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Dan Nicolae - Publications

Affiliations: 
University of Chicago, Chicago, IL 
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Statistics
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35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Ober C, McKennan CG, Magnaye KM, Altman MC, Washington C, Stanhope C, Naughton KA, Rosasco MG, Bacharier LB, Billheimer D, Gold DR, Gress L, Hartert T, Havstad S, Khurana Hershey GK, ... ... Nicolae DL, et al. Expression quantitative trait locus fine mapping of the 17q12-21 asthma locus in African American children: a genetic association and gene expression study. The Lancet. Respiratory Medicine. 8: 482-492. PMID 32380068 DOI: 10.1016/S2213-2600(20)30011-4  0.353
2019 McKennan C, Nicolae D. Accounting for unobserved covariates with varying degrees of estimability in high-dimensional biological data. Biometrika. 106: 823-840. PMID 31754283 DOI: 10.1093/Biomet/Asz037  0.314
2018 Stein MM, Thompson EE, Schoettler N, Helling BA, Magnaye KM, Stanhope C, Igartua C, Morin A, Washington C, Nicolae D, Bønnelykke K, Ober C. A Decade of Research on the 17q12-21 Asthma Locus: Piecing Together the Puzzle. The Journal of Allergy and Clinical Immunology. PMID 29307657 DOI: 10.1016/J.Jaci.2017.12.974  0.37
2017 Im HK, Barbeira A, Zheng J, Torres J, Dickinson S, Wheeler H, Bell G, Nicolae D, Cox N. Generating A Database of Phenotypic Consequences of Gene Regulation Across 40 Human Tissues European Neuropsychopharmacology. 27. DOI: 10.1016/J.Euroneuro.2016.09.466  0.403
2016 Reimherr M, Nicolae D. Estimating Variance Components in Functional Linear Models With Applications to Genetic Heritability Journal of the American Statistical Association. 111: 407-422. DOI: 10.1080/01621459.2015.1016224  0.665
2015 Gamazon ER, Wheeler HE, Shah KP, Mozaffari SV, Aquino-Michaels K, Carroll RJ, Eyler AE, Denny JC, Nicolae DL, Cox NJ, Im HK. A gene-based association method for mapping traits using reference transcriptome data. Nature Genetics. 47: 1091-8. PMID 26258848 DOI: 10.1038/Ng.3367  0.325
2014 Sharma S, Zhou X, Thibault DM, Himes BE, Liu A, Szefler SJ, Strunk R, Castro M, Hansel NN, Diette GB, Vonakis BM, Adkinson NF, Avila L, Soto-Quiros M, Barraza-Villareal A, ... ... Nicolae D, et al. A genome-wide survey of CD4(+) lymphocyte regulatory genetic variants identifies novel asthma genes. The Journal of Allergy and Clinical Immunology. 134: 1153-62. PMID 24934276 DOI: 10.1016/J.Jaci.2014.04.011  0.412
2014 Ahsan H, Halpern J, Kibriya MG, Pierce BL, Tong L, Gamazon E, McGuire V, Felberg A, Shi J, Jasmine F, Roy S, Brutus R, Argos M, Melkonian S, Chang-Claude J, ... ... Nicolae D, et al. A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. 23: 658-69. PMID 24493630 DOI: 10.1158/1055-9965.Epi-13-0340  0.341
2014 Reimherr M, Nicolae D. A functional data analysis approach for genetic association studies Annals of Applied Statistics. 8: 406-429. DOI: 10.1214/13-Aoas692  0.674
2013 Noth I, Zhang Y, Ma SF, Flores C, Barber M, Huang Y, Broderick SM, Wade MS, Hysi P, Scuirba J, Richards TJ, Juan-Guardela BM, Vij R, Han MK, Martinez FJ, ... ... Nicolae D, et al. Genetic variants associated with idiopathic pulmonary fibrosis susceptibility and mortality: a genome-wide association study. The Lancet. Respiratory Medicine. 1: 309-17. PMID 24429156 DOI: 10.1016/S2213-2600(13)70045-6  0.344
