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Antoine M. van Oijen, PhD - Publications

Affiliations: 
2004-2010 Biological Chemistry and Molecular Pharmacology Harvard Medical School, Boston, MA, United States 
 2010-2014 Zernike Institute for Advanced Materials University of Groningen, Groningen, Netherlands 
 2014- Molecular Horizons University of Wollongong, Keiraville, New South Wales, Australia 
Area:
Molecular microscopy and spectroscopy
Website:
https://scholars.uow.edu.au/display/antoine_van_oijen
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108 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Henrikus SS, Henry C, McGrath AE, Jergic S, McDonald JP, Hellmich Y, Bruckbauer ST, Ritger ML, Cherry ME, Wood EA, Pham PT, Goodman MF, Woodgate R, Cox MM, van Oijen AM, et al. Single-molecule live-cell imaging reveals RecB-dependent function of DNA polymerase IV in double strand break repair. Nucleic Acids Research. PMID 32687193 DOI: 10.1093/nar/gkaa597  0.48
2020 Monachino E, Jergic S, Lewis JS, Xu ZQ, Lo ATY, O'Shea VL, Berger JM, Dixon NE, van Oijen AM. A Primase-Induced Conformational Switch Controls the Stability of the Bacterial Replisome. Molecular Cell. PMID 32464091 DOI: 10.1016/j.molcel.2020.04.037  0.48
2020 Dubiel K, Henry C, Spenkelink LM, Kozlov AG, Wood EA, Jergic S, Dixon NE, van Oijen AM, Cox MM, Lohman TM, Sandler SJ, Keck JL. Development of a single-stranded DNA-binding protein fluorescent fusion toolbox. Nucleic Acids Research. PMID 32374866 DOI: 10.1093/nar/gkaa320  0.48
2019 Whinn KS, Kaur G, Lewis JS, Schauer GD, Mueller SH, Jergic S, Maynard H, Gan ZY, Naganbabu M, Bruchez MP, O'Donnell ME, Dixon NE, van Oijen AM, Ghodke H. Nuclease dead Cas9 is a programmable roadblock for DNA replication. Scientific Reports. 9: 13292. PMID 31527759 DOI: 10.1038/s41598-019-49837-z  0.48
2019 Ho HN, Zalami D, Köhler J, van Oijen AM, Ghodke H. Identification of Multiple Kinetic Populations of DNA-Binding Proteins in Live Cells. Biophysical Journal. PMID 31383358 DOI: 10.1016/j.bpj.2019.07.015  0.76
2019 Spenkelink LM, Lewis JS, Jergic S, Xu ZQ, Robinson A, Dixon NE, van Oijen AM. Recycling of single-stranded DNA-binding protein by the bacterial replisome. Nucleic Acids Research. PMID 30767010 DOI: 10.1093/nar/gkz090  0.48
2019 Ghodke H, Paudel BP, Lewis JS, Jergic S, Gopal K, Romero ZJ, Wood EA, Woodgate R, Cox MM, van Oijen AM. Spatial and temporal organization of RecA in the DNA-damage response. Elife. 8. PMID 30717823 DOI: 10.7554/eLife.42761  0.48
2018 van Oijen AM, Duderstadt KE, Xiao J, Fishel R. Special Issue on Plasticity of Multi-Protein Complexes. Journal of Molecular Biology. PMID 30102893 DOI: 10.1016/j.jmb.2018.08.008  0.4
2018 Monachino E, Ghodke H, Spinks RR, Hoatson BS, Jergic S, Xu ZQ, Dixon NE, van Oijen AM. Design of DNA rolling-circle templates with controlled fork topology to study mechanisms of DNA replication. Analytical Biochemistry. PMID 30016625 DOI: 10.1016/j.ab.2018.07.008  0.48
2018 Hill FR, van Oijen AM, Duderstadt KE. Detection of kinetic change points in piece-wise linear single molecule motion. The Journal of Chemical Physics. 148: 123317. PMID 29604840 DOI: 10.1063/1.5009387  0.4
