Daniel A. Colon-Ramos, Ph.D. - Publications

2003 Duke University, Durham, NC 
Molecular Biology, Cell Biology

50 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Jang S, Xuan Z, Lagoy RC, Jawerth LM, Gonzalez IJ, Singh M, Prashad S, Kim HS, Patel A, Albrecht DR, Hyman AA, Colón-Ramos DA. Phosphofructokinase Relocalizes into Subcellular Compartments with Liquid-like Properties In Vivo. Biophysical Journal. PMID 32853565 DOI: 10.1016/J.Bpj.2020.08.002  1
2020 Guo M, Li Y, Su Y, Lambert T, Nogare DD, Moyle MW, Duncan LH, Ikegami R, Santella A, Rey-Suarez I, Green D, Beiriger A, Chen J, Vishwasrao H, Ganesan S, et al. Rapid image deconvolution and multiview fusion for optical microscopy. Nature Biotechnology. PMID 32601431 DOI: 10.1038/S41587-020-0560-X  1
2020 Fan J, Ji T, Wang K, Huang J, Wang M, Manning L, Dong X, Shi Y, Zhang X, Shao Z, Colón-Ramos DA. A muscle-epidermis-glia signaling axis sustains synaptic specificity during allometric growth in . Elife. 9. PMID 32255430 DOI: 10.7554/Elife.55890  1
2020 Hill SE, Colón-Ramos DA. The Journey of the Synaptic Autophagosome: A Cell Biological Perspective. Neuron. 105: 961-973. PMID 32191859 DOI: 10.1016/J.Neuron.2020.01.018  1
2020 Fan J, Ji T, Wang K, Huang J, Wang M, Manning L, Dong X, Shi Y, Zhang X, Shao Z, Colón-Ramos DA. Author response: A muscle-epidermis-glia signaling axis sustains synaptic specificity during allometric growth in Caenorhabditis elegans Elife. DOI: 10.7554/Elife.55890.Sa2  1
2019 Colón-Ramos DA, La Riviere P, Shroff H, Oldenbourg R. Transforming the development and dissemination of cutting-edge microscopy and computation. Nature Methods. 16: 667-669. PMID 31363203 DOI: 10.1038/S41592-019-0475-Y  1
2019 Hill SE, Colón-Ramos DA. A specific ATG-4 isoform is required for autophagic maturation and clearance in neurons. Autophagy. 1-3. PMID 31291815 DOI: 10.1080/15548627.2019.1632123  1
2019 Duncan LH, Moyle MW, Shao L, Sengupta T, Ikegami R, Kumar A, Guo M, Christensen R, Santella A, Bao Z, Shroff H, Mohler W, Colón-Ramos DA. Isotropic Light-Sheet Microscopy and Automated Cell Lineage Analyses to Catalogue Caenorhabditis elegans Embryogenesis with Subcellular Resolution. Journal of Visualized Experiments : Jove. PMID 31233035 DOI: 10.3791/59533  1
2019 Hill SE, Kauffman KJ, Krout M, Richmond JE, Melia TJ, Colón-Ramos DA. Maturation and Clearance of Autophagosomes in Neurons Depends on a Specific Cysteine Protease Isoform, ATG-4.2. Developmental Cell. PMID 30880001 DOI: 10.1016/J.Devcel.2019.02.013  1
2018 Rhoades JL, Nelson JC, Nwabudike I, Yu SK, McLachlan IG, Madan GK, Abebe E, Powers JR, Colón-Ramos DA, Flavell SW. ASICs Mediate Food Responses in an Enteric Serotonergic Neuron that Controls Foraging Behaviors. Cell. PMID 30580965 DOI: 10.1016/J.Cell.2018.11.023  1
2018 Hawk JD, Calvo AC, Liu P, Almoril-Porras A, Aljobeh A, Torruella-Suárez ML, Ren I, Cook N, Greenwood J, Luo L, Wang ZW, Samuel ADT, Colón-Ramos DA. Integration of Plasticity Mechanisms within a Single Sensory Neuron of C. elegans Actuates a Memory. Neuron. PMID 29307713 DOI: 10.1016/J.Neuron.2017.12.027  1
2017 Xuan Z, Manning L, Nelson J, Richmond JE, Colón-Ramos DA, Shen K, Kurshan PT. Clarinet (CLA-1), a novel active zone protein required for synaptic vesicle clustering and release. Elife. 6. PMID 29160205 DOI: 10.7554/Elife.29276  1