2013 Blair DR, Lyttle CS, Mortensen JM, Bearden CF, Jensen AB, Khiabanian H, Melamed R, Rabadan R, Bernstam EV, Brunak S, Jensen LJ, Nicolae D, Shah NH, Grossman RL, Cox NJ, et al. A nondegenerate code of deleterious variants in Mendelian loci contributes to complex disease risk. Cell. 155: 70-80. PMID 24074861 DOI: 10.1016/J.Cell.2013.08.030  0.326
2013 Liu Q, Nicolae DL, Chen LS. Marbled inflation from population structure in gene-based association studies with rare variants. Genetic Epidemiology. 37: 286-92. PMID 23468125 DOI: 10.1002/Gepi.21714  0.302
2013 Reimherr M, Nicolae DL. On quantifying dependence: A framework for developing interpretable measures Statistical Science. 28: 116-130. DOI: 10.1214/12-Sts405  0.602
2012 Ostrovnaya I, Nicolae DL. Estimating the proportion of true null hypotheses under dependence Statistica Sinica. 22: 1689-1716. DOI: 10.5705/Ss.2010.255  0.492
2011 Perera MA, Gamazon E, Cavallari LH, Patel SR, Poindexter S, Kittles RA, Nicolae D, Cox NJ. The missing association: sequencing-based discovery of novel SNPs in VKORC1 and CYP2C9 that affect warfarin dose in African Americans. Clinical Pharmacology and Therapeutics. 89: 408-15. PMID 21270790 DOI: 10.1038/Clpt.2010.322  0.302
2011 Reimherr M, Nicolae DL. You've gotta be lucky: Coverage and the elusive gene-gene interaction. Annals of Human Genetics. 75: 105-11. PMID 20977438 DOI: 10.1111/J.1469-1809.2010.00615.X  0.652
2010 De la Cruz O, Wen X, Ke B, Song M, Nicolae DL. Gene, region and pathway level analyses in whole-genome studies. Genetic Epidemiology. 34: 222-31. PMID 20013942 DOI: 10.1002/Gepi.20452  0.654
2010 Thompson EE, Sun Y, Nicolae D, Ober C. Shades of gray: a comparison of linkage disequilibrium between Hutterites and Europeans. Genetic Epidemiology. 34: 133-9. PMID 19697328 DOI: 10.1002/Gepi.20442  0.348
2010 Song S, Nicolae DL, Song J. Estimating the mixing proportion in a semiparametric mixture model Computational Statistics and Data Analysis. 54: 2276-2283. DOI: 10.1016/J.Csda.2010.04.007  0.474
2009 Nicolae DL, Ober C. (Too) great expectations: the challenges in replicating asthma disease genes. American Journal of Respiratory and Critical Care Medicine. 179: 1078-9. PMID 19498061 DOI: 10.1164/rccm.200903-0456ED  0.339
2009 De la Cruz O, Blekhman R, Zhang X, Nicolae D, Firestein S, Gilad Y. A signature of evolutionary constraint on a subset of ectopically expressed olfactory receptor genes. Molecular Biology and Evolution. 26: 491-4. PMID 19103638 DOI: 10.1093/Molbev/Msn294  0.302
2009 Song M, Nicolae DL. Restricted parameter space models for testing gene-gene interaction. Genetic Epidemiology. 33: 386-93. PMID 19058263 DOI: 10.1002/Gepi.20392  0.563
2009 Song J, Nicolae DL. A sequential clustering algorithm with applications to gene expression data Journal of the Korean Statistical Society. 38: 175-184. DOI: 10.1016/J.Jkss.2008.09.006  0.522
2007 Thompson EE, Pan L, Ostrovnaya I, Weiss LA, Gern JE, Lemanske RF, Nicolae DL, Ober C. Integrin beta 3 genotype influences asthma and allergy phenotypes in the first 6 years of life. The Journal of Allergy and Clinical Immunology. 119: 1423-9. PMID 17556058 DOI: 10.1016/J.Jaci.2007.03.029  0.517
