| Year |
Citation |
Score |
| 2019 |
Rivas-Marin E, Stettner S, Gottshall EY, Santana-Molina C, Helling M, Basile F, Ward NL, Devos DP. Essentiality of sterol synthesis genes in the planctomycete bacterium Gemmata obscuriglobus. Nature Communications. 10: 2916. PMID 31266954 DOI: 10.1038/S41467-019-10983-7 |
0.406 |
|
| 2015 |
Kamneva OK, Poudel S, Ward NL. Proteins Related to the Type I Secretion System Are Associated with Secondary SecA_DEAD Domain Proteins in Some Species of Planctomycetes, Verrucomicrobia, Proteobacteria, Nitrospirae and Chlorobi. Plos One. 10: e0129066. PMID 26030905 DOI: 10.1371/Journal.Pone.0129066 |
0.737 |
|
| 2015 |
Bhatnagar S, Badger JH, Madupu R, Khouri HM, O'Connor EM, Robb FT, Ward NL, Eisen JA. Genome Sequence of a Sulfate-Reducing Thermophilic Bacterium, Thermodesulfobacterium commune DSM 2178T (Phylum Thermodesulfobacteria). Genome Announcements. 3. PMID 25635017 DOI: 10.1128/Genomea.01490-14 |
0.423 |
|
| 2015 |
Bhatnagar S, Badger JH, Madupu R, Khouri HM, O'Connor EM, Robb FT, Ward NL, Eisen JA. Genome Sequence of the Sulfate-Reducing Thermophilic Bacterium Thermodesulfovibrio yellowstonii Strain DSM 11347T (Phylum Nitrospirae). Genome Announcements. 3. PMID 25635016 DOI: 10.1128/Genomea.01489-14 |
0.412 |
|
| 2015 |
Kamneva OK, Poudel S, Ward NL. Proteins related to the type i secretion system are associated with secondary SecA-DEAD domain proteins in some species of planctomycetes, verrucomicrobia, proteobacteria, nitrospirae and Chlorobi Plos One. 10. DOI: 10.1371/journal.pone.0129066 |
0.704 |
|
| 2014 |
Holland-Moritz HE, Coil DA, Badger JH, Dmitrov GI, Khouri H, Ward NL, Robb FT, Eisen JA. Draft Genome Sequence of the Pyridinediol-Fermenting Bacterium Synergistes jonesii 78-1. Genome Announcements. 2. PMID 25146141 DOI: 10.1128/Genomea.00833-14 |
0.507 |
|
| 2014 |
Gottshall EY, Seebart C, Gatlin JC, Ward NL. Spatially segregated transcription and translation in cells of the endomembrane-containing bacterium Gemmata obscuriglobus. Proceedings of the National Academy of Sciences of the United States of America. 111: 11067-72. PMID 25024214 DOI: 10.1073/Pnas.1409187111 |
0.34 |
|
| 2014 |
Alexiev A, Coil DA, Badger JH, Enticknap J, Ward N, Robb FT, Eisen JA. Complete Genome Sequence of Coprothermobacter proteolyticus DSM 5265. Genome Announcements. 2. PMID 24831154 DOI: 10.1128/Genomea.00470-14 |
0.475 |
|
| 2014 |
Coil DA, Badger JH, Forberger HC, Riggs F, Madupu R, Fedorova N, Ward N, Robb FT, Eisen JA. Complete Genome Sequence of the Extreme Thermophile Dictyoglomus thermophilum H-6-12. Genome Announcements. 2. PMID 24558247 DOI: 10.1128/Genomea.00109-14 |
0.446 |
|
| 2014 |
Kamneva OK, Ward NL. Reconciliation approaches to determining HGT, duplications, and losses in gene trees Methods in Microbiology. 41: 183-199. DOI: 10.1016/Bs.Mim.2014.08.004 |
0.763 |
|
| 2014 |
Kamneva OK, Haft DH, Knight SJ, Liberles DA, Ward NL. Genomics and bioinformatics of the PVC superphylum Planctomycetes: Cell Structure, Origins and Biology. 165-193. DOI: 10.1007/978-1-62703-502-6_7 |
0.75 |
|
| 2013 |
