Stephen C. Harvey - Publications

Affiliations: 
1973-2002 Biochemistry University of Alabama, Birmingham, Birmingham, AL, United States 
 2003- Georgia Institute of Technology, Atlanta, GA 
 2015- University of Pennsylvania, Philadelphia, PA, United States 
Area:
Biochemistry
Website:
http://www.harveylabpenn.net/

43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2011 Harvey SC, Petrov AS, Devkota B, Boz MB. Computational approaches to modeling viral structure and assembly. Methods in Enzymology. 487: 513-43. PMID 21187237 DOI: 10.1016/B978-0-12-381270-4.00018-4  0.792
2011 Boz MB, Preeprem T, Harvey SC. Assembly of an Unenveloped Icosahedral RNA Viruses using Coarse-Grained Models Biophysical Journal. 100: 402a. DOI: 10.1016/J.Bpj.2010.12.2387  0.767
2009 Harvey SC, Petrov AS, Devkota B, Boz MB. Viral assembly: a molecular modeling perspective. Physical Chemistry Chemical Physics : Pccp. 11: 10553-64. PMID 20145801 DOI: 10.1039/B912884K  0.786
2009 Taylor DJ, Devkota B, Huang AD, Topf M, Narayanan E, Sali A, Harvey SC, Frank J. Comprehensive molecular structure of the eukaryotic ribosome. Structure (London, England : 1993). 17: 1591-604. PMID 20004163 DOI: 10.1016/J.Str.2009.09.015  0.674
2009 Devkota B, Petrov AS, Lemieux S, Boz MB, Tang L, Schneemann A, Johnson JE, Harvey SC. Structural and electrostatic characterization of pariacoto virus: implications for viral assembly. Biopolymers. 91: 530-8. PMID 19226622 DOI: 10.1002/Bip.21168  0.793
2009 Boz MB, Harvey SC. Capsid Assembly in Small, Unenveloped Icosahedral DNA and RNA Viruses Biophysical Journal. 96: 419a. DOI: 10.1016/J.Bpj.2008.12.2144  0.759
2008 Tan RK, Devkota B, Harvey SC. YUP.SCX: coaxing atomic models into medium resolution electron density maps. Journal of Structural Biology. 163: 163-74. PMID 18572416 DOI: 10.1016/J.Jsb.2008.05.001  0.671
2008 Mears JA, Stagg SM, Harvey SC. Modeling Large RNA Assemblies using a Reduced Representation Handbook of Rna Biochemistry. 546-559. DOI: 10.1002/9783527619504.ch33  0.721
2007 Petrov AS, Boz MB, Harvey SC. The conformation of double-stranded DNA inside bacteriophages depends on capsid size and shape. Journal of Structural Biology. 160: 241-8. PMID 17919923 DOI: 10.1016/J.Jsb.2007.08.012  0.764
2006 Mears JA, Sharma MR, Gutell RR, McCook AS, Richardson PE, Caulfield TR, Agrawal RK, Harvey SC. A structural model for the large subunit of the mammalian mitochondrial ribosome. Journal of Molecular Biology. 358: 193-212. PMID 16510155 DOI: 10.1016/J.Jmb.2006.01.094  0.792
2005 Stagg SM, Harvey SC. Exploring the flexibility of ribosome recycling factor using molecular dynamics. Biophysical Journal. 89: 2659-66. PMID 16055531 DOI: 10.1529/Biophysj.104.052373  0.609
2005 Richardson PE, Manchekar M, Dashti N, Jones MK, Beigneux A, Young SG, Harvey SC, Segrest JP. Assembly of lipoprotein particles containing apolipoprotein-B: structural model for the nascent lipoprotein particle. Biophysical Journal. 88: 2789-800. PMID 15653747 DOI: 10.1529/Biophysj.104.046235  0.648
2004 Li L, Chen J, Mishra VK, Kurtz JA, Cao D, Klon AE, Harvey SC, Anantharamaiah GM, Segrest JP. Double belt structure of discoidal high density lipoproteins: molecular basis for size heterogeneity. Journal of Molecular Biology. 343: 1293-311. PMID 15491614 DOI: 10.1016/J.Jmb.2004.09.017  0.725
2003 Valle M, Zavialov A, Li W, Stagg SM, Sengupta J, Nielsen RC, Nissen P, Harvey SC, Ehrenberg M, Frank J. Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy. Nature Structural Biology. 10: 899-906. PMID 14566331 DOI: 10.1038/Nsb1003  0.578
