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Paul C. Zamecnik - Related publications

Affiliations: 
Harvard Medical School, Boston, MA, United States 
Area:
Protein biosynthesis and anti-sense DNA
Website:
http://www.fa.hms.harvard.edu/about-our-faculty/memorial-minutes/z/paul-charles-zamecnik/
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Xiao L, Jun YW, Kool ET. DNA tiling enables precise acylation-based labeling and control of mRNA. Angewandte Chemie (International Ed. in English). PMID 34624169 DOI: 10.1002/anie.202112106   
2021 Zhao J, Hu H, Wang S, Wang L, Wang R. Regulation and Site-Specific Covalent Labeling of via Genetic Encoding Expansion. Genes. 12. PMID 34680884 DOI: 10.3390/genes12101488   
2021 Zhao EM, Mao AS, de Puig H, Zhang K, Tippens ND, Tan X, Ran FA, Han I, Nguyen PQ, Chory EJ, Hua TY, Ramesh P, Thompson DB, Oh CY, Zigon ES, et al. RNA-responsive elements for eukaryotic translational control. Nature Biotechnology. PMID 34711989 DOI: 10.1038/s41587-021-01068-2   
2021 Savita BK, Dalal V, Choudhary S, Gupta DN, Das N, Tomar S, Kumar P, Roy P, Sharma AK. Characterization of recombinant pumpkin 2S albumin and mutation studies to unravel potential DNA/RNA binding site. Biochemical and Biophysical Research Communications. 580: 28-34. PMID 34610489 DOI: 10.1016/j.bbrc.2021.09.076   
2021 Xiao S, Guo S, Han J, Sun Y, Wang M, Chen Y, Fang X, Yang F, Mu Y, Zhang L, Ding Y, Zhang N, Jiang H, Chen K, Zhao K, et al. High-Throughput-Methyl-Reading (HTMR) assay: a solution based on nucleotide methyl-binding proteins enables large-scale screening for DNA/RNA methyltransferases and demethylases. Nucleic Acids Research. PMID 34718755 DOI: 10.1093/nar/gkab989   
2021 Ingram ZM, Schneider DA, Lucius AL. Transient-state kinetic analysis of multi-nucleotide addition catalyzed by RNA polymerase I. Biophysical Journal. 120: 4378-4390. PMID 34509510 DOI: 10.1016/j.bpj.2021.09.008   
2021 Feng JY, Ray AS. HCV RdRp, sofosbuvir and beyond. The Enzymes. 49: 63-82. PMID 34696839 DOI: 10.1016/bs.enz.2021.06.003   
2021 Chérif N, Zouari M, Amdouni F, Mefteh M, Ksouri A, Bouhaouala-Zahar B, Raouafi N. Direct Amperometric Sensing of Fish Nodavirus RNA Using Gold Nanoparticle/DNA-Based Bioconjugates. Pathogens (Basel, Switzerland). 10. PMID 34451396 DOI: 10.3390/pathogens10080932   
2021 Lambert M, Benmoussa A, Diallo I, Ouellet-Boutin K, Dorval V, Majeau N, Joly-Beauparlant C, Droit A, Bergeron A, Têtu B, Fradet Y, Pouliot F, Provost P. Identification of Abundant and Functional dodecaRNAs (doRNAs) Derived from Ribosomal RNA. International Journal of Molecular Sciences. 22. PMID 34575920 DOI: 10.3390/ijms22189757   
2021 Xu Y, Wu Y, Wang L, Ren Z, Song L, Zhang H, Qian C, Wang Q, He Z, Wan W. Autophagy deficiency activates rDNA transcription. Autophagy. 1-12. PMID 34612149 DOI: 10.1080/15548627.2021.1974178   
2021 Hui MP, Belasco JG. Multifaceted impact of a nucleoside monophosphate kinase on 5'-end-dependent mRNA degradation in bacteria. Nucleic Acids Research. PMID 34643703 DOI: 10.1093/nar/gkab884   
2021 Basu A, Penumutchu S, Nguyen K, Mbonye U, Tolbert BS, Karn J, Komar AA, Mazumder B. A structurally conserved RNA element within SARS-CoV-2 ORF1a RNA and S mRNA regulates translation in response to viral S protein-induced signaling in human lung cells. Journal of Virology. JVI0167821. PMID 34757848 DOI: 10.1128/JVI.01678-21   