Coil DA, Lo JR, Chen R, Ward N, Robb FT, Eisen JA. Draft Genome Sequence of the Arsenate-Respiring Bacterium Chrysiogenes arsenatis Strain DSM 11915. Genome Announcements. 1. PMID 24233593 DOI: 10.1128/Genomea.00953-13 |
0.469 |
|
| 2012 |
Kamneva OK, Knight SJ, Liberles DA, Ward NL. Analysis of genome content evolution in pvc bacterial super-phylum: assessment of candidate genes associated with cellular organization and lifestyle. Genome Biology and Evolution. 4: 1375-90. PMID 23221607 DOI: 10.1093/Gbe/Evs113 |
0.778 |
|
| 2012 |
Steven B, McCann S, Ward NL. Pyrosequencing of plastid 23S rRNA genes reveals diverse and dynamic cyanobacterial and algal populations in two eutrophic lakes. Fems Microbiology Ecology. 82: 607-15. PMID 22680682 DOI: 10.1111/J.1574-6941.2012.01429.X |
0.37 |
|
| 2011 |
Sait M, Kamneva OK, Fay DS, Kirienko NV, Polek J, Shirasu-Hiza MM, Ward NL. Genomic and Experimental Evidence Suggests that Verrucomicrobium spinosum Interacts with Eukaryotes. Frontiers in Microbiology. 2: 211. PMID 22022322 DOI: 10.3389/Fmicb.2011.00211 |
0.741 |
|
| 2011 |
Campbell MA, Chain PS, Dang H, El Sheikh AF, Norton JM, Ward NL, Ward BB, Klotz MG. Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia-oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names 'Nitrosococcus halophilus' and 'Nitrosomonas mobilis'. Fems Microbiology Ecology. 76: 39-48. PMID 21204874 DOI: 10.1111/J.1574-6941.2010.01027.X |
0.349 |
|
| 2011 |
Domman DB, Steven BT, Ward NL. Random transposon mutagenesis of Verrucomicrobium spinosum DSM 4136(T). Archives of Microbiology. 193: 307-12. PMID 21184215 DOI: 10.1007/S00203-010-0666-5 |
0.411 |
|
| 2011 |
Steven B, Dowd SE, Schulmeyer KH, Ward NL. Phylum-targeted pyrosequencing reveals diverse planctomycete populations in a eutrophic lake Aquatic Microbial Ecology. 64: 41-49. DOI: 10.3354/Ame01507 |
0.381 |
|
| 2010 |
Ward NL, Klotz MG. Harnessing the power of microbial genomics for exploring exceptions and shifting perceptions. Frontiers in Microbiology. 1: 146. PMID 21687802 DOI: 10.3389/Fmicb.2010.00146 |
0.457 |
|
| 2010 |
Kamneva OK, Liberles DA, Ward NL. Genome-wide influence of indel Substitutions on evolution of bacteria of the PVC superphylum, revealed using a novel computational method. Genome Biology and Evolution. 2: 870-86. PMID 21048002 DOI: 10.1093/Gbe/Evq071 |
0.758 |
|
| 2009 |
Yang JC, Madupu R, Durkin AS, Ekborg NA, Pedamallu CS, Hostetler JB, Radune D, Toms BS, Henrissat B, Coutinho PM, Schwarz S, Field L, Trindade-Silva AE, Soares CA, Elshahawi S, ... ... Ward N, et al. The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms). Plos One. 4: e6085. PMID 19568419 DOI: 10.1371/Journal.Pone.0006085 |
0.458 |
|
| 2009 |
Ward NL, Steven B, Penn K, Methé BA, Detrich WH. Characterization of the intestinal microbiota of two Antarctic notothenioid fish species. Extremophiles : Life Under Extreme Conditions. 13: 679-85. PMID 19472032 DOI: 10.1007/S00792-009-0252-4 |
0.371 |
|
| 2009 |
Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J, Barabote RD, Bradley B, Brettin TS, Brinkac LM, Bruce D, et al. Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Applied and Environmental Microbiology. 75: 2046-56. PMID 19201974 DOI: 10.1128/Aem.02294-08 |