2017 Lewis JS, Spenkelink LM, Jergic S, Wood EA, Monachino E, Horan NP, Duderstadt KE, Cox MM, Robinson A, Dixon NE, van Oijen AM. Single-molecule visualization of fast polymerase turnover in the bacterial replisome. Elife. 6. PMID 28432790 DOI: 10.7554/eLife.23932  0.48
2016 Kim IS, Jenni S, Stanifer ML, Roth E, Whelan SP, van Oijen AM, Harrison SC. Mechanism of membrane fusion induced by vesicular stomatitis virus G protein. Proceedings of the National Academy of Sciences of the United States of America. PMID 27974607 DOI: 10.1073/pnas.1618883114  0.6
2016 Duderstadt KE, Geertsema HJ, Stratmann SA, Punter CM, Kulczyk AW, Richardson CC, van Oijen AM. Simultaneous Real-Time Imaging of Leading and Lagging Strand Synthesis Reveals the Coordination Dynamics of Single Replisomes. Molecular Cell. PMID 27889453 DOI: 10.1016/j.molcel.2016.10.028  0.72
2016 Goudsmits JM, van Oijen AM, Robinson A. A Tool for Alignment and Averaging of Sparse Fluorescence Signals in Rod-Shaped Bacteria. Biophysical Journal. 110: 1708-15. PMID 27119631 DOI: 10.1016/j.bpj.2016.02.039  1
2016 Åberg C, Duderstadt KE, van Oijen AM. Stability versus exchange: a paradox in DNA replication. Nucleic Acids Research. PMID 27112565 DOI: 10.1093/nar/gkw296  0.4
2016 Turkin A, Zhang L, Marcozzi A, Mangel WF, Herrmann A, van Oijen AM. Speeding up biomolecular interactions by molecular sledding. Chemical Science (Royal Society of Chemistry : 2010). 7: 916-920. PMID 26913169 DOI: 10.1039/C5SC03063C  1
2015 Turkin A, van Oijen AM, Turkin AA. Theory of bimolecular reactions in a solution with linear traps: Application to the problem of target search on DNA. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 92: 052703. PMID 26651719 DOI: 10.1103/PhysRevE.92.052703  1
2015 van Oijen AM, Dixon NE. Probing molecular choreography through single-molecule biochemistry. Nature Structural & Molecular Biology. 22: 948-52. PMID 26643847 DOI: 10.1038/nsmb.3119  1
2015 Caldas VE, Punter CM, Ghodke H, Robinson A, van Oijen AM. iSBatch: a batch-processing platform for data analysis and exploration of live-cell single-molecule microscopy images and other hierarchical datasets. Molecular Biosystems. 11: 2699-708. PMID 26198886 DOI: 10.1039/c5mb00321k  1
2015 Geertsema HJ, Duderstadt KE, van Oijen AM. Single-molecule observation of prokaryotic DNA replication. Methods in Molecular Biology (Clifton, N.J.). 1300: 219-38. PMID 25916715 DOI: 10.1007/978-1-4939-2596-4_14  1
2015 van Duijl-Richter M, Blijleven J, van Oijen A, Smit J. Chikungunya virus fusion properties elucidated by single-particle and bulk approaches. The Journal of General Virology. PMID 25872739 DOI: 10.1099/vir.0.000144  1
2015 Geertsema HJ, Schulte AC, Spenkelink LM, McGrath WJ, Morrone SR, Sohn J, Mangel WF, Robinson A, van Oijen AM. Single-molecule imaging at high fluorophore concentrations by local activation of dye. Biophysical Journal. 108: 949-56. PMID 25692599 DOI: 10.1016/j.bpj.2014.12.019  1
2015 Mashaghi S, Van Oijen AM. External control of reactions in microdroplets Scientific Reports. 5. DOI: 10.1038/srep11837  1
2014 Otterstrom JJ, Brandenburg B, Koldijk MH, Juraszek J, Tang C, Mashaghi S, Kwaks T, Goudsmit J, Vogels R, Friesen RH, van Oijen AM. Relating influenza virus membrane fusion kinetics to stoichiometry of neutralizing antibodies at the single-particle level. Proceedings of the National Academy of Sciences of the United States of America. 111: E5143-8. PMID 25404330 DOI: 10.1073/pnas.1411755111  1
