☰

Daniel A. Colon-Ramos, Ph.D. - Publications

Affiliations: 
2003 Duke University, Durham, NC 
Area:
Molecular Biology, Cell Biology
Tree Info Similar researchers PubMed Report error

28/62 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Xuan Z, Colón-Ramos DA. The active zone protein CLA-1 (Clarinet) bridges two subsynaptic domains to regulate presynaptic sorting of ATG-9. Autophagy. 1-2. PMID 37389488 DOI: 10.1080/15548627.2023.2229227  0.322
2023 Xuan Z, Yang S, Clark B, Hill SE, Manning L, Colón-Ramos DA. The active zone protein Clarinet regulates synaptic sorting of ATG-9 and presynaptic autophagy. Plos Biology. 21: e3002030. PMID 37053235 DOI: 10.1371/journal.pbio.3002030  0.334
2021 Klionsky DJ, Abdel-Aziz AK, Abdelfatah S, Abdellatif M, Abdoli A, Abel S, Abeliovich H, Abildgaard MH, Abudu YP, Acevedo-Arozena A, Adamopoulos IE, Adeli K, Adolph TE, Adornetto A, Aflaki E, et al. Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy. 1-382. PMID 33634751 DOI: 10.1080/15548627.2020.1797280  0.589
2020 Jang S, Xuan Z, Lagoy RC, Jawerth LM, Gonzalez IJ, Singh M, Prashad S, Kim HS, Patel A, Albrecht DR, Hyman AA, Colón-Ramos DA. Phosphofructokinase Relocalizes into Subcellular Compartments with Liquid-like Properties In Vivo. Biophysical Journal. PMID 32853565 DOI: 10.1016/J.Bpj.2020.08.002  0.365
2020 Fan J, Ji T, Wang K, Huang J, Wang M, Manning L, Dong X, Shi Y, Zhang X, Shao Z, Colón-Ramos DA. A muscle-epidermis-glia signaling axis sustains synaptic specificity during allometric growth in . Elife. 9. PMID 32255430 DOI: 10.7554/Elife.55890  0.329
2020 Hill SE, Colón-Ramos DA. The Journey of the Synaptic Autophagosome: A Cell Biological Perspective. Neuron. 105: 961-973. PMID 32191859 DOI: 10.1016/J.Neuron.2020.01.018  0.388
2019 Hill SE, Colón-Ramos DA. A specific ATG-4 isoform is required for autophagic maturation and clearance in neurons. Autophagy. 1-3. PMID 31291815 DOI: 10.1080/15548627.2019.1632123  0.397
2019 Duncan LH, Moyle MW, Shao L, Sengupta T, Ikegami R, Kumar A, Guo M, Christensen R, Santella A, Bao Z, Shroff H, Mohler W, Colón-Ramos DA. Isotropic Light-Sheet Microscopy and Automated Cell Lineage Analyses to Catalogue Caenorhabditis elegans Embryogenesis with Subcellular Resolution. Journal of Visualized Experiments : Jove. PMID 31233035 DOI: 10.3791/59533  0.327
2019 Hill SE, Kauffman KJ, Krout M, Richmond JE, Melia TJ, Colón-Ramos DA. Maturation and Clearance of Autophagosomes in Neurons Depends on a Specific Cysteine Protease Isoform, ATG-4.2. Developmental Cell. PMID 30880001 DOI: 10.1016/J.Devcel.2019.02.013  0.406
2018 Rhoades JL, Nelson JC, Nwabudike I, Yu SK, McLachlan IG, Madan GK, Abebe E, Powers JR, Colón-Ramos DA, Flavell SW. ASICs Mediate Food Responses in an Enteric Serotonergic Neuron that Controls Foraging Behaviors. Cell. PMID 30580965 DOI: 10.1016/J.Cell.2018.11.023  0.474
2018 Hawk JD, Calvo AC, Liu P, Almoril-Porras A, Aljobeh A, Torruella-Suárez ML, Ren I, Cook N, Greenwood J, Luo L, Wang ZW, Samuel ADT, Colón-Ramos DA. Integration of Plasticity Mechanisms within a Single Sensory Neuron of C. elegans Actuates a Memory. Neuron. PMID 29307713 DOI: 10.1016/J.Neuron.2017.12.027  0.309
2017 Xuan Z, Manning L, Nelson J, Richmond JE, Colón-Ramos DA, Shen K, Kurshan PT. Clarinet (CLA-1), a novel active zone protein required for synaptic vesicle clustering and release. Elife. 6. PMID 29160205 DOI: 10.7554/Elife.29276  0.52
