Venkata Satagopam - Publications

Structural and Computational Biology European Molecular Biology Laboratory (EMBL), Heidelberg, Baden-Württemberg, Germany 

32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Becker R, Alper P, Grouès V, Munoz S, Jarosz Y, Lebioda J, Rege K, Trefois C, Satagopam V, Schneider R. DAISY: A Data Information System for accountability under the General Data Protection Regulation. Gigascience. 8. PMID 31800037 DOI: 10.1093/gigascience/giz140  0.56
2019 Gu W, Yildirimman R, Van der Stuyft E, Verbeeck D, Herzinger S, Satagopam V, Barbosa-Silva A, Schneider R, Lange B, Lehrach H, Guo Y, Henderson D, Rowe A. Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium. Bmc Bioinformatics. 20: 164. PMID 30935364 DOI: 10.1186/s12859-019-2748-y  0.64
2018 Hipp G, Vaillant M, Diederich NJ, Roomp K, Satagopam VP, Banda P, Sandt E, Mommaerts K, Schmitz SK, Longhino L, Schweicher A, Hanff AM, Nicolai B, Kolber P, Reiter D, et al. The Luxembourg Parkinson's Study: A Comprehensive Approach for Stratification and Early Diagnosis. Frontiers in Aging Neuroscience. 10: 326. PMID 30420802 DOI: 10.3389/fnagi.2018.00326  0.56
2018 Barbosa-Silva A, Bratfalean D, Gu W, Satagopam V, Houston P, Becnel LB, Eifes S, Richard F, Tielmann A, Herzinger S, Rege K, Balling R, Peeters P, Schneider R. Presenting and Sharing Clinical Data using the eTRIKS Standards Master Tree for tranSMART. Bioinformatics (Oxford, England). PMID 30256906 DOI: 10.1093/bioinformatics/bty809  0.64
2018 Herzinger S, Grouès V, Gu W, Satagopam V, Banda P, Trefois C, Schneider R. Fractalis: A scalable open-source service for platform-independent interactive visual analysis of biomedical data. Gigascience. PMID 30165440 DOI: 10.1093/gigascience/giy109  0.56
2017 Roomp K, Kristinsson H, Schvartz D, Ubhayasekera K, Sargsyan E, Manukyan L, Chowdhury A, Manell H, Satagopam V, Groebe K, Schneider R, Bergquist J, Sanchez JC, Bergsten P. Combined lipidomic and proteomic analysis of isolated human islets exposed to palmitate reveals time-dependent changes in insulin secretion and lipid metabolism. Plos One. 12: e0176391. PMID 28448538 DOI: 10.1371/journal.pone.0176391  0.56
2017 Herzinger S, Gu W, Satagopam V, Eifes S, Rege K, Barbosa Da Silva A, Schneider R. SmartR: An open-source platform for interactive visual analytics for translational research data. Bioinformatics (Oxford, England). PMID 28334291 DOI: 10.1093/bioinformatics/btx137  0.56
2016 Gawron P, Ostaszewski M, Satagopam V, Gebel S, Mazein A, Kuzma M, Zorzan S, McGee F, Otjacques B, Balling R, Schneider R. MINERVA-a platform for visualization and curation of molecular interaction networks. Npj Systems Biology and Applications. 2: 16020. PMID 28725475 DOI: 10.1038/npjsba.2016.20  0.56
2016 Satagopam V, Gu W, Eifes S, Gawron P, Ostaszewski M, Gebel S, Barbosa-Silva A, Balling R, Schneider R. Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases. Big Data. 4: 97-108. PMID 27441714 DOI: 10.1089/big.2015.0057  0.64
2015 Ramilowski JA, Goldberg T, Harshbarger J, Kloppman E, Lizio M, Satagopam VP, Itoh M, Kawaji H, Carninci P, Rost B, Forrest AR. A draft network of ligand-receptor-mediated multicellular signalling in human. Nature Communications. 6: 7866. PMID 26198319 DOI: 10.1038/ncomms8866  0.64
