Year |
Citation |
Score |
2023 |
Llorián-Salvador Ó, Akhgar J, Pigorsch S, Borm K, Münch S, Bernhardt D, Rost B, Andrade-Navarro MA, Combs SE, Peeken JC. The importance of planning CT-based imaging features for machine learning-based prediction of pain response. Scientific Reports. 13: 17427. PMID 37833283 DOI: 10.1038/s41598-023-43768-6 |
0.364 |
|
2023 |
Foreman SC, Llorián-Salvador O, David DE, Rösner VKN, Rischewski JF, Feuerriegel GC, Kramp DW, Luiken I, Lohse AK, Kiefer J, Mogler C, Knebel C, Jung M, Andrade-Navarro MA, Rost B, et al. Development and Evaluation of MR-Based Radiogenomic Models to Differentiate Atypical Lipomatous Tumors from Lipomas. Cancers. 15. PMID 37046811 DOI: 10.3390/cancers15072150 |
0.419 |
|
2020 |
Dallago C, Goldberg T, Andrade-Navarro MA, Alanis-Lobato G, Rost B. Visualizing Human Protein-Protein Interactions and Subcellular Localizations on Cell Images Through CellMap. Current Protocols in Bioinformatics. 69: e97. PMID 32150354 DOI: 10.1002/Cpbi.97 |
0.43 |
|
2019 |
El Amrani K, Alanis-Lobato G, Mah N, Kurtz A, Andrade-Navarro MA. Detection of condition-specific marker genes from RNA-seq data with MGFR. Peerj. 7: e6970. PMID 31179178 DOI: 10.7717/peerj.6970 |
0.309 |
|
2017 |
Dallago C, Goldberg T, Andrade-Navarro MA, Alanis-Lobato G, Rost B. CellMap visualizes protein-protein interactions and subcellular localization. F1000research. 6: 1824. PMID 29497493 DOI: 10.12688/F1000Research.12707.2 |
0.439 |
|
2017 |
Ibn-Salem J, Muro EM, Andrade-Navarro MA. Co-regulation of paralog genes in the three-dimensional chromatin architecture. Nucleic Acids Research. 45: 81-91. PMID 27634932 DOI: 10.1093/nar/gkw813 |
0.312 |
|
2015 |
El Amrani K, Stachelscheid H, Lekschas F, Kurtz A, Andrade-Navarro MA. MGFM: a novel tool for detection of tissue and cell specific marker genes from microarray gene expression data. Bmc Genomics. 16: 645. PMID 26314578 DOI: 10.1186/s12864-015-1785-9 |
0.331 |
|
2015 |
Andrade-Navarro M, Perez-Iratxeta C. Text mining of biomedical literature: doing well, but we could be doing better. Methods (San Diego, Calif.). 74: 1-2. PMID 25703199 DOI: 10.1016/j.ymeth.2015.01.014 |
0.591 |
|
2015 |
Fontaine JF, Priller J, Spruth E, Perez-Iratxeta C, Andrade-Navarro MA. Assessment of curated phenotype mining in neuropsychiatric disorder literature. Methods (San Diego, Calif.). 74: 90-6. PMID 25484337 DOI: 10.1016/j.ymeth.2014.11.022 |
0.624 |
|
2013 |
Fournier D, Palidwor GA, Shcherbinin S, Szengel A, Schaefer MH, Perez-Iratxeta C, Andrade-Navarro MA. Functional and genomic analyses of alpha-solenoid proteins. Plos One. 8: e79894. PMID 24278209 DOI: 10.1371/journal.pone.0079894 |
0.605 |
|
2013 |
Andrade-Navarro MA, Kanji F, Palii CG, Brand M, Atkins H, Perez-Iratxeta C. A method for cell type marker discovery by high-throughput gene expression analysis of mixed cell populations. Bmc Biotechnology. 13: 80. PMID 24090206 DOI: 10.1186/1472-6750-13-80 |
0.654 |
|
2013 |