2017 Ardiel EL, Kumar A, Marbach J, Christensen R, Gupta R, Duncan W, Daniels JS, Stuurman N, Colón-Ramos D, Shroff H. Visualizing Calcium Flux in Freely Moving Nematode Embryos. Biophysical Journal. 112: 1975-1983. PMID 28494967 DOI: 10.1016/J.Bpj.2017.02.035  1
2017 Xuan Z, Manning L, Nelson J, Richmond JE, Colón-Ramos DA, Shen K, Kurshan PT. Author response: Clarinet (CLA-1), a novel active zone protein required for synaptic vesicle clustering and release Elife. DOI: 10.7554/Elife.29276.022  1
2016 Colón-Ramos DA. The need to connect: on the cell biology of synapses, behaviors, and networks in science. Molecular Biology of the Cell. 27: 3197-3201. PMID 27799494 DOI: 10.1091/Mbc.E16-07-0507  0.01
2016 Kumar A, Christensen R, Guo M, Chandris P, Duncan W, Wu Y, Santella A, Moyle M, Winter PW, Colón-Ramos D, Bao Z, Shroff H. Using Stage- and Slit-Scanning to Improve Contrast and Optical Sectioning in Dual-View Inverted Light Sheet Microscopy (diSPIM). The Biological Bulletin. 231: 26-39. PMID 27638693 DOI: 10.1086/689589  1
2016 Stavoe AK, Hill SE, Hall DH, Colón-Ramos DA. KIF1A/UNC-104 Transports ATG-9 to Regulate Neurodevelopment and Autophagy at Synapses. Developmental Cell. PMID 27396362 DOI: 10.1016/J.Devcel.2016.06.012  1
2016 Jang S, Nelson JC, Bend EG, Rodríguez-Laureano L, Tueros FG, Cartagenova L, Underwood K, Jorgensen EM, Colón-Ramos DA. Glycolytic Enzymes Localize to Synapses under Energy Stress to Support Synaptic Function. Neuron. PMID 27068791 DOI: 10.1016/J.Neuron.2016.03.011  1
2015 Christensen RP, Bokinsky A, Santella A, Wu Y, Marquina-Solis J, Guo M, Kovacevic I, Kumar A, Winter PW, Tashakkori N, McCreedy E, Liu H, McAuliffe M, Mohler W, Colon-Ramos DA, et al. Untwisting the Caenorhabditis elegans embryo. Elife. 4. PMID 26633880 DOI: 10.7554/Elife.10070  1
2015 Santella A, Catena R, Kovacevic I, Shah P, Yu Z, Marquina-Solis J, Kumar A, Wu Y, Schaff J, Colón-Ramos D, Shroff H, Mohler WA, Bao Z. WormGUIDES: an interactive single cell developmental atlas and tool for collaborative multidimensional data exploration. Bmc Bioinformatics. 16: 189. PMID 26051157 DOI: 10.1186/S12859-015-0627-8  1
2015 Christensen RP, Bokinsky A, Santella A, Wu Y, Marquina-Solis J, Guo M, Kovacevic I, Kumar A, Winter PW, Tashakkori N, McCreedy E, Liu H, McAuliffe M, Mohler W, Colón-Ramos DA, et al. Author response: Untwisting the Caenorhabditis elegans embryo Elife. DOI: 10.7554/Elife.10070.058  1
2015 Christensen R, Bokinsky A, Santella A, Wu Y, Marquina J, Kovacevic I, Kumar A, Winter P, McCreedy E, Mohler W, Bao Z, Colón-Ramos D, Shroff H. An imaging and analysis toolset for the study of Caenorhabditis elegans neurodevelopment Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9334. DOI: 10.1117/12.2082394  1
2015 Kumar A, Colón-Ramos DA, Shroff H. Watching a roundworm develop with a sheet of light Physics Today. 68: 58-59. DOI: 10.1063/Pt.3.2856  1
2014 Kumar A, Wu Y, Christensen R, Chandris P, Gandler W, McCreedy E, Bokinsky A, Colón-Ramos DA, Bao Z, McAuliffe M, Rondeau G, Shroff H. Dual-view plane illumination microscopy for rapid and spatially isotropic imaging. Nature Protocols. 9: 2555-73. PMID 25299154 DOI: 10.1038/Nprot.2014.172  1
