| Year |
Citation |
Score |
| 2020 |
Mak WS, Wang X, Arenas R, Cui Y, Bertolani SJ, Deng WQ, Tagkopoulos I, Wilson DK, Siegel JB. Discovery, Design, and Structural Characterization of Alkane Producing Enzymes across the Ferritin-like Superfamily. Biochemistry. PMID 32935984 DOI: 10.1021/Acs.Biochem.0C00665 |
0.327 |
|
| 2020 |
Merchel Piovesan Pereira B, Wang X, Tagkopoulos I. A systems analysis of short and long-term transcriptomic response to biocides. Applied and Environmental Microbiology. PMID 32385082 DOI: 10.1128/AEM.00708-20 |
0.316 |
|
| 2019 |
Kim KJ, Kim M, Adamopoulos I, Tagkopoulos I. Compendium of synovial signatures identifies pathologic characteristics for predicting treatment response in rheumatoid arthritis patients. Clinical Immunology (Orlando, Fla.). PMID 30831253 DOI: 10.1016/j.clim.2019.03.002 |
0.313 |
|
| 2018 |
Rai N, Huynh L, Kim M, Tagkopoulos I. Population collapse and adaptive rescue during long-term chemostat fermentation. Biotechnology and Bioengineering. PMID 30536368 DOI: 10.1002/bit.26898 |
0.327 |
|
| 2018 |
Eetemadi A, Tagkopoulos I. Genetic Neural Networks: An artificial neural network architecture for capturing gene expression relationships. Bioinformatics (Oxford, England). PMID 30452523 DOI: 10.1093/bioinformatics/bty945 |
0.386 |
|
| 2017 |
Bjornson M, Balcke GU, Xiao Y, de Souza A, Wang JZ, Zhabinskaya D, Tagkopoulos I, Tissier A, Dehesh K. Integrated omics analyses of retrograde signaling mutant delineate interrelated stress response strata. The Plant Journal : For Cell and Molecular Biology. PMID 28370892 DOI: 10.1111/Tpj.13547 |
0.327 |
|
| 2016 |
Kim M, Rai N, Zorraquino V, Tagkopoulos I. Multi-omics integration accurately predicts cellular state in unexplored conditions for Escherichia coli. Nature Communications. 7: 13090. PMID 27713404 DOI: 10.1038/ncomms13090 |
0.361 |
|
| 2016 |
Huynh L, Tagkopoulos I. A Parts Database with Consensus Parameter Estimation for Synthetic Circuit Design. Acs Synthetic Biology. PMID 27454439 DOI: 10.1021/acssynbio.5b00205 |
0.303 |
|
| 2015 |
Rai N, Ferreiro A, Neckelmann A, Soon A, Yao A, Siegel J, Facciotti MT, Tagkopoulos I. RiboTALE: A modular, inducible system for accurate gene expression control. Scientific Reports. 5: 10658. PMID 26023068 DOI: 10.1038/Srep10658 |
0.329 |
|
| 2015 |
Kim M, Zorraquino V, Tagkopoulos I. Microbial forensics: predicting phenotypic characteristics and environmental conditions from large-scale gene expression profiles. Plos Computational Biology. 11: e1004127. PMID 25774498 DOI: 10.1371/journal.pcbi.1004127 |
0.378 |
|
| 2015 |
Taylor-Teeples M, Lin L, de Lucas M, Turco G, Toal TW, Gaudinier A, Young NF, Trabucco GM, Veling MT, Lamothe R, Handakumbura PP, Xiong G, Wang C, Corwin J, Tsoukalas A, ... ... Tagkopoulos I, et al. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Nature. 517: 571-5. PMID 25533953 DOI: 10.1038/Nature14099 |
0.355 |
|
| 2014 |
Carrera J, Estrela R, Luo J, Rai N, Tsoukalas A, Tagkopoulos I. An integrative, multi-scale, genome-wide model reveals the phenotypic landscape of Escherichia coli. Molecular Systems Biology. 10: 735. PMID 24987114 DOI: 10.15252/msb.20145108 |
0.395 |
|
| 2013 |
Pavlogiannis A, Mozhayskiy V, Tagkopoulos I. A flood-based information flow analysis and network minimization method for gene regulatory networks. Bmc Bioinformatics. 14: 137. PMID 23617932 DOI: 10.1186/1471-2105-14-137 |
0.355 |
|
| 2013 |
Dragosits M, Mozhayskiy V, Quinones-Soto S, Park J, Tagkopoulos I. Evolutionary potential, cross-stress behavior and the genetic basis of acquired stress resistance in Escherichia coli. Molecular Systems Biology. 9: 643. PMID 23385483 DOI: 10.1038/Msb.2012.76 |
0.304 |
|
| 2012 |
Liang Y, Wu H, Lei R, Chong RA, Wei Y, Lu X, Tagkopoulos I, Kung SY, Yang Q, Hu G, Kang Y. Transcriptional network analysis identifies BACH1 as a master regulator of breast cancer bone metastasis. The Journal of Biological Chemistry. 287: 33533-44. PMID 22875853 DOI: 10.1074/Jbc.M112.392332 |
0.495 |
|
| 2012 |
Mozhayskiy V, Tagkopoulos I. Horizontal gene transfer dynamics and distribution of fitness effects during microbial in silico evolution. Bmc Bioinformatics. 13: S13. PMID 22759418 DOI: 10.1186/1471-2105-13-S10-S13 |
0.352 |
|
| 2012 |
Huynh L, Kececioglu J, Köppe M, Tagkopoulos I. Automatic design of synthetic gene circuits through mixed integer non-linear programming. Plos One. 7: e35529. PMID 22536398 DOI: 10.1371/Journal.Pone.0035529 |
0.321 |
|
| 2008 |
Tagkopoulos I, Liu YC, Tavazoie S. Predictive behavior within microbial genetic networks. Science (New York, N.Y.). 320: 1313-7. PMID 18467556 DOI: 10.3731/Topologica.2.018 |
0.581 |
|
| 2006 |
Kung SY, Mak MW, Tagkopoulos I. Symmetric and asymmetric multi-modality biclustering analysis for microarray data matrix. Journal of Bioinformatics and Computational Biology. 4: 275-98. PMID 16819784 DOI: 10.1142/S0219720006002065 |
0.553 |
|
| 2005 |
Kung SY, Mak MW, Tagkopoulos I. Multi-metric and multi-substructure biclustering analysis for gene expression data. Proceedings / Ieee Computational Systems Bioinformatics Conference, Csb. Ieee Computational Systems Bioinformatics Conference. 123-34. PMID 16447970 DOI: 10.1109/CSB.2005.40 |
0.5 |
|
| 2005 |
Tagkopoulos I, Slavov N, Kung SY. Multi-class biclustering and classification based or modeling of gene regulatory networks Proceedings - Bibe 2005: 5th Ieee Symposium On Bioinformatics and Bioengineering. 2005: 89-96. DOI: 10.1109/BIBE.2005.40 |
0.487 |
|
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