2014 Graham TG, Wang X, Song D, Etson CM, van Oijen AM, Rudner DZ, Loparo JJ. ParB spreading requires DNA bridging. Genes & Development. 28: 1228-38. PMID 24829297 DOI: 10.1101/gad.242206.114  1
2014 Mashaghi S, van Oijen AM. A versatile approach to the generation of fluid supported lipid bilayers and its applications. Biotechnology and Bioengineering. 111: 2076-81. PMID 24771312 DOI: 10.1002/bit.25273  1
2014 Kusters I, van Oijen AM, Driessen AJ. Membrane-on-a-chip: microstructured silicon/silicon-dioxide chips for high-throughput screening of membrane transport and viral membrane fusion. Acs Nano. 8: 3380-92. PMID 24601516 DOI: 10.1021/nn405884a  1
2014 Geertsema HJ, Kulczyk AW, Richardson CC, van Oijen AM. Single-molecule studies of polymerase dynamics and stoichiometry at the bacteriophage T7 replication machinery. Proceedings of the National Academy of Sciences of the United States of America. 111: 4073-8. PMID 24591606 DOI: 10.1073/pnas.1402010111  1
2014 Stratmann SA, van Oijen AM. DNA replication at the single-molecule level. Chemical Society Reviews. 43: 1201-20. PMID 24395040 DOI: 10.1039/c3cs60391a  1
2014 Duderstadt KE, Reyes-Lamothe R, van Oijen AM, Sherratt DJ. Replication-fork dynamics. Cold Spring Harbor Perspectives in Biology. 6. PMID 23881939 DOI: 10.1101/cshperspect.a010157  1
2013 Brandenburg B, Koudstaal W, Goudsmit J, Klaren V, Tang C, Bujny MV, Korse HJ, Kwaks T, Otterstrom JJ, Juraszek J, van Oijen AM, Vogels R, Friesen RH. Mechanisms of hemagglutinin targeted influenza virus neutralization. Plos One. 8: e80034. PMID 24348996 DOI: 10.1371/journal.pone.0080034  1
2013 Erkens GB, Hänelt I, Goudsmits JM, Slotboom DJ, van Oijen AM. Unsynchronised subunit motion in single trimeric sodium-coupled aspartate transporters. Nature. 502: 119-23. PMID 24091978 DOI: 10.1038/nature12538  1
2013 Geertsema HJ, van Oijen AM. A single-molecule view of DNA replication: the dynamic nature of multi-protein complexes revealed. Current Opinion in Structural Biology. 23: 788-93. PMID 23890728 DOI: 10.1016/j.sbi.2013.06.018  1
2013 Ivanovic T, Choi JL, Whelan SP, van Oijen AM, Harrison SC. Influenza-virus membrane fusion by cooperative fold-back of stochastically induced hemagglutinin intermediates. Elife. 2: e00333. PMID 23550179 DOI: 10.7554/eLife.00333  1
2013 Robinson A, van Oijen AM. Bacterial replication, transcription and translation: mechanistic insights from single-molecule biochemical studies. Nature Reviews. Microbiology. 11: 303-15. PMID 23549067 DOI: 10.1038/nrmicro2994  1
2013 Jergic S, Horan NP, Elshenawy MM, Mason CE, Urathamakul T, Ozawa K, Robinson A, Goudsmits JM, Wang Y, Pan X, Beck JL, van Oijen AM, Huber T, Hamdan SM, Dixon NE. A direct proofreader-clamp interaction stabilizes the Pol III replicase in the polymerization mode. The Embo Journal. 32: 1322-33. PMID 23435564 DOI: 10.1038/emboj.2012.347  1
2013 Otterstrom J, van Oijen AM. Visualization of membrane fusion, one particle at a time. Biochemistry. 52: 1654-68. PMID 23421412 DOI: 10.1021/bi301573w  1