2003 Dupuy LC, Kelly NJ, Elgavish TE, Harvey SC, Morrow CD. Probing the importance of tRNA anticodon: human immunodeficiency virus type 1 (HIV-1) RNA genome complementarity with an HIV-1 that selects tRNA(Glu) for replication. Journal of Virology. 77: 8756-64. PMID 12885895 DOI: 10.1128/Jvi.77.16.8756-8764.2003  0.769
2003 Gao H, Sengupta J, Valle M, Korostelev A, Eswar N, Stagg SM, Van Roey P, Agrawal RK, Harvey SC, Sali A, Chapman MS, Frank J. Study of the structural dynamics of the E coli 70S ribosome using real-space refinement. Cell. 113: 789-801. PMID 12809609 DOI: 10.1016/S0092-8674(03)00427-6  0.602
2003 Stagg SM, Mears JA, Harvey SC. A structural model for the assembly of the 30S subunit of the ribosome. Journal of Molecular Biology. 328: 49-61. PMID 12683996 DOI: 10.1016/S0022-2836(03)00174-8  0.736
2003 Sheldahl C, Xing J, Dong WJ, Harvey SC, Cheung HC. The calcium-saturated cTnI/cTnC complex: structure of the inhibitory region of cTnI. Biophysical Journal. 84: 1057-64. PMID 12547787 DOI: 10.1016/S0006-3495(03)74922-4  0.775
2002 Klon AE, Segrest JP, Harvey SC. Molecular dynamics simulations on discoidal HDL particles suggest a mechanism for rotation in the apo A-I belt model. Journal of Molecular Biology. 324: 703-21. PMID 12460572 DOI: 10.1016/S0022-2836(02)01143-9  0.725
2002 Stagg SM, Valle M, Agrawal RK, Frank J, Harvey SC. Problems with the transorientation hypothesis. Rna (New York, N.Y.). 8: 1093-4. PMID 12358427 DOI: 10.1017/S1355838202027061  0.599
2002 Klon AE, Segrest JP, Harvey SC. Comparative models for human apolipoprotein A-I bound to lipid in discoidal high-density lipoprotein particles. Biochemistry. 41: 10895-905. PMID 12206659 DOI: 10.1021/Bi020315M  0.711
2002 Mears JA, Cannone JJ, Stagg SM, Gutell RR, Agrawal RK, Harvey SC. Modeling a minimal ribosome based on comparative sequence analysis. Journal of Molecular Biology. 321: 215-34. PMID 12144780 DOI: 10.1016/S0022-2836(02)00568-5  0.743
2002 Flood C, Gustafsson M, Richardson PE, Harvey SC, Segrest JP, Borén J. Identification of the proteoglycan binding site in apolipoprotein B48. The Journal of Biological Chemistry. 277: 32228-33. PMID 12070165 DOI: 10.1074/Jbc.M204053200  0.618
2001 Elgavish T, Cannone JJ, Lee JC, Harvey SC, Gutell RR. AA.AG@helix.ends: A:A and A:G base-pairs at the ends of 16 S and 23 S rRNA helices. Journal of Molecular Biology. 310: 735-53. PMID 11453684 DOI: 10.1006/Jmbi.2001.4807  0.787
2001 Stagg SM, Frazer-Abel AA, Hagerman PJ, Harvey SC. Structural studies of the tRNA domain of tmRNA. Journal of Molecular Biology. 309: 727-35. PMID 11397092 DOI: 10.1006/Jmbi.2001.4632  0.596
2000 Sardesai NY, Stagg SM, Vanloock MS, Harvey SC, Schimmel P. RNA scaffolds for minihelix-based aminoacyl transfer: design of "transpeptizymes". Journal of Biomolecular Structure & Dynamics. 17: 29-37. PMID 22607404 DOI: 10.1080/07391102.2000.10506601  0.779
2000 VanLoock MS, Agrawal RK, Gabashvili IS, Qi L, Frank J, Harvey SC. Movement of the decoding region of the 16 S ribosomal RNA accompanies tRNA translocation. Journal of Molecular Biology. 304: 507-15. PMID 11099376 DOI: 10.1006/Jmbi.2000.4213  0.707
2000 Klon AE, Jones MK, Segrest JP, Harvey SC. Molecular belt models for the apolipoprotein A-I Paris and Milano mutations. Biophysical Journal. 79: 1679-85. PMID 10969027 DOI: 10.1016/S0006-3495(00)76417-4  0.712