2015 Bahlawane C, Eulenfeld R, Wiesinger MY, Wang J, Muller A, Girod A, Nazarov PV, Felsch K, Vallar L, Sauter T, Satagopam VP, Haan S. Constitutive activation of oncogenic PDGFRα-mutant proteins occurring in GIST patients induces receptor mislocalisation and alters PDGFRα signalling characteristics. Cell Communication and Signaling : Ccs. 13: 21. PMID 25880691 DOI: 10.1186/s12964-015-0096-8  0.64
2015 Jimenez-Sanchez M, Lam W, Hannus M, Sönnichsen B, Imarisio S, Fleming A, Tarditi A, Menzies F, Ed Dami T, Xu C, Gonzalez-Couto E, Lazzeroni G, Heitz F, Diamanti D, Massai L, ... Satagopam VP, et al. siRNA screen identifies QPCT as a druggable target for Huntington's disease. Nature Chemical Biology. 11: 347-54. PMID 25848931 DOI: 10.1038/nchembio.1790  0.64
2015 Papanikolaou N, Pavlopoulos GA, Pafilis E, Theodosiou T, Schneider R, Satagopam VP, Ouzounis CA, Eliopoulos AG, Promponas VJ, Iliopoulos I. BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. Bioinformatics (Oxford, England). 31: 979. PMID 25673338 DOI: 10.1093/bioinformatics/btv029  0.64
2014 Davey NE, Satagopam VP, Santiago-Mozos S, Villacorta-Martin C, Bharat TA, Schneider R, Briggs JA. The HIV mutation browser: a resource for human immunodeficiency virus mutagenesis and polymorphism data. Plos Computational Biology. 10: e1003951. PMID 25474213 DOI: 10.1371/journal.pcbi.1003951  0.64
2014 Papanikolaou N, Pavlopoulos GA, Pafilis E, Theodosiou T, Schneider R, Satagopam VP, Ouzounis CA, Eliopoulos AG, Promponas VJ, Iliopoulos I. BioTextQuest(+): a knowledge integration platform for literature mining and concept discovery. Bioinformatics (Oxford, England). 30: 3249-56. PMID 25100685 DOI: 10.1093/bioinformatics/btu524  0.64
2014 Fujita KA, Ostaszewski M, Matsuoka Y, Ghosh S, Glaab E, Trefois C, Crespo I, Perumal TM, Jurkowski W, Antony PM, Diederich N, Buttini M, Kodama A, Satagopam VP, Eifes S, et al. Integrating pathways of Parkinson's disease in a molecular interaction map. Molecular Neurobiology. 49: 88-102. PMID 23832570 DOI: 10.1007/s12035-013-8489-4  0.64
2013 de Ridder J, Bromberg Y, Michaut M, Satagopam VP, Corpas M, MacIntyre G, Alexandrov T. The young PI buzz: learning from the organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013. Plos Computational Biology. 9: e1003350. PMID 24244148 DOI: 10.1371/journal.pcbi.1003350  0.64
2013 Bali KK, Venkataramani V, Satagopam VP, Gupta P, Schneider R, Kuner R. Transcriptional mechanisms underlying sensitization of peripheral sensory neurons by granulocyte-/granulocyte-macrophage colony stimulating factors. Molecular Pain. 9: 48. PMID 24067145 DOI: 10.1186/1744-8069-9-48  0.64
2013 Bali KK, Selvaraj D, Satagopam VP, Lu J, Schneider R, Kuner R. Genome-wide identification and functional analyses of microRNA signatures associated with cancer pain. Embo Molecular Medicine. 5: 1740-58. PMID 24039159 DOI: 10.1002/emmm.201302797  0.64
2013 Chowdhury A, Satagopam VP, Manukyan L, Artemenko KA, Fung YM, Schneider R, Bergquist J, Bergsten P. Signaling in insulin-secreting MIN6 pseudoislets and monolayer cells. Journal of Proteome Research. 12: 5954-62. PMID 24006944 DOI: 10.1021/pr400864w  0.64