2013 Mashaghi S, Van Oijen AM. Towards a high-throughput, droplet-based viral-fusion assay with single-particle sensitivity 17th International Conference On Miniaturized Systems For Chemistry and Life Sciences, Microtas 2013. 3: 1788-1790.  1
2013 Van Oijen AM. Biology at the nanoscale, one molecule at a time 17th International Conference On Miniaturized Systems For Chemistry and Life Sciences, Microtas 2013. 1: 1.  1
2012 Yardimci H, Wang X, Loveland AB, Tappin I, Rudner DZ, Hurwitz J, van Oijen AM, Walter JC. Bypass of a protein barrier by a replicative DNA helicase. Nature. 492: 205-9. PMID 23201686 DOI: 10.1038/nature11730  1
2012 Quessada-Vial A, van Oijen AM. How DNA-repair proteins find their targets. Proceedings of the National Academy of Sciences of the United States of America. 109: 18243-4. PMID 23112194 DOI: 10.1073/pnas.1215845109  1
2012 Leith JS, Tafvizi A, Huang F, Uspal WE, Doyle PS, Fersht AR, Mirny LA, van Oijen AM. Sequence-dependent sliding kinetics of p53. Proceedings of the National Academy of Sciences of the United States of America. 109: 16552-7. PMID 23012405 DOI: 10.1073/pnas.1120452109  1
2012 Loveland AB, Habuchi S, Walter JC, van Oijen AM. A general approach to break the concentration barrier in single-molecule imaging. Nature Methods. 9: 987-92. PMID 22961247 DOI: 10.1038/nmeth.2174  1
2012 Quessada-Vial A, van Oijen AM. Spotting the mistakes, one molecule at a time. Structure (London, England : 1993). 20: 1130-2. PMID 22770368 DOI: 10.1016/j.str.2012.06.007  1
2012 Yardimci H, Loveland AB, van Oijen AM, Walter JC. Single-molecule analysis of DNA replication in Xenopus egg extracts. Methods (San Diego, Calif.). 57: 179-86. PMID 22503776 DOI: 10.1016/j.ymeth.2012.03.033  1
2012 Ivanovic T, Rozendaal R, Floyd DL, Popovic M, van Oijen AM, Harrison SC. Kinetics of proton transport into influenza virions by the viral M2 channel. Plos One. 7: e31566. PMID 22412838 DOI: 10.1371/journal.pone.0031566  1
2011 Fu YV, Yardimci H, Long DT, Ho TV, Guainazzi A, Bermudez VP, Hurwitz J, van Oijen A, Schärer OD, Walter JC. Selective bypass of a lagging strand roadblock by the eukaryotic replicative DNA helicase. Cell. 146: 931-41. PMID 21925316 DOI: 10.1016/j.cell.2011.07.045  1
2011 Satapathy AK, Kulczyk AW, Ghosh S, van Oijen AM, Richardson CC. Coupling dTTP hydrolysis with DNA unwinding by the DNA helicase of bacteriophage T7. The Journal of Biological Chemistry. 286: 34468-78. PMID 21840995 DOI: 10.1074/jbc.M111.283796  1
2011 Akabayov B, Kulczyk AW, Akabayov SR, Theile C, McLaughlin LW, Beauchamp B, van Oijen AM, Richardson CC. Pyrovanadolysis, a pyrophosphorolysis-like reaction mediated by pyrovanadate, Mn2+, and DNA polymerase of bacteriophage T7. The Journal of Biological Chemistry. 286: 29146-57. PMID 21697085 DOI: 10.1074/jbc.M111.250944  1
2011 Tafvizi A, Mirny LA, van Oijen AM. Dancing on DNA: kinetic aspects of search processes on DNA. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 12: 1481-9. PMID 21560221 DOI: 10.1002/cphc.201100112  1
2011 Tanner NA, Tolun G, Loparo JJ, Jergic S, Griffith JD, Dixon NE, van Oijen AM. E. coli DNA replication in the absence of free β clamps. The Embo Journal. 30: 1830-40. PMID 21441898 DOI: 10.1038/emboj.2011.84  1