2017 Xuan Z, Manning L, Nelson J, Richmond JE, Colón-Ramos DA, Shen K, Kurshan PT. Author response: Clarinet (CLA-1), a novel active zone protein required for synaptic vesicle clustering and release Elife. DOI: 10.7554/Elife.29276.022  0.334
2016 Colón-Ramos DA. The need to connect: on the cell biology of synapses, behaviors, and networks in science. Molecular Biology of the Cell. 27: 3197-3201. PMID 27799494 DOI: 10.1091/Mbc.E16-07-0507  0.344
2016 Stavoe AK, Hill SE, Hall DH, Colón-Ramos DA. KIF1A/UNC-104 Transports ATG-9 to Regulate Neurodevelopment and Autophagy at Synapses. Developmental Cell. PMID 27396362 DOI: 10.1016/J.Devcel.2016.06.012  0.416
2016 Jang S, Nelson JC, Bend EG, Rodríguez-Laureano L, Tueros FG, Cartagenova L, Underwood K, Jorgensen EM, Colón-Ramos DA. Glycolytic Enzymes Localize to Synapses under Energy Stress to Support Synaptic Function. Neuron. PMID 27068791 DOI: 10.1016/J.Neuron.2016.03.011  0.515
2015 Christensen RP, Bokinsky A, Santella A, Wu Y, Marquina-Solis J, Guo M, Kovacevic I, Kumar A, Winter PW, Tashakkori N, McCreedy E, Liu H, McAuliffe M, Mohler W, Colon-Ramos DA, et al. Untwisting the Caenorhabditis elegans embryo. Elife. 4. PMID 26633880 DOI: 10.7554/Elife.10070  0.323
2015 Christensen R, Bokinsky A, Santella A, Wu Y, Marquina J, Kovacevic I, Kumar A, Winter P, McCreedy E, Mohler W, Bao Z, Colón-Ramos D, Shroff H. An imaging and analysis toolset for the study of Caenorhabditis elegans neurodevelopment Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9334. DOI: 10.1117/12.2082394  0.329
2014 Zhang F, Bhattacharya A, Nelson JC, Abe N, Gordon P, Lloret-Fernandez C, Maicas M, Flames N, Mann RS, Colón-Ramos DA, Hobert O. The LIM and POU homeobox genes ttx-3 and unc-86 act as terminal selectors in distinct cholinergic and serotonergic neuron types. Development (Cambridge, England). 141: 422-35. PMID 24353061 DOI: 10.1242/Dev.099721  0.497
2013 Christensen R, Shao Z, Colón-Ramos DA. The cell biology of synaptic specificity during development. Current Opinion in Neurobiology. 23: 1018-26. PMID 23932598 DOI: 10.1016/J.Conb.2013.07.004  0.357
2012 Stavoe AK, Colón-Ramos DA. Netrin instructs synaptic vesicle clustering through Rac GTPase, MIG-10, and the actin cytoskeleton. The Journal of Cell Biology. 197: 75-88. PMID 22451697 DOI: 10.1083/Jcb.201110127  0.347
2011 Wu Y, Ghitani A, Christensen R, Santella A, Du Z, Rondeau G, Bao Z, Colón-Ramos D, Shroff H. Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America. 108: 17708-13. PMID 22006307 DOI: 10.1073/Pnas.1108494108  0.316
2009 Colón-Ramos DA. Synapse formation in developing neural circuits. Current Topics in Developmental Biology. 87: 53-79. PMID 19427516 DOI: 10.1016/S0070-2153(09)01202-2  0.374
2008 Colón-Ramos DA, Shen K. Cellular conductors: glial cells as guideposts during neural circuit development. Plos Biology. 6: e112. PMID 18447586 DOI: 10.1371/Journal.Pbio.0060112  0.331
2007 Colón-Ramos DA, Margeta MA, Shen K. Glia promote local synaptogenesis through UNC-6 (netrin) signaling in C. elegans Science. 318: 103-106. PMID 17916735 DOI: 10.1126/Science.1143762  0.363
2006 Colón-Ramos DA, Shenvi CL, Weitzel DH, Gan EC, Matts R, Cate J, Kornbluth S. Direct ribosomal binding by a cellular inhibitor of translation. Nature Structural & Molecular Biology. 13: 103-11. PMID 16429152 DOI: 10.1038/Nsmb1052  0.592