2013 Katayama T, Wilkinson MD, Micklem G, Kawashima S, Yamaguchi A, Nakao M, Yamamoto Y, Okamoto S, Oouchida K, Chun HW, Aerts J, Afzal H, Antezana E, Arakawa K, Aranda B, ... ... Satagopam VP, et al. The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies. Journal of Biomedical Semantics. 4: 6. PMID 23398680 DOI: 10.1186/2041-1480-4-6  0.64
2013 Simonetti M, Hagenston AM, Vardeh D, Freitag HE, Mauceri D, Lu J, Satagopam VP, Schneider R, Costigan M, Bading H, Kuner R. Nuclear calcium signaling in spinal neurons drives a genomic program required for persistent inflammatory pain. Neuron. 77: 43-57. PMID 23312515 DOI: 10.1016/j.neuron.2012.10.037  0.64
2013 de Ridder J, Abeel T, Michaut M, Satagopam VP, Gehlenborg N. Don't Wear Your New Shoes (Yet): Taking the Right Steps to Become a Successful Principal Investigator Plos Computational Biology. 9. DOI: 10.1371/journal.pcbi.1002834  0.64
2013 Pafilis E, Pavlopoulos GA, Satagopam VP, Papanikolaou N, Horn H, Arvanitidis C, Jensen LJ, Schneider R, Iliopoulos I. OnTheFly 2.0: A tool for automatic annotation of files and biological information extraction 13th Ieee International Conference On Bioinformatics and Bioengineering, Ieee Bibe 2013. DOI: 10.1109/BIBE.2013.6701679  0.64
2012 Soldatos TG, O'Donoghue SI, Satagopam VP, Barbosa-Silva A, Pavlopoulos GA, Wanderley-Nogueira AC, Soares-Cavalcanti NM, Schneider R. Caipirini: using gene sets to rank literature. Biodata Mining. 5: 1. PMID 22297131 DOI: 10.1186/1756-0381-5-1  0.64
2010 Satagopam VP, Theodoropoulou MC, Stampolakis CK, Pavlopoulos GA, Papandreou NC, Bagos PG, Schneider R, Hamodrakas SJ. GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques. Database : the Journal of Biological Databases and Curation. 2010: baq019. PMID 20689020 DOI: 10.1093/database/baq019  0.64
2010 Marji J, O'Donoghue SI, McClintock D, Satagopam VP, Schneider R, Ratner D, Worman HJ, Gordon LB, Djabali K. Defective lamin A-Rb signaling in Hutchinson-Gilford Progeria Syndrome and reversal by farnesyltransferase inhibition. Plos One. 5: e11132. PMID 20559568 DOI: 10.1371/journal.pone.0011132  0.64
2010 Neumann B, Walter T, Hériché JK, Bulkescher J, Erfle H, Conrad C, Rogers P, Poser I, Held M, Liebel U, Cetin C, Sieckmann F, Pau G, Kabbe R, Wünsche A, ... Satagopam V, et al. Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes. Nature. 464: 721-7. PMID 20360735 DOI: 10.1038/nature08869  0.64
2010 Soldatos TG, O'Donoghue SI, Satagopam VP, Jensen LJ, Brown NP, Barbosa-Silva A, Schneider R. Martini: using literature keywords to compare gene sets. Nucleic Acids Research. 38: 26-38. PMID 19858102 DOI: 10.1093/nar/gkp876  0.64
2010 O'Donoghue SI, Horn H, Pafilis E, Haag S, Kuhn M, Satagopam VP, Schneider R, Jensen LJ. Reflect: A practical approach to web semantics Journal of Web Semantics. 8: 182-189. DOI: 10.1016/j.websem.2010.03.003  0.64
2008 Pavlopoulos GA, O'Donoghue SI, Satagopam VP, Soldatos TG, Pafilis E, Schneider R. Arena3D: visualization of biological networks in 3D. Bmc Systems Biology. 2: 104. PMID 19040715 DOI: 10.1186/1752-0509-2-104  0.64
2008 Barbosa-Silva A, Satagopam VP, Schneider R, Ortega JM. Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence. Bmc Bioinformatics. 9: 141. PMID 18321373 DOI: 10.1186/1471-2105-9-141  0.64
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