2011 Loparo JJ, Kulczyk AW, Richardson CC, van Oijen AM. Simultaneous single-molecule measurements of phage T7 replisome composition and function reveal the mechanism of polymerase exchange. Proceedings of the National Academy of Sciences of the United States of America. 108: 3584-9. PMID 21245349 DOI: 10.1073/pnas.1018824108  1
2011 Tafvizi A, Huang F, Fersht AR, Mirny LA, van Oijen AM. A single-molecule characterization of p53 search on DNA. Proceedings of the National Academy of Sciences of the United States of America. 108: 563-8. PMID 21178072 DOI: 10.1073/pnas.1016020107  1
2011 van Oijen AM. Single-molecule approaches to characterizing kinetics of biomolecular interactions. Current Opinion in Biotechnology. 22: 75-80. PMID 21036593 DOI: 10.1016/j.copbio.2010.10.002  1
2011 Lebofsky R, van Oijen AM, Walter JC. DNA is a co-factor for its own replication in Xenopus egg extracts. Nucleic Acids Research. 39: 545-55. PMID 20861001 DOI: 10.1093/nar/gkq739  1
2011 Williams K, Grafe B, Burke KM, Tanner N, Van Oijen AM, Loparo J, Price AC. A single molecule DNA flow stretching microscope for undergraduates American Journal of Physics. 79: 1112-1120. DOI: 10.1119/1.3620410  1
2011 Salentijn GI, Van Dijk M, Geertsema HJ, Jellema LJC, Van Oijen AM, Verpoorte E. DNA purification in continuous nanoliter flows using flowinduced electrokinetic trapping: Influence of ionic strength and chip conditioning 15th International Conference On Miniaturized Systems For Chemistry and Life Sciences 2011, Microtas 2011. 2: 987-989.  1
2010 Yardimci H, Loveland AB, Habuchi S, van Oijen AM, Walter JC. Uncoupling of sister replisomes during eukaryotic DNA replication. Molecular Cell. 40: 834-40. PMID 21145490 DOI: 10.1016/j.molcel.2010.11.027  1
2010 Elenko MP, Szostak JW, van Oijen AM. Single-molecule binding experiments on long time scales. The Review of Scientific Instruments. 81: 083705. PMID 20815611 DOI: 10.1063/1.3473936  1
2010 Al-Bassam J, Kim H, Brouhard G, van Oijen A, Harrison SC, Chang F. CLASP promotes microtubule rescue by recruiting tubulin dimers to the microtubule. Developmental Cell. 19: 245-58. PMID 20708587 DOI: 10.1016/j.devcel.2010.07.016  1
2010 Floyd DL, Harrison SC, van Oijen AM. Analysis of kinetic intermediates in single-particle dwell-time distributions. Biophysical Journal. 99: 360-6. PMID 20643053 DOI: 10.1016/j.bpj.2010.04.049  1
2010 Tanner NA, van Oijen AM. Visualizing DNA replication at the single-molecule level. Methods in Enzymology. 475: 259-78. PMID 20627161 DOI: 10.1016/S0076-6879(10)75011-4  1
2010 van Oijen AM, Loparo JJ. Single-molecule studies of the replisome. Annual Review of Biophysics. 39: 429-48. PMID 20462378 DOI: 10.1146/annurev.biophys.093008.131327  1
2010 Hamdan SM, van Oijen AM. Timing, coordination, and rhythm: acrobatics at the DNA replication fork. The Journal of Biological Chemistry. 285: 18979-83. PMID 20382733 DOI: 10.1074/jbc.R109.022939  1
2010 Satapathy AK, Kochaniak AB, Mukherjee S, Crampton DJ, van Oijen A, Richardson CC. Residues in the central beta-hairpin of the DNA helicase of bacteriophage T7 are important in DNA unwinding. Proceedings of the National Academy of Sciences of the United States of America. 107: 6782-7. PMID 20351255 DOI: 10.1073/pnas.1002734107  1