2021 Zayani R, Rezig D, Fares W, Marrakchi M, Essafi M, Raouafi N. Multiplexed Magnetofluorescent Bioplatform for the Sensitive Detection of SARS-CoV-2 Viral RNA without Nucleic Acid Amplification. Analytical Chemistry. 93: 11225-11232. PMID 34338520 DOI: 10.1021/acs.analchem.1c01950   
2021 Liu C, Lin P, Zhao J, Xie H, Li R, Yang X, Wang N, Jia H, Jiang S, Zhang K, Yu X. Knockdown of long noncoding RNA AC245100.4 inhibits the tumorigenesis of prostate cancer cells via the STAT3/ axis. Epigenomics. PMID 34657447 DOI: 10.2217/epi-2021-0293   
2021 Johnson KA, Dangerfield T. Mechanisms of inhibition of viral RNA replication by nucleotide analogs. The Enzymes. 49: 39-62. PMID 34696838 DOI: 10.1016/bs.enz.2021.07.001   
2021 Harrington C, Sun H, Jeffries-Miles S, Gerloff N, Mandelbaum M, Pang H, Collins N, Burns CC, Vega E. Culture-Independent Detection of Poliovirus in Stool Samples by Direct RNA Extraction. Microbiology Spectrum. e0066821. PMID 34756088 DOI: 10.1128/Spectrum.00668-21   
2021 Kumar M, Roy A, Rawat RS, Alok A, Tetala KKR, Biswas NR, Kaur P, Kumar S. Identification and structural studies of natural inhibitors against SARS-CoV-2 viral RNA methyltransferase (NSP16). Journal of Biomolecular Structure & Dynamics. 1-11. PMID 34766876 DOI: 10.1080/07391102.2021.1997821   
2021 Cáceres-Gutiérrez RE, Andonegui MA, Oliva-Rico DA, González-Barrios R, Luna F, Arriaga-Canon C, López-Saavedra A, Prada D, Castro C, Parmentier L, Díaz-Chávez J, Alfaro-Mora Y, Navarro-Delgado EI, Fabian-Morales E, Tran B, et al. Proteasome inhibition alters mitotic progression through the upregulation of centromeric α-satellite RNAs. The Febs Journal. PMID 34739170 DOI: 10.1111/febs.16261   
2021 Gay LA, Turner PC, Renne R. Modified Cross-Linking, Ligation, and Sequencing of Hybrids (qCLASH) to Identify MicroRNA Targets. Current Protocols. 1: e257. PMID 34610213 DOI: 10.1002/cpz1.257   
2021 Ryu YC, Lee YE, Hwang BH. Efficient and safe small RNA delivery to macrophage using peptide-based nanocomplex. Biotechnology and Bioengineering. PMID 34761810 DOI: 10.1002/bit.27988   
2021 Endo M, Kim JI, Shioi NA, Iwai S, Kuraoka I. endonuclease V is a ribonuclease specific for inosine-containing single-stranded RNA. Open Biology. 11: 210148. PMID 34665969 DOI: 10.1098/rsob.210148   
2021 Ageely EA, Chilamkurthy R, Jana S, Abdullahu L, O'Reilly D, Jensik PJ, Damha MJ, Gagnon KT. Gene editing with CRISPR-Cas12a guides possessing ribose-modified pseudoknot handles. Nature Communications. 12: 6591. PMID 34782635 DOI: 10.1038/s41467-021-26989-z   
2021 Zerio CJ, Cunningham TA, Tulino AS, Alimusa EA, Buckley TM, Moore KT, Dodson M, Wilson NC, Ambrose AJ, Shi T, Sivinski J, Essegian DJ, Zhang DD, Schürer SC, Schatz JH, et al. Discovery of an eIF4A Inhibitor with a Novel Mechanism of Action. Journal of Medicinal Chemistry. 64: 15727-15746. PMID 34676755 DOI: 10.1021/acs.jmedchem.1c01014   
2021 Nelson JW, Randolph PB, Shen SP, Everette KA, Chen PJ, Anzalone AV, An M, Newby GA, Chen JC, Hsu A, Liu DR. Engineered pegRNAs improve prime editing efficiency. Nature Biotechnology. PMID 34608327 DOI: 10.1038/s41587-021-01039-7   
2021 Sato Y, Shahi S, Telengech P, Hisano S, Cornejo C, Rigling D, Kondo H, Suzuki N. A new tetra-segmented splipalmivirus with divided RdRP domains from Cryphonectria naterciae, a fungus found on chestnut and cork oak trees in Europe: New splipalmivirus from Cryphonectria naterciae. Virus Research. 198606. PMID 34688782 DOI: 10.1016/j.virusres.2021.198606   