1999 Segrest JP, Jones MK, Klon AE, Sheldahl CJ, Hellinger M, De Loof H, Harvey SC. A detailed molecular belt model for apolipoprotein A-I in discoidal high density lipoprotein. The Journal of Biological Chemistry. 274: 31755-8. PMID 10542194 DOI: 10.1074/jbc.274.45.31755  0.772
1999 Sheldahl C, Harvey SC. Molecular dynamics on a model for nascent high-density lipoprotein: role of salt bridges. Biophysical Journal. 76: 1190-8. PMID 10049304 DOI: 10.1016/S0006-3495(99)77283-8  0.776
1999 Wang R, Alexander RW, VanLoock M, Vladimirov S, Bukhtiyarov Y, Harvey SC, Cooperman BS. Three-dimensional placement of the conserved 530 loop of 16 S rRNA and of its neighboring components in the 30 S subunit. Journal of Molecular Biology. 286: 521-40. PMID 9973568 DOI: 10.1006/Jmbi.1998.2493  0.723
1999 VanLoock MS, Easterwood TR, Harvey SC. Major groove binding of the tRNA/mRNA complex to the 16 S ribosomal RNA decoding site. Journal of Molecular Biology. 285: 2069-78. PMID 9925785 DOI: 10.1006/Jmbi.1998.2442  0.714
1999 Elgavish T, VanLoock MS, Harvey SC. Exploring three-dimensional structures of the HIV-1 RNA/tRNALys3 initiation complex. Journal of Molecular Biology. 285: 449-53. PMID 9878419 DOI: 10.1006/Jmbi.1998.2310  0.782
1998 VanLoock MS, Harris BA, Harvey SC. To knot or not to knot? Examination of 16S ribosomal RNA models. Journal of Biomolecular Structure & Dynamics. 16: 709-13. PMID 10052626 DOI: 10.1080/07391102.1998.10508282  0.717
1997 VanLoock MS, Easterwood TR, Harvey SC. tRNA/mRNA/rRNA interactions in the Escherichia coli ribosomal decoding site with and without bound aminoglycoside. Nucleic Acids Symposium Series. 68. PMID 9478209  0.687
1989 Lopez-Lacomba JL, Guzman M, Cortijo M, Mateo PL, Aguirre R, Harvey SC, Cheung HC. Differential scanning calorimetric study of the thermal unfolding of myosin rod, light meromyosin, and subfragment 2. Biopolymers. 28: 2143-59. PMID 2690963 DOI: 10.1002/Bip.360281208  0.514
1980 Harvey SC, Cheung HC. Transport properties of particles with segmental flexibility. II. Decay of fluorescence polarization anisotropy from hinged macromolecules Biopolymers. 19: 913-930. DOI: 10.1002/Bip.1980.360190414  0.545
1977 Harvey SC, Cheung HC. Fluorescence depolarization studies on the flexibility of myosin rod. Biochemistry. 16: 5181-7. PMID 921927 DOI: 10.1021/Bi00643A004  0.511
1977 Harvey SC, Cheung HC, Thames KE. Cooperativity in F-actin filaments on binding of myosin subfragments, demonstrated by fluorescence of 1, N6- ethenoadenosine diphosphate. Archives of Biochemistry and Biophysics. 179: 391-6. PMID 322615 DOI: 10.1016/0003-9861(77)90126-6  0.497
1976 Harvey SC, Cheung HC. Fluorescence studies of 1,N6-ethenoadenosine triphosphate bound to G-actin: the nucleotide base is inaccessible to water. Biochemical and Biophysical Research Communications. 73: 865-8. PMID 15625854 DOI: 10.1016/0006-291X(76)90201-1  0.506
1976 Harvey SC, Cheung HC. Fluorescence studies of 1,N6-ethenoadenosine triphosphate bound to G-actin: The nucleotide base is inaccessible to water Biochemical and Biophysical Research Communications. 73: 865-868. DOI: 10.1016/0006-291X(76)90201-1  0.505
1974 Thames KE, Cheung HC, Harvey SC. Binding of 1,N6-ethanoadenosine triphosphate to actin. Biochemical and Biophysical Research Communications. 60: 1252-61. PMID 4214008 DOI: 10.1016/0006-291X(74)90333-7  0.502
1972 Harvey SC, Cheung HC. Computer simulation of fluorescence depolarization due to brownian motion. Proceedings of the National Academy of Sciences of the United States of America. 69: 3670-2. PMID 16592039 DOI: 10.1073/Pnas.69.12.3670  0.525
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