2010 Kulczyk AW, Tanner NA, Loparo JJ, Richardson CC, van Oijen AM. Direct observation of enzymes replicating DNA using a single-molecule DNA stretching assay. Journal of Visualized Experiments : Jove. PMID 20332766 DOI: 10.3791/1689  1
2010 Etson CM, Hamdan SM, Richardson CC, van Oijen AM. Thioredoxin suppresses microscopic hopping of T7 DNA polymerase on duplex DNA. Proceedings of the National Academy of Sciences of the United States of America. 107: 1900-5. PMID 20080681 DOI: 10.1073/pnas.0912664107  1
2010 Floyd DL, Otterstrom JJ, Skehel JJ, Harrison SC, Van Oijen AM. Visualizing viral fusion at the single-particle level in microchannels 14th International Conference On Miniaturized Systems For Chemistry and Life Sciences 2010, Microtas 2010. 2: 1412-1414.  1
2009 Tanner NA, Loparo JJ, van Oijen AM. Visualizing Single-molecule DNA Replication with Fluorescence Microscopy. Journal of Visualized Experiments : Jove. PMID 19820685 DOI: 10.3791/1529  1
2009 Floyd DL, Harrison SC, van Oijen AM. Method for measurement of viral fusion kinetics at the single particle level. Journal of Visualized Experiments : Jove. PMID 19736545 DOI: 10.3791/1484  1
2009 Otterstrom JJ, van Oijen AM. Biochemistry. Nudging through a nucleosome. Science (New York, N.Y.). 325: 547-8. PMID 19644099 DOI: 10.1126/science.1177311  1
2009 Elenko MP, Szostak JW, van Oijen AM. Single-molecule imaging of an in vitro-evolved RNA aptamer reveals homogeneous ligand binding kinetics. Journal of the American Chemical Society. 131: 9866-7. PMID 19572753 DOI: 10.1021/ja901880v  1
2009 Tanner NA, van Oijen AM. Single-molecule observation of prokaryotic DNA replication. Methods in Molecular Biology (Clifton, N.J.). 521: 397-410. PMID 19563119 DOI: 10.1007/978-1-60327-815-7_22  1
2009 Kochaniak AB, Habuchi S, Loparo JJ, Chang DJ, Cimprich KA, Walter JC, van Oijen AM. Proliferating cell nuclear antigen uses two distinct modes to move along DNA. The Journal of Biological Chemistry. 284: 17700-10. PMID 19411704 DOI: 10.1074/jbc.M109.008706  1
2009 Tanner NA, Loparo JJ, Hamdan SM, Jergic S, Dixon NE, van Oijen AM. Real-time single-molecule observation of rolling-circle DNA replication. Nucleic Acids Research. 37: e27. PMID 19155275 DOI: 10.1093/nar/gkp006  1
2009 Hamdan SM, Loparo JJ, Takahashi M, Richardson CC, van Oijen AM. Dynamics of DNA replication loops reveal temporal control of lagging-strand synthesis. Nature. 457: 336-9. PMID 19029884 DOI: 10.1038/nature07512  1
2008 Habuchi S, Tsutsui H, Kochaniak AB, Miyawaki A, van Oijen AM. mKikGR, a monomeric photoswitchable fluorescent protein. Plos One. 3: e3944. PMID 19079591 DOI: 10.1371/journal.pone.0003944  1
2008 Floyd DL, Ragains JR, Skehel JJ, Harrison SC, van Oijen AM. Single-particle kinetics of influenza virus membrane fusion. Proceedings of the National Academy of Sciences of the United States of America. 105: 15382-7. PMID 18829437 DOI: 10.1073/pnas.0807771105  1
2008 Tanner NA, Hamdan SM, Jergic S, Loscha KV, Schaeffer PM, Dixon NE, van Oijen AM. Single-molecule studies of fork dynamics in Escherichia coli DNA replication. Nature Structural & Molecular Biology. 15: 998. PMID 18769472 DOI: 10.1038/nsmb0908-998a  1