2003 Olson MR, Holley CL, Gan EC, Colón-Ramos DA, Kaplan B, Kornbluth S. A GH3-like domain in reaper is required for mitochondrial localization and induction of IAP degradation. The Journal of Biological Chemistry. 278: 44758-68. PMID 12917412 DOI: 10.1074/Jbc.M308055200  0.672
2002 Holley CL, Olson MR, Colón-Ramos DA, Kornbluth S. Reaper eliminates IAP proteins through stimulated IAP degradation and generalized translational inhibition. Nature Cell Biology. 4: 439-44. PMID 12021770 DOI: 10.1038/Ncb798  0.664
Low-probability matches (unlikely to be authored by this person)
2022 Yang S, Park D, Manning L, Hill SE, Cao M, Xuan Z, Gonzalez I, Dong Y, Clark B, Shao L, Okeke I, Almoril-Porras A, Bai J, De Camilli P, Colón-Ramos DA. Presynaptic autophagy is coupled to the synaptic vesicle cycle via ATG-9. Neuron. PMID 35065714 DOI: 10.1016/j.neuron.2021.12.031  0.299
2017 Ardiel EL, Kumar A, Marbach J, Christensen R, Gupta R, Duncan W, Daniels JS, Stuurman N, Colón-Ramos D, Shroff H. Visualizing Calcium Flux in Freely Moving Nematode Embryos. Biophysical Journal. 112: 1975-1983. PMID 28494967 DOI: 10.1016/J.Bpj.2017.02.035  0.294
2013 Wu Y, Christensen R, Colón-Ramos D, Shroff H. Advanced optical imaging techniques for neurodevelopment. Current Opinion in Neurobiology. 23: 1090-7. PMID 23831260 DOI: 10.1016/J.Conb.2013.06.008  0.293
2014 Luo L, Wen Q, Ren J, Hendricks M, Gershow M, Qin Y, Greenwood J, Soucy ER, Klein M, Smith-Parker HK, Calvo AC, Colón-Ramos DA, Samuel AD, Zhang Y. Dynamic encoding of perception, memory, and movement in a C. elegans chemotaxis circuit. Neuron. 82: 1115-28. PMID 24908490 DOI: 10.1016/J.Neuron.2014.05.010  0.292
2011 Uniacke J, Colón-Ramos D, Zerges W. FISH and immunofluorescence staining in Chlamydomonas. Methods of Molecular Biology. 714: 15-29. PMID 21431732 DOI: 10.1007/978-1-61779-005-8_2  0.291
2015 Santella A, Catena R, Kovacevic I, Shah P, Yu Z, Marquina-Solis J, Kumar A, Wu Y, Schaff J, Colón-Ramos D, Shroff H, Mohler WA, Bao Z. WormGUIDES: an interactive single cell developmental atlas and tool for collaborative multidimensional data exploration. Bmc Bioinformatics. 16: 189. PMID 26051157 DOI: 10.1186/S12859-015-0627-8  0.29
2022 Yang S, Colón-Ramos DA. Transmembrane protein ATG-9 links presynaptic autophagy with the synaptic vesicle cycle. Autophagy. 1-2. PMID 35349396 DOI: 10.1080/15548627.2022.2049151  0.287
2020 Fan J, Ji T, Wang K, Huang J, Wang M, Manning L, Dong X, Shi Y, Zhang X, Shao Z, Colón-Ramos DA. Author response: A muscle-epidermis-glia signaling axis sustains synaptic specificity during allometric growth in Caenorhabditis elegans Elife. DOI: 10.7554/Elife.55890.Sa2  0.283
2020 Guo M, Li Y, Su Y, Lambert T, Nogare DD, Moyle MW, Duncan LH, Ikegami R, Santella A, Rey-Suarez I, Green D, Beiriger A, Chen J, Vishwasrao H, Ganesan S, et al. Rapid image deconvolution and multiview fusion for optical microscopy. Nature Biotechnology. PMID 32601431 DOI: 10.1038/S41587-020-0560-X  0.283
2016 Kumar A, Christensen R, Guo M, Chandris P, Duncan W, Wu Y, Santella A, Moyle M, Winter PW, Colón-Ramos D, Bao Z, Shroff H. Using Stage- and Slit-Scanning to Improve Contrast and Optical Sectioning in Dual-View Inverted Light Sheet Microscopy (diSPIM). The Biological Bulletin. 231: 26-39. PMID 27638693 DOI: 10.1086/689589  0.272