0.49 |
|
| 2009 |
Wu D, Raymond J, Wu M, Chatterji S, Ren Q, Graham JE, Bryant DA, Robb F, Colman A, Tallon LJ, Badger JH, Madupu R, Ward NL, Eisen JA. Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum. Plos One. 4: e4207. PMID 19148287 DOI: 10.1371/Journal.Pone.0004207 |
0.52 |
|
| 2008 |
Wu D, Hartman A, Ward N, Eisen JA. An automated phylogenetic tree-based small subunit rRNA taxonomy and alignment pipeline (STAP). Plos One. 3: e2566. PMID 18596968 DOI: 10.1371/Journal.Pone.0002566 |
0.398 |
|
| 2008 |
Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, ... ... Ward N, et al. The minimum information about a genome sequence (MIGS) specification. Nature Biotechnology. 26: 541-7. PMID 18464787 DOI: 10.1038/Nbt1360 |
0.486 |
|
| 2007 |
von Mering C, Hugenholtz P, Raes J, Tringe SG, Doerks T, Jensen LJ, Ward N, Bork P. Quantitative phylogenetic assessment of microbial communities in diverse environments. Science (New York, N.Y.). 315: 1126-30. PMID 17272687 DOI: 10.1126/Science.1133420 |
0.343 |
|
| 2006 |
Badger JH, Hoover TR, Brun YV, Weiner RM, Laub MT, Alexandre G, Mrázek J, Ren Q, Paulsen IT, Nelson KE, Khouri HM, Radune D, Sosa J, Dodson RJ, Sullivan SA, ... ... Ward NL, et al. Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus Journal of Bacteriology. 188: 6841-6850. PMID 16980487 DOI: 10.1128/Jb.00111-06 |
0.479 |
|
| 2006 |
Haft DH, Paulsen IT, Ward N, Selengut JD. Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic. Bmc Biology. 4: 29. PMID 16930487 DOI: 10.1186/1741-7007-4-29 |
0.429 |
|
| 2006 |
Ward N. New directions and interactions in metagenomics research. Fems Microbiology Ecology. 55: 331-8. PMID 16466373 DOI: 10.1111/J.1574-6941.2005.00055.X |
0.419 |
|
| 2006 |
Penn K, Wu D, Eisen JA, Ward N. Characterization of bacterial communities associated with deep-sea corals on Gulf of Alaska seamounts. Applied and Environmental Microbiology. 72: 1680-3. PMID 16461727 DOI: 10.1128/Aem.72.2.1680-1683.2006 |
0.303 |
|
| 2005 |
Tettelin H, Masignani V, Cieslewicz MJ, Donati C, Medini D, Ward NL, Angiuoli SV, Crabtree J, Jones AL, Durkin AS, Deboy RT, Davidsen TM, Mora M, Scarselli M, Margarit y Ros I, et al. Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome". Proceedings of the National Academy of Sciences of the United States of America. 102: 13950-5. PMID 16172379 DOI: 10.1073/Pnas.0506758102 |
0.55 |
|
| 2005 |
Ward N, Fraser CM. How genomics has affected the concept of microbiology. Current Opinion in Microbiology. 8: 564-71. PMID 16125442 DOI: 10.1016/J.Mib.2005.08.011 |
0.549 |
|
| 2005 |
Badger JH, Eisen JA, Ward NL. Genomic analysis of Hyphomonas neptunium contradicts 16S rRNA gene-based phylogenetic analysis: implications for the taxonomy of the orders 'Rhodobacterales' and Caulobacterales. International Journal of Systematic and Evolutionary Microbiology. 55: 1021-6. PMID 15879228 DOI: 10.1099/Ijs.0.63510-0 |
0.446 |
|
| 2005 |
Seshadri R, Adrian L, Fouts DE, Eisen JA, Phillippy AM, Methe BA, Ward NL, Nelson WC, Deboy RT, Khouri HM, Kolonay JF, Dodson RJ, Daugherty SC, Brinkac LM, Sullivan SA, et al. Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes. Science (New York, N.Y.). 307: 105-8. PMID 15637277 DOI: 10.1126/Science.1102226 |