2008 Komazin-Meredith G, Mirchev R, Golan DE, van Oijen AM, Coen DM. Hopping of a processivity factor on DNA revealed by single-molecule assays of diffusion. Proceedings of the National Academy of Sciences of the United States of America. 105: 10721-6. PMID 18658237 DOI: 10.1073/pnas.0802676105  1
2008 van Oijen AM. Cutting the forest to see a single tree? Nature Chemical Biology. 4: 440-3. PMID 18641617 DOI: 10.1038/nchembio0808-440  1
2008 Tafvizi A, Huang F, Leith JS, Fersht AR, Mirny LA, van Oijen AM. Tumor suppressor p53 slides on DNA with low friction and high stability. Biophysical Journal. 95: L01-3. PMID 18424488 DOI: 10.1529/biophysj.108.134122  1
2008 Tanner NA, Hamdan SM, Jergic S, Loscha KV, Schaeffer PM, Dixon NE, van Oijen AM. Single-molecule studies of fork dynamics in Escherichia coli DNA replication. Nature Structural & Molecular Biology. 15: 170-6. PMID 18223657 DOI: 10.1038/nsmb.1381  1
2008 Van Oijen A. A singular focus Scientist. 22: 51-55.  1
2007 Hamdan SM, Johnson DE, Tanner NA, Lee JB, Qimron U, Tabor S, van Oijen AM, Richardson CC. Dynamic DNA helicase-DNA polymerase interactions assure processive replication fork movement. Molecular Cell. 27: 539-49. PMID 17707227 DOI: 10.1016/j.molcel.2007.06.020  1
2007 van Oijen AM. Single-molecule studies of complex systems: the replisome. Molecular Biosystems. 3: 117-25. PMID 17245491 DOI: 10.1039/b612545j  1
2007 van Oijen AM. Honey, I shrunk the DNA: DNA length as a probe for nucleic-acid enzyme activity. Biopolymers. 85: 144-53. PMID 17083118 DOI: 10.1002/bip.20624  1
2007 Fujiyoshi S, Fujiwara M, Kim C, Matsushita M, Van Oijen AM, Schmidt J. Single-component reflecting objective for low-temperature spectroscopy in the entire visible region Applied Physics Letters. 91. DOI: 10.1063/1.2767778  1
2006 Blainey PC, van Oijen AM, Banerjee A, Verdine GL, Xie XS. A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA. Proceedings of the National Academy of Sciences of the United States of America. 103: 5752-7. PMID 16585517 DOI: 10.1073/pnas.0509723103  1
2006 Lee JB, Hite RK, Hamdan SM, Xie XS, Richardson CC, van Oijen AM. DNA primase acts as a molecular brake in DNA replication. Nature. 439: 621-4. PMID 16452983 DOI: 10.1038/nature04317  1
2006 English BP, Min W, van Oijen AM, Lee KT, Luo G, Sun H, Cherayil BJ, Kou SC, Xie XS. Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited. Nature Chemical Biology. 2: 87-94. PMID 16415859 DOI: 10.1038/nchembio759  1
2005 Kirchhausen T, Boll W, van Oijen A, Ehrlich M. Single-molecule live-cell imaging of clathrin-based endocytosis. Biochemical Society Symposium. 71-6. PMID 15649131  1
2004 Ehrlich M, Boll W, Van Oijen A, Hariharan R, Chandran K, Nibert ML, Kirchhausen T. Endocytosis by random initiation and stabilization of clathrin-coated pits. Cell. 118: 591-605. PMID 15339664 DOI: 10.1016/j.cell.2004.08.017  1
2003 van Oijen AM, Blainey PC, Crampton DJ, Richardson CC, Ellenberger T, Xie XS. Single-molecule kinetics of lambda exonuclease reveal base dependence and dynamic disorder. Science (New York, N.Y.). 301: 1235-8. PMID 12947199 DOI: 10.1126/science.1084387  1
2002 Verberk R, Van Oijen AM, Orrit M. Simple model for the power-law blinking of single semiconductor nanocrystals Physical Review B - Condensed Matter and Materials Physics. 66: 2332021-2332024.  1