2021 Wang X, Hu C, Ye W, Wang J, Dong X, Xu J, Li X, Zhang M, Lu H, Zhang F, Wu W, Dai S, Wang HW, Chen Z. Structure of Rift Valley fever virus RNA-dependent RNA polymerase. Journal of Virology. JVI0171321. PMID 34787453 DOI: 10.1128/JVI.01713-21   
2021 Ju Y, Kim J, Park Y, Lee CY, Kim K, Hong KH, Lee H, Yong D, Park HG. Rapid and accurate clinical testing for COVID-19 by nicking and extension chain reaction system-based amplification (NESBA). Biosensors & Bioelectronics. 196: 113689. PMID 34688112 DOI: 10.1016/j.bios.2021.113689   
2021 Mulroney L, Wulf M, Schildkraut I, Tzertzinis G, Buswell J, Jain M, Olsen HE, Diekhans M, Corrêa IR, Akeson M, Ettwiller L. Identification of high confidence human poly(A) RNA isoform scaffolds using nanopore sequencing. Rna (New York, N.Y.). PMID 34728536 DOI: 10.1261/rna.078703.121   
2021 Mulroney L, Wulf M, Schildkraut I, Tzertzinis G, Buswell J, Jain M, Olsen HE, Diekhans M, Corrêa IR, Akeson M, Ettwiller L. Identification of high confidence human poly(A) RNA isoform scaffolds using nanopore sequencing. Rna (New York, N.Y.). PMID 34728536 DOI: 10.1261/rna.078703.121   
2021 Laudenbach BT, Krey K, Emslander Q, Andersen LL, Reim A, Scaturro P, Mundigl S, Dächert C, Manske K, Moser M, Ludwig J, Wohlleber D, Kröger A, Binder M, Pichlmair A. NUDT2 initiates viral RNA degradation by removal of 5'-phosphates. Nature Communications. 12: 6918. PMID 34824277 DOI: 10.1038/s41467-021-27239-y   
2021 Sorber L, Claes B, Zwaenepoel K, Van Dorst B, De Winne K, Fransen E, Wener R, Lapperre T, Lardon F, Pauwels P. Evaluation of Cytologic Sample Preparations for Compatibility With Nucleic Acid Analysis. American Journal of Clinical Pathology. PMID 34542583 DOI: 10.1093/ajcp/aqab121   
2021 Erster O, Mendelson E, Levy V, Kabat A, Mannasse B, Asraf H, Azar R, Ali Y, Shirazi R, Bucris E, Bar-Ilan D, Mor O, Mandelboim M, Sofer D, Fleishon S, et al. Rapid and High-Throughput Reverse Transcriptase Quantitative PCR (RT-qPCR) Assay for Identification and Differentiation between SARS-CoV-2 Variants B.1.1.7 and B.1.351. Microbiology Spectrum. e0050621. PMID 34612692 DOI: 10.1128/Spectrum.00506-21   
2021 Ghimire S, Stewart CG, Thurman AL, Pezzulo AA. Performance of a scalable RNA extraction-free transcriptome profiling method for adherent cultured human cells. Scientific Reports. 11: 19438. PMID 34593905 DOI: 10.1038/s41598-021-98912-x   
2021 Li X, Wang CY. From bulk, single-cell to spatial RNA sequencing. International Journal of Oral Science. 13: 36. PMID 34782601 DOI: 10.1038/s41368-021-00146-0   
2021 Feng X, Yang S, Zhang Y, Zhiyuan C, Tang K, Li G, Yu H, Leng J, Wang Q. , Encoding a Pentatricopeptide Repeat Protein, Is Essential for Chloroplast RNA Editing and Biogenesis in Soybean. Frontiers in Plant Science. 12: 690973. PMID 34567023 DOI: 10.3389/fpls.2021.690973   
2021 Lackey L, Coria A, Ghosh AJ, Grayeski P, Hatfield L, Shankar V, Platig J, Xu Z, Ramos SBV, Silverman EK, Ortega VE, Cho MH, Hersh CP, Hobbs BD, Castaldi P, et al. Alternative poly-adenylation modulates α1-antitrypsin expression in chronic obstructive pulmonary disease. Plos Genetics. 17: e1009912. PMID 34784346 DOI: 10.1371/journal.pgen.1009912   
2021 Dumetz F, Chow EY, Harris LM, Liew SW, Jensen A, Umar MI, Chung B, Chan TF, Merrick CJ, Kwok CK. G-quadruplex RNA motifs influence gene expression in the malaria parasite Plasmodium falciparum. Nucleic Acids Research. PMID 34792144 DOI: 10.1093/nar/gkab1095   