2014 Luo L, Wen Q, Ren J, Hendricks M, Gershow M, Qin Y, Greenwood J, Soucy ER, Klein M, Smith-Parker HK, Calvo AC, Colón-Ramos DA, Samuel AD, Zhang Y. Dynamic encoding of perception, memory, and movement in a C. elegans chemotaxis circuit. Neuron. 82: 1115-28. PMID 24908490 DOI: 10.1016/J.Neuron.2014.05.010  1
2014 Luo L, Cook N, Venkatachalam V, Martinez-Velazquez LA, Zhang X, Calvo AC, Hawk J, MacInnis BL, Frank M, Ng JH, Klein M, Gershow M, Hammarlund M, Goodman MB, Colón-Ramos DA, et al. Bidirectional thermotaxis in Caenorhabditis elegans is mediated by distinct sensorimotor strategies driven by the AFD thermosensory neurons. Proceedings of the National Academy of Sciences of the United States of America. 111: 2776-81. PMID 24550307 DOI: 10.1073/Pnas.1315205111  1
2014 Zhang F, Bhattacharya A, Nelson JC, Abe N, Gordon P, Lloret-Fernandez C, Maicas M, Flames N, Mann RS, Colón-Ramos DA, Hobert O. The LIM and POU homeobox genes ttx-3 and unc-86 act as terminal selectors in distinct cholinergic and serotonergic neuron types. Development (Cambridge, England). 141: 422-35. PMID 24353061 DOI: 10.1242/Dev.099721  1
2013 Guerrero-Medina G, Feliú-Mójer M, González-Espada W, Díaz-Muñoz G, López M, Díaz-Muñoz SL, Fortis-Santiago Y, Flores-Otero J, Craig D, Colón-Ramos DA. Supporting diversity in science through social networking. Plos Biology. 11: e1001740. PMID 24391467 DOI: 10.1371/Journal.Pbio.1001740  0.01
2013 Wu Y, Wawrzusin P, Senseney J, Fischer RS, Christensen R, Santella A, York AG, Winter PW, Waterman CM, Bao Z, Colón-Ramos DA, McAuliffe M, Shroff H. Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy. Nature Biotechnology. 31: 1032-8. PMID 24108093 DOI: 10.1038/Nbt.2713  1
2013 Christensen R, Shao Z, Colón-Ramos DA. The cell biology of synaptic specificity during development. Current Opinion in Neurobiology. 23: 1018-26. PMID 23932598 DOI: 10.1016/J.Conb.2013.07.004  1
2013 Shao Z, Watanabe S, Christensen R, Jorgensen EM, Colón-Ramos DA. Synapse location during growth depends on glia location. Cell. 154: 337-50. PMID 23870123 DOI: 10.1016/J.Cell.2013.06.028  1
2013 Wu Y, Christensen R, Colón-Ramos D, Shroff H. Advanced optical imaging techniques for neurodevelopment. Current Opinion in Neurobiology. 23: 1090-7. PMID 23831260 DOI: 10.1016/J.Conb.2013.06.008  1
2013 Nelson JC, Stavoe AK, Colón-Ramos DA. The actin cytoskeleton in presynaptic assembly. Cell Adhesion & Migration. 7: 379-87. PMID 23628914 DOI: 10.4161/Cam.24803  1
2013 Nelson JC, Colón-Ramos DA. Serotonergic neurosecretory synapse targeting is controlled by netrin-releasing guidepost neurons in Caenorhabditis elegans. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 1366-76. PMID 23345213 DOI: 10.1523/Jneurosci.3471-12.2012  1
2012 Stavoe AK, Nelson JC, Martínez-Velázquez LA, Klein M, Samuel AD, Colón-Ramos DA. Synaptic vesicle clustering requires a distinct MIG-10/Lamellipodin isoform and ABI-1 downstream from Netrin. Genes & Development. 26: 2206-21. PMID 23028145 DOI: 10.1101/Gad.193409.112  1
2012 Stavoe AK, Colón-Ramos DA. Netrin instructs synaptic vesicle clustering through Rac GTPase, MIG-10, and the actin cytoskeleton. The Journal of Cell Biology. 197: 75-88. PMID 22451697 DOI: 10.1083/Jcb.201110127  1
2012 Smith CJ, Watson JD, VanHoven MK, Colón-Ramos DA, Miller DM. Netrin (UNC-6) mediates dendritic self-avoidance. Nature Neuroscience. 15: 731-7. PMID 22426253 DOI: 10.1038/Nn.3065  1