Schaefer MH, Lopes TJ, Mah N, Shoemaker JE, Matsuoka Y, Fontaine JF, Louis-Jeune C, Eisfeld AJ, Neumann G, Perez-Iratxeta C, Kawaoka Y, Kitano H, Andrade-Navarro MA. Adding protein context to the human protein-protein interaction network to reveal meaningful interactions. Plos Computational Biology. 9: e1002860. PMID 23300433 DOI: 10.1371/Journal.Pcbi.1002860 |
0.659 |
|
2012 |
Andrade-Navarro MA, Palidwor GA, Perez-Iratxeta C. Peer2ref: a peer-reviewer finding web tool that uses author disambiguation. Biodata Mining. 5: 14. PMID 22958760 DOI: 10.1186/1756-0381-5-14 |
0.607 |
|
2012 |
McNeill B, Perez-Iratxeta C, Mazerolle C, Furimsky M, Mishina Y, Andrade-Navarro MA, Wallace VA. Comparative genomics identification of a novel set of temporally regulated hedgehog target genes in the retina. Molecular and Cellular Neurosciences. 49: 333-40. PMID 22281533 DOI: 10.1016/J.Mcn.2011.12.008 |
0.651 |
|
2012 |
Louis-Jeune C, Andrade-Navarro MA, Perez-Iratxeta C. Prediction of protein secondary structure from circular dichroism using theoretically derived spectra. Proteins. 80: 374-81. PMID 22095872 DOI: 10.1002/prot.23188 |
0.612 |
|
2011 |
Donnard E, Barbosa-Silva A, Guedes RL, Fernandes GR, Velloso H, Kohn MJ, Andrade-Navarro MA, Ortega JM. Preimplantation development regulatory pathway construction through a text-mining approach. Bmc Genomics. 12: S3. PMID 22369103 DOI: 10.1186/1471-2164-12-S4-S3 |
0.524 |
|
2011 |
Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, ... ... Andrade-Navarro MA, et al. The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. Bmc Bioinformatics. 12: S3. PMID 22151929 DOI: 10.1186/1471-2105-12-S8-S3 |
0.415 |
|
2010 |
Mah N, Perez-Iratxeta C, Andrade-Navarro MA. Outer membrane pore protein prediction in mycobacteria using genomic comparison. Microbiology (Reading, England). 156: 2506-15. PMID 20466765 DOI: 10.1099/mic.0.040089-0 |
0.624 |
|
2010 |
Barbosa-Silva A, Soldatos TG, Magalhães IL, Pavlopoulos GA, Fontaine JF, Andrade-Navarro MA, Schneider R, Ortega JM. LAITOR--Literature Assistant for Identification of Terms co-Occurrences and Relationships. Bmc Bioinformatics. 11: 70. PMID 20122157 DOI: 10.1186/1471-2105-11-70 |
0.499 |
|
2009 |
Tiffin N, Andrade-Navarro MA, Perez-Iratxeta C. Linking genes to diseases: it's all in the data. Genome Medicine. 1: 77. PMID 19678910 DOI: 10.1186/gm77 |
0.693 |
|
2009 |
Sandie R, Palidwor GA, Huska MR, Porter CJ, Krzyzanowski PM, Muro EM, Perez-Iratxeta C, Andrade-Navarro MA. Recent developments in StemBase: a tool to study gene expression in human and murine stem cells. Bmc Research Notes. 2: 39. PMID 19284540 DOI: 10.1186/1756-0500-2-39 |
0.681 |
|
2008 |
Tremblay K, Lemire M, Potvin C, Tremblay A, Hunninghake GM, Raby BA, Hudson TJ, Perez-Iratxeta C, Andrade-Navarro MA, Laprise C. Genes to diseases (G2D) computational method to identify asthma candidate genes. Plos One. 3: e2907. PMID 18682798 DOI: 10.1371/Journal.Pone.0002907 |
0.649 |
|
2008 |