0.479 |
|
| 2004 |
Bauer M, Lombardot T, Teeling H, Ward NL, Amann RI, Glöckner FO. Archaea-like genes for C1-transfer enzymes in Planctomycetes: phylogenetic implications of their unexpected presence in this phylum. Journal of Molecular Evolution. 59: 571-86. PMID 15693614 DOI: 10.1007/s00239-004-2643-6 |
0.37 |
|
| 2004 |
Moran MA, Buchan A, González JM, Heidelberg JF, Whitman WB, Kiene RP, Henriksen JR, King GM, Belas R, Fuqua C, Brinkac L, Lewis M, Johri S, Weaver B, Pai G, ... ... Ward N, et al. Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature. 432: 910-3. PMID 15602564 DOI: 10.1038/Nature03170 |
0.5 |
|
| 2004 |
Ward N, Larsen Ø, Sakwa J, Bruseth L, Khouri H, Durkin AS, Dimitrov G, Jiang L, Scanlan D, Kang KH, Lewis M, Nelson KE, Methé B, Wu M, Heidelberg JF, et al. Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath). Plos Biology. 2: e303. PMID 15383840 DOI: 10.1371/Journal.Pbio.0020303 |
0.5 |
|
| 2004 |
Heidelberg JF, Seshadri R, Haveman SA, Hemme CL, Paulsen IT, Kolonay JF, Eisen JA, Ward N, Methe B, Brinkac LM, Daugherty SC, Deboy RT, Dodson RJ, Durkin AS, Madupu R, et al. The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Nature Biotechnology. 22: 554-9. PMID 15077118 DOI: 10.1038/Nbt959 |
0.455 |
|
| 2003 |
Methé BA, Nelson KE, Eisen JA, Paulsen IT, Nelson W, Heidelberg JF, Wu D, Wu M, Ward N, Beanan MJ, Dodson RJ, Madupu R, Brinkac LM, Daugherty SC, DeBoy RT, et al. Genome of Geobacter sulfurreducens: metal reduction in subsurface environments. Science (New York, N.Y.). 302: 1967-9. PMID 14671304 DOI: 10.1126/Science.1088727 |
0.34 |
|
| 2003 |
Seshadri R, Paulsen IT, Eisen JA, Read TD, Nelson KE, Nelson WC, Ward NL, Tettelin H, Davidsen TM, Beanan MJ, Deboy RT, Daugherty SC, Brinkac LM, Madupu R, Dodson RJ, et al. Complete genome sequence of the Q-fever pathogen Coxiella burnetii. Proceedings of the National Academy of Sciences of the United States of America. 100: 5455-60. PMID 12704232 DOI: 10.1073/Pnas.0931379100 |
0.55 |
|
| 2002 |
Heidelberg JF, Paulsen IT, Nelson KE, Gaidos EJ, Nelson WC, Read TD, Eisen JA, Seshadri R, Ward N, Methe B, Clayton RA, Meyer T, Tsapin A, Scott J, Beanan M, et al. Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis. Nature Biotechnology. 20: 1118-23. PMID 12368813 DOI: 10.1038/Nbt749 |
0.469 |
|
| 2000 |
Ward NL, Rainey FA, Hedlund BP, Staley JT, Ludwig W, Stackebrandt E. Comparative phylogenetic analyses of members of the order Planctomycetales and the division Verrucomicrobia: 23S rRNA gene sequence analysis supports the 16S rRNA gene sequence-derived phylogeny. International Journal of Systematic and Evolutionary Microbiology. 50: 1965-72. PMID 11155969 DOI: 10.1099/00207713-50-6-1965 |
0.311 |
|
| 1993 |
Rainey FA, Ward NL, Morgan HW, Toalster R, Stackebrandt E. Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their reclassification Journal of Bacteriology. 175: 4772-4779. PMID 7687600 DOI: 10.1128/Jb.175.15.4772-4779.1993 |
0.419 |
|
| Show low-probability matches. |