2007 Rioux J, Xavier R, Taylor K, Goyette P, Silverberg M, Huett A, Green T, Kuballa P, Barmada M, Datta L, Shugart YY, Jean Bernard E, Mei L, Nicolae D, Steinhart H, et al. Whole Genome Association Identifies Novel Susceptibility Genes for Crohn's Disease and Implicates a Crucial Role for Autophagy Clinical Immunology. 123: S172. DOI: 10.1016/J.Clim.2007.03.131  0.358
2006 Thompson E, Murray C, Burkart M, Nicolae D, Gilad Y, Ober C. Haplotype Structure and Natural Selection in an Olfactory Receptor (OR) Gene on Chromosome 6p Associated with Asthma Susceptibility Journal of Allergy and Clinical Immunology. 117: S149. DOI: 10.1016/J.Jaci.2005.12.595  0.34
2005 Hoffjan S, Nicolae D, Ostrovnaya I, Roberg K, Evans M, Mirel DB, Steiner L, Walker K, Shult P, Gangnon RE, Gern JE, Martinez FD, Lemanske RF, Ober C. Gene-environment interaction effects on the development of immune responses in the 1st year of life. American Journal of Human Genetics. 76: 696-704. PMID 15726497 DOI: 10.1086/429418  0.566
2005 Nicolae D, Cox NJ, Lester LA, Schneider D, Tan Z, Billstrand C, Kuldanek S, Donfack J, Kogut P, Patel NM, Goodenbour J, Howard T, Wolf R, Koppelman GH, White SR, et al. Fine mapping and positional candidate studies identify HLA-G as an asthma susceptibility gene on chromosome 6p21. American Journal of Human Genetics. 76: 349-57. PMID 15611928 DOI: 10.1086/427763  0.39
2004 Hoffjan S, Ostrovnaja I, Nicolae D, Newman DL, Nicolae R, Gangnon R, Steiner L, Walker K, Reynolds R, Greene D, Mirel D, Gern JE, Lemanske RF, Ober C. Genetic variation in immunoregulatory pathways and atopic phenotypes in infancy. The Journal of Allergy and Clinical Immunology. 113: 511-8. PMID 15007355 DOI: 10.1016/J.Jaci.2003.10.044  0.371
2003 Hoffjan S, Nicolae D, Ober C. Association studies for asthma and atopic diseases: a comprehensive review of the literature. Respiratory Research. 4: 14. PMID 14748924 DOI: 10.1186/1465-9921-4-14  0.375
2003 Brant SR, Panhuysen CI, Nicolae D, Reddy DM, Bonen DK, Karaliukas R, Zhang L, Swanson E, Datta LW, Moran T, Ravenhill G, Duerr RH, Achkar JP, Karban AS, Cho JH. MDR1 Ala893 polymorphism is associated with inflammatory bowel disease. American Journal of Human Genetics. 73: 1282-92. PMID 14610718 DOI: 10.1086/379927  0.347
2003 Regunathan A, Glesne DA, Wilson AK, Song J, Nicolae D, Flores T, Bhattacharyya MH. Microarray analysis of changes in bone cell gene expression early after cadmium gavage in mice. Toxicology and Applied Pharmacology. 191: 272-93. PMID 13678660 DOI: 10.1016/S0041-008X(03)00163-7  0.508
2003 Colilla S, Nicolae D, Pluzhnikov A, Blumenthal MN, Beaty TH, Bleecker ER, Lange EM, Rich SS, Meyers DA, Ober C, Cox NJ. Evidence for gene-environment interactions in a linkage study of asthma and smoking exposure. The Journal of Allergy and Clinical Immunology. 111: 840-6. PMID 12704367 DOI: 10.1067/Mai.2003.170  0.37
2002 Gu Z, Nicolae D, Lu HH, Li WH. Rapid divergence in expression between duplicate genes inferred from microarray data. Trends in Genetics : Tig. 18: 609-13. PMID 12446139 DOI: 10.1016/S0168-9525(02)02837-8  0.309
2000 Cho JH, Nicolae D, Brant SR, Pavli P, Gorska M, Bryce M, Stanford P, Kirschner BS, Quak E, Bayless TM, Hanauer SB, Cavanaugh JA. Understanding gene-gene interactions in IBD: Disease genes on chromosomes 1 and 16 interact to induce disease susceptmility Gastroenterology. 118: A709. DOI: 10.1016/S0016-5085(00)84966-5  0.318
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