2021 Aubets E, Chillon M, Ciudad CJ, Noé V. PolyPurine Reverse Hoogsteen Hairpins Work as RNA Species for Gene Silencing. International Journal of Molecular Sciences. 22. PMID 34576188 DOI: 10.3390/ijms221810025   
2021 Plongthongkum N, Diep D, Chen S, Lake BB, Zhang K. Scalable dual-omics profiling with single-nucleus chromatin accessibility and mRNA expression sequencing 2 (SNARE-seq2). Nature Protocols. 16: 4992-5029. PMID 34650278 DOI: 10.1038/s41596-021-00507-3   
2021 Rapisarda A, Bargiela A, Llamusi B, Pont I, Estrada-Tejedor R, Garcia-España E, Artero R, Perez-Alonso M. Defined D-hexapeptides bind CUG repeats and rescue phenotypes of myotonic dystrophy myotubes in a Drosophila model of the disease. Scientific Reports. 11: 19417. PMID 34593893 DOI: 10.1038/s41598-021-98866-0   
2021 Alharbi A, Iyer N, Al Qaryoute A, Raman R, Burks DJ, Azad RK, Jagadeeswaran P. Role of ribosomal RNA released from red cells in blood coagulation in zebrafish and humans. Blood Advances. 5: 4634-4647. PMID 34547768 DOI: 10.1182/bloodadvances.2020003325   
2021 Sun L, McNulty SN, Evenson MJ, Zhu X, Robinson J, Mann PR, Duncavage EJ, Pfeifer JD. Clinical Implications of a Targeted RNA-Sequencing Panel in the Detection of Gene Fusions in Solid Tumors. The Journal of Molecular Diagnostics : Jmd. PMID 34562614 DOI: 10.1016/j.jmoldx.2021.08.009   
2021 Fang Y, Changavi A, Yang M, Sun L, Zhang A, Sun D, Sun Z, Zhang B, Xu MQ. Nanopore Whole Transcriptome Analysis and Pathogen Surveillance by a Novel Solid-Phase Catalysis Approach. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2103373. PMID 34837482 DOI: 10.1002/advs.202103373   
2021 Chauhan A, Avti PK, Shekhar N, Prajapat M, Sarma P, Sangwan N, Singh J, Bhattacharyya A, Kumar S, Kaur H, Sharma S, Prakash A, Medhi B. An insight into the simulation directed understanding of the mechanism in SARS CoV-2 N-CTD, dimer integrity, and RNA-binding: Identifying potential antiviral inhibitors. Journal of Biomolecular Structure & Dynamics. 1-13. PMID 34751101 DOI: 10.1080/07391102.2021.1996463   
2021 Tian T, Qiu Z, Jiang Y, Zhu D, Zhou X. Exploiting the orthogonal CRISPR-Cas12a/Cas13a trans-cleavage for dual-gene virus detection using a handheld device. Biosensors & Bioelectronics. 196: 113701. PMID 34653714 DOI: 10.1016/j.bios.2021.113701   
2021 Pavlova AS, Yakovleva KI, Epanchitseva AV, Kupryushkin MS, Pyshnaya IA, Pyshnyi DV, Ryabchikova EI, Dovydenko IS. An Influence of Modification with Phosphoryl Guanidine Combined with a 2'-O-Methyl or 2'-Fluoro Group on the Small-Interfering-RNA Effect. International Journal of Molecular Sciences. 22. PMID 34575949 DOI: 10.3390/ijms22189784   
2021 Roden CA, Gladfelter AS. Design considerations for analyzing protein translation regulation by condensates. Rna (New York, N.Y.). PMID 34670845 DOI: 10.1261/rna.079002.121   
2021 Zhang C, Yang L, Zhao G, Wang J, Pan J, Xie T. LncRNA LINC01518 induced by GATA3 promotes cell proliferation, migration and invasion via miR-206/PRKACB in neuroblastoma. Journal of Neurophysiology. PMID 34705582 DOI: 10.1152/jn.00035.2021   
2021 Malone B, Campbell EA, Darst SA. CoV-er all the bases: Structural perspectives of SARS-CoV-2 RNA synthesis. The Enzymes. 49: 1-37. PMID 34696829 DOI: 10.1016/bs.enz.2021.06.004   
2021 Wen C, Wan X, Zhang Y, Du H, Wei C, Zhong R, Zhang H, Shi Y, Xie J, Fu Y, Zhao Y. Molecular Characterization of the First Alternavirus Identified in . Viruses. 13. PMID 34696456 DOI: 10.3390/v13102026