2013 Wu Y, Wawrzusin P, Senseney J, Fischer RS, Christensen R, Santella A, York AG, Winter PW, Waterman CM, Bao Z, Colón-Ramos DA, McAuliffe M, Shroff H. Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy. Nature Biotechnology. 31: 1032-8. PMID 24108093 DOI: 10.1038/Nbt.2713  0.258
2014 Kumar A, Wu Y, Christensen R, Chandris P, Gandler W, McCreedy E, Bokinsky A, Colón-Ramos DA, Bao Z, McAuliffe M, Rondeau G, Shroff H. Dual-view plane illumination microscopy for rapid and spatially isotropic imaging. Nature Protocols. 9: 2555-73. PMID 25299154 DOI: 10.1038/Nprot.2014.172  0.252
2019 Colón-Ramos DA, La Riviere P, Shroff H, Oldenbourg R. Transforming the development and dissemination of cutting-edge microscopy and computation. Nature Methods. 16: 667-669. PMID 31363203 DOI: 10.1038/S41592-019-0475-Y  0.232
2023 Kochersberger A, Torkashvand MM, Lee D, Baskoylu S, Sengupta T, Koonce N, Emerson CE, Patel NV, Colón-Ramos D, Flavell S, Horvitz HR, Venkatachalam V, Hammarlund M. Programmed Cell Death Modifies Neural Circuits and Tunes Intrinsic Behavior. Biorxiv : the Preprint Server For Biology. PMID 37745399 DOI: 10.1101/2023.09.11.557249  0.23
2015 Christensen RP, Bokinsky A, Santella A, Wu Y, Marquina-Solis J, Guo M, Kovacevic I, Kumar A, Winter PW, Tashakkori N, McCreedy E, Liu H, McAuliffe M, Mohler W, Colón-Ramos DA, et al. Author response: Untwisting the Caenorhabditis elegans embryo Elife. DOI: 10.7554/Elife.10070.058  0.228
2015 Kumar A, Colón-Ramos DA, Shroff H. Watching a roundworm develop with a sheet of light Physics Today. 68: 58-59. DOI: 10.1063/Pt.3.2856  0.227
2023 Almoril-Porras A, Calvo AC, Niu L, Beagan J, Hawk JD, Aljobeh A, Wisdom EM, Ren I, Díaz-García M, Wang ZW, Colón-Ramos DA. Specific configurations of electrical synapses filter sensory information to drive choices in behavior. Biorxiv : the Preprint Server For Biology. PMID 37577611 DOI: 10.1101/2023.08.01.551556  0.206
2024 Rabinowitch I, Colón-Ramos DA, Krieg M. Understanding neural circuit function through synaptic engineering. Nature Reviews. Neuroscience. 25: 131-139. PMID 38172626 DOI: 10.1038/s41583-023-00777-8  0.204
2024 Wolfe AD, Koberstein JN, Smith CB, Stewart ML, Gonzalez IJ, Hammarlund M, Hyman AA, Stork PJS, Goodman RH, Colón-Ramos DA. Local and dynamic regulation of neuronal glycolysis in vivo. Proceedings of the National Academy of Sciences of the United States of America. 121: e2314699121. PMID 38198527 DOI: 10.1073/pnas.2314699121  0.196
2023 Wolfe AD, Koberstein JN, Smith CB, Stewart ML, Hammarlund M, Hyman A, Stork PJ, Goodman R, Colón-Ramos DA. Local and dynamic regulation of neuronal glycolysis . Biorxiv : the Preprint Server For Biology. PMID 37662365 DOI: 10.1101/2023.08.25.554774  0.193
2021 Moyle MW, Barnes KM, Kuchroo M, Gonopolskiy A, Duncan LH, Sengupta T, Shao L, Guo M, Santella A, Christensen R, Kumar A, Wu Y, Moon KR, Wolf G, Krishnaswamy S, et al. Structural and developmental principles of neuropil assembly in C. elegans. Nature. PMID 33627875 DOI: 10.1038/s41586-020-03169-5  0.187
2021 Wu Y, Han X, Su Y, Glidewell M, Daniels JS, Liu J, Sengupta T, Rey-Suarez I, Fischer R, Patel A, Combs C, Sun J, Wu X, Christensen R, Smith C, et al. Multiview confocal super-resolution microscopy. Nature. PMID 34837071 DOI: 10.1038/s41586-021-04110-0  0.177