Tiffin N, Okpechi I, Perez-Iratxeta C, Andrade-Navarro MA, Ramesar R. Prioritization of candidate disease genes for metabolic syndrome by computational analysis of its defining phenotypes. Physiological Genomics. 35: 55-64. PMID 18612082 DOI: 10.1152/physiolgenomics.90247.2008 |
0.662 |
|
2008 |
Perez-Iratxeta C, Andrade-Navarro MA. K2D2: estimation of protein secondary structure from circular dichroism spectra. Bmc Structural Biology. 8: 25. PMID 18477405 DOI: 10.1186/1472-6807-8-25 |
0.612 |
|
2008 |
Krzyzanowski PM, Andrade-Navarro MA. Identification of novel stem cell markers using gap analysis of gene expression data. Genome Biology. 8: R193. PMID 17875203 DOI: 10.1186/gb-2007-8-9-r193 |
0.31 |
|
2007 |
Porter CJ, Palidwor GA, Sandie R, Krzyzanowski PM, Muro EM, Perez-Iratxeta C, Andrade-Navarro MA. StemBase: a resource for the analysis of stem cell gene expression data. Methods in Molecular Biology (Clifton, N.J.). 407: 137-48. PMID 18453254 DOI: 10.1007/978-1-59745-536-7_11 |
0.67 |
|
2007 |
Perez-Iratxeta C, Palidwor G, Andrade-Navarro MA. Towards completion of the Earth's proteome. Embo Reports. 8: 1135-41. PMID 18059312 DOI: 10.1038/Sj.Embor.7401117 |
0.622 |
|
2007 |
Grenier G, Scimè A, Le Grand F, Asakura A, Perez-Iratxeta C, Andrade-Navarro MA, Labosky PA, Rudnicki MA. Resident endothelial precursors in muscle, adipose, and dermis contribute to postnatal vasculogenesis. Stem Cells (Dayton, Ohio). 25: 3101-10. PMID 17823241 DOI: 10.1634/Stemcells.2006-0795 |
0.592 |
|
2007 |
Campbell PA, Perez-Iratxeta C, Andrade-Navarro MA, Rudnicki MA. Oct4 targets regulatory nodes to modulate stem cell function. Plos One. 2: e553. PMID 17579724 DOI: 10.1371/Journal.Pone.0000553 |
0.66 |
|
2007 |
Perez-Iratxeta C, Bork P, Andrade-Navarro MA. Update of the G2D tool for prioritization of gene candidates to inherited diseases. Nucleic Acids Research. 35: W212-6. PMID 17478516 DOI: 10.1093/nar/gkm223 |
0.714 |
|
2007 |
Hailesellasse Sene K, Porter CJ, Palidwor G, Perez-Iratxeta C, Muro EM, Campbell PA, Rudnicki MA, Andrade-Navarro MA. Gene function in early mouse embryonic stem cell differentiation. Bmc Genomics. 8: 85. PMID 17394647 DOI: 10.1186/1471-2164-8-85 |
0.688 |
|
2007 |
Perez-Iratxeta C, Andrade-Navarro MA, Wren JD. Evolving research trends in bioinformatics. Briefings in Bioinformatics. 8: 88-95. PMID 17077138 DOI: 10.1093/Bib/Bbl035 |
0.621 |
|
2006 |
Tiffin N, Adie E, Turner F, Brunner HG, van Driel MA, Oti M, Lopez-Bigas N, Ouzounis C, Perez-Iratxeta C, Andrade-Navarro MA, Adeyemo A, Patti ME, Semple CA, Hide W. Computational disease gene identification: a concert of methods prioritizes type 2 diabetes and obesity candidate genes. Nucleic Acids Research. 34: 3067-81. PMID 16757574 DOI: 10.1093/Nar/Gkl381 |
0.676 |
|
2006 |
Muro EM, Perez-Iratxeta C, Andrade-Navarro MA. Amplification of the Gene Ontology annotation of Affymetrix probe sets. Bmc Bioinformatics. 7: 159. PMID 16549014 DOI: 10.1186/1471-2105-7-159 |
0.665 |
|
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