of America. 81: 6789-93. PMID 6208558  1
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