2001 Matsushita M, Ketelaars M, van Oijen AM, Köhler J, Aartsma TJ, Schmidt J. Spectroscopy on the B850 band of individual light-harvesting 2 complexes of Rhodopseudomonas acidophila. II. Exciton states of an elliptically deformed ring aggregate. Biophysical Journal. 80: 1604-14. PMID 11222321 DOI: 10.1016/S0006-3495(01)76133-4  1
2001 Ketelaars M, van Oijen AM, Matsushita M, Köhler J, Schmidt J, Aartsma TJ. Spectroscopy on the B850 band of individual light-harvesting 2 complexes of Rhodopseudomonas acidophila. I. Experiments and Monte Carlo simulations. Biophysical Journal. 80: 1591-603. PMID 11222320 DOI: 10.1016/S0006-3495(01)76132-2  1
2001 Van Oijen AM, Verberk R, Durand Y, Schmidt J, Van Lingen JNJ, Bol AA, Meijerink A. Continuous-wave two-photon excitation of individual CdS nanocrystallites Applied Physics Letters. 79: 830-832. DOI: 10.1063/1.1391231  1
2001 Köhler J, Van Oijen AM, Ketelaars M, Hofmann C, Matsushita M, Aartsma TJ, Schmidt J. Optical spectroscopy of individual photosynthetic pigment protein complexes International Journal of Modern Physics B. 15: 3633-3636.  1
2001 Van Oijen AM, Ketelaars M, Köhler J, Aartsma TJ, Schmidt J. The electronic structure of single photosynthetic pigment-protein complexes Springer Series in Chemical Physics. 67: 62-81.  1
2000 van Oijen AM, Ketelaars M, Köhler J, Aartsma TJ, Schmidt J. Spectroscopy of individual light-harvesting 2 complexes of Rhodopseudomonas acidophila: diagonal disorder, intercomplex heterogeneity, spectral diffusion, and energy transfer in the B800 band. Biophysical Journal. 78: 1570-7. PMID 10692341 DOI: 10.1016/S0006-3495(00)76709-9  1
2000 Durand Y, Bloeß A, Van Oijen AM, Köhler J, Groenen EJJ, Schmidt J. An optical study of single pentacene molecules in n-tetradecane Chemical Physics Letters. 317: 232-237.  1
1999 van Oijen AM, Ketelaars M, Kohler J, Aartsma TJ, Schmidt J. Unraveling the electronic structure of individual photosynthetic pigment-protein complexes Science (New York, N.Y.). 285: 400-2. PMID 10411501 DOI: 10.1126/science.285.5426.400  1
1999 Van Oijen AM, Ketelaars M, Köhler J, Aartsma TJ, Schmidt J. Spectroscopy of individual LH2 complexes of Rhodopseudomonas acidophila: Localized excitations in the B800 band Chemical Physics. 247: 53-60.  1
1999 Brouwer ACJ, Köhler J, Van Oijen AM, Groenen EJJ, Schmidt J. Single-molecule fluorescence autocorrelation experiments on pentacene: The dependence of intersystem crossing on isotopic composition Journal of Chemical Physics. 110: 9151-9159.  1
1999 Van Oijen AM, Köhler J, Schmidt J, Müller M, Brakenhoff GJ. Far-field fluorescence microscopy beyond the diffraction limit Journal of the Optical Society of America a: Optics and Image Science, and Vision. 16: 909-915.  1
1999 Brakenhoff GJ, van Oijen AM, Kohler J, Muller M, Schmidt J. Three-dimensional super-resolution imaging of single molecules by spectrally selective confocal microscopy Proceedings of Spie - the International Society For Optical Engineering. 3605: 82-89.  1
1998 Van Oijen AM, Köhler J, Schmidt J, Müller M, Brakenhoff GJ. 3-Dimensional super-resolution by spectrally selective imaging Chemical Physics Letters. 292: 183-187.  1
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