2021 Hawk JD, Wisdom EM, Sengupta T, Kashlan ZD, Colón-Ramos DA. A genetically encoded tool for reconstituting synthetic modulatory neurotransmission and reconnect neural circuits in vivo. Nature Communications. 12: 4795. PMID 34373460 DOI: 10.1038/s41467-021-24690-9  0.173
2021 Sengupta T, Koonce NL, Vázquez-Martínez N, Moyle MW, Duncan LH, Emerson SE, Han X, Shao L, Wu Y, Santella A, Fan L, Bao Z, Mohler W, Shroff H, Colón-Ramos DA. Differential adhesion regulates neurite placement via a retrograde zippering mechanism. Elife. 10. PMID 34783657 DOI: 10.7554/eLife.71171  0.161
2023 Wu Y, Ding C, Weinreb A, Manning L, Swaim G, Yogev S, Colón-Ramos DA, Hammarlund M. Polarized localization of kinesin-1 and RIC-7 drives axonal mitochondria anterograde transport. Biorxiv : the Preprint Server For Biology. PMID 37502914 DOI: 10.1101/2023.07.12.548706  0.147
2020 Barnes KM, Fan L, Moyle MW, Brittin CA, Xu Y, Colón-Ramos DA, Santella A, Bao Z. Cadherin preserves cohesion across involuting tissues during neurulation. Elife. 9. PMID 33030428 DOI: 10.7554/eLife.58626  0.128
2023 Guo M, Wu Y, Su Y, Qian S, Krueger E, Christensen R, Kroeschell G, Bui J, Chaw M, Zhang L, Liu J, Hou X, Han X, Ma X, Zhovmer A, et al. Deep learning-based aberration compensation improves contrast and resolution in fluorescence microscopy. Biorxiv : the Preprint Server For Biology. PMID 37986950 DOI: 10.1101/2023.10.15.562439  0.109
2022 Li Y, Su Y, Guo M, Han X, Liu J, Vishwasrao HD, Li X, Christensen R, Sengupta T, Moyle MW, Rey-Suarez I, Chen J, Upadhyaya A, Usdin TB, Colón-Ramos DA, et al. Incorporating the image formation process into deep learning improves network performance. Nature Methods. PMID 36316563 DOI: 10.1038/s41592-022-01652-7  0.108
2013 Colón-Ramos D. Daniel Colon-Ramos: observing and making connections. Interview by Caitlin Sedwick. The Journal of Cell Biology. 203: 168-9. PMID 24165932 DOI: 10.1083/jcb.2032pi  0.049
2015 González-Espada W, Díaz-Muñoz G, Feliú-Mójer M, Flores-Otero J, Fortis-Santiago Y, Guerrero-Medina G, López-Casillas M, Colón-Ramos DA, Fernández-Repollet E. Assessing a Science Graduate School Recruitment Symposium. Cuaderno De Investigacion En La Educacion : Serie Especial De Temas Especiales / Universidad De Puerto Rico, Facultad De Educacion, Recinto De Rio Piedras, Centro De Investigaciones Educativas. University of Puerto Rico. Recinto De Rio .... 30: 55-70. PMID 26770074  0.044
2022 Greco V, Politi K, Eisenbarth S, Colón-Ramos D, Giraldez AJ, Bewersdorf J, Berg DN. A group approach to growing as a principal investigator. Current Biology : Cb. 32: R498-R504. PMID 35671717 DOI: 10.1016/j.cub.2022.04.082  0.042
2021 Tilghman S, Alberts B, Colón-Ramos D, Dzirasa K, Kimble J, Varmus H. Concrete steps to diversify the scientific workforce. Science (New York, N.Y.). 372: 133-135. PMID 33833113 DOI: 10.1126/science.abf9679  0.032
2018 Colón-Ramos DA. Statements of Mentorship. Eneuro. 5. PMID 30627634 DOI: 10.1523/ENEURO.0411-18.2018  0.019
2019 Brugnone N, Gonopolskiy A, Moyle MW, Kuchroo M, van Dijk D, Moon KR, Colon-Ramos D, Wolf G, Hirn MJ, Krishnaswamy S. Coarse Graining of Data via Inhomogeneous Diffusion Condensation. Proceedings : ... Ieee International Conference On Big Data. Ieee International Conference On Big Data. 2019: 2624-2633. PMID 32747879 DOI: 10.1109/BigData47090.2019.9006013  0.017
Hide low-probability matches.