2011 Christensen R, de la Torre-Ubieta L, Bonni A, Colón-Ramos DA. A conserved PTEN/FOXO pathway regulates neuronal morphology during C. elegans development. Development (Cambridge, England). 138: 5257-67. PMID 22069193 DOI: 10.1242/Dev.069062  1
2011 Wu Y, Ghitani A, Christensen R, Santella A, Du Z, Rondeau G, Bao Z, Colón-Ramos D, Shroff H. Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America. 108: 17708-13. PMID 22006307 DOI: 10.1073/Pnas.1108494108  1
2011 Rankin BR, Moneron G, Wurm CA, Nelson JC, Walter A, Schwarzer D, Schroeder J, Colón-Ramos DA, Hell SW. Nanoscopy in a living multicellular organism expressing GFP. Biophysical Journal. 100: L63-5. PMID 21689517 DOI: 10.1016/J.Bpj.2011.05.020  1
2011 Uniacke J, Colón-Ramos D, Zerges W. FISH and immunofluorescence staining in Chlamydomonas. Methods of Molecular Biology. 714: 15-29. PMID 21431732 DOI: 10.1007/978-1-61779-005-8_2  0.24
2010 Ha HI, Hendricks M, Shen Y, Gabel CV, Fang-Yen C, Qin Y, Colón-Ramos D, Shen K, Samuel AD, Zhang Y. Functional organization of a neural network for aversive olfactory learning in Caenorhabditis elegans. Neuron. 68: 1173-86. PMID 21172617 DOI: 10.1016/J.Neuron.2010.11.025  1
2009 Colón-Ramos DA. Synapse formation in developing neural circuits. Current Topics in Developmental Biology. 87: 53-79. PMID 19427516 DOI: 10.1016/S0070-2153(09)01202-2  0.01
2008 Colón-Ramos DA, Shen K. Cellular conductors: glial cells as guideposts during neural circuit development. Plos Biology. 6: e112. PMID 18447586 DOI: 10.1371/Journal.Pbio.0060112  1
2007 Colón-Ramos DA, Margeta MA, Shen K. Glia promote local synaptogenesis through UNC-6 (netrin) signaling in C. elegans Science. 318: 103-106. PMID 17916735 DOI: 10.1126/Science.1143762  1
2006 Colón-Ramos DA, Shenvi CL, Weitzel DH, Gan EC, Matts R, Cate J, Kornbluth S. Direct ribosomal binding by a cellular inhibitor of translation. Nature Structural & Molecular Biology. 13: 103-11. PMID 16429152 DOI: 10.1038/Nsmb1052  1
2003 Colón-Ramos DA, Irusta PM, Gan EC, Olson MR, Song J, Morimoto RI, Elliott RM, Lombard M, Hollingsworth R, Hardwick JM, Smith GK, Kornbluth S. Inhibition of translation and induction of apoptosis by Bunyaviral nonstructural proteins bearing sequence similarity to reaper. Molecular Biology of the Cell. 14: 4162-72. PMID 14517326 DOI: 10.1091/Mbc.E03-03-0139  1
2003 Olson MR, Holley CL, Gan EC, Colón-Ramos DA, Kaplan B, Kornbluth S. A GH3-like domain in reaper is required for mitochondrial localization and induction of IAP degradation. The Journal of Biological Chemistry. 278: 44758-68. PMID 12917412 DOI: 10.1074/Jbc.M308055200  1
2003 Colón-Ramos DA, Salisbury JL, Sanders MA, Shenoy SM, Singer RH, García-Blanco MA. Asymmetric distribution of nuclear pore complexes and the cytoplasmic localization of beta2-tubulin mRNA in Chlamydomonas reinhardtii. Developmental Cell. 4: 941-52. PMID 12791277 DOI: 10.1016/S1534-5807(03)00163-1  1
2002 Holley CL, Olson MR, Colón-Ramos DA, Kornbluth S. Reaper eliminates IAP proteins through stimulated IAP degradation and generalized translational inhibition. Nature Cell Biology. 4: 439-44. PMID 12021770 DOI: 10.1038/Ncb798  1
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