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Nick Luscombe - Publications

Affiliations: 
European Bioinformatics Institute, Hinxton, England, United Kingdom 
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41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Schoenfelder S, Sugar R, Dimond A, Javierre BM, Armstrong H, Mifsud B, Dimitrova E, Matheson L, Tavares-Cadete F, Furlan-Magaril M, Segonds-Pichon A, Jurkowski W, Wingett SW, Tabbada K, Andrews S, ... ... Luscombe NM, et al. Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome. Nature Genetics. 47: 1179-86. PMID 26323060 DOI: 10.1038/Ng.3393  0.726
2015 Mifsud B, Tavares-Cadete F, Young AN, Sugar R, Schoenfelder S, Ferreira L, Wingett SW, Andrews S, Grey W, Ewels PA, Herman B, Happe S, Higgs A, LeProust E, Follows GA, ... ... Luscombe NM, et al. Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C. Nature Genetics. 47: 598-606. PMID 25938943 DOI: 10.1038/Ng.3286  0.707
2015 Schoenfelder S, Furlan-Magaril M, Mifsud B, Tavares-Cadete F, Sugar R, Javierre BM, Nagano T, Katsman Y, Sakthidevi M, Wingett SW, Dimitrova E, Dimond A, Edelman LB, Elderkin S, Tabbada K, ... ... Luscombe NM, et al. The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements. Genome Research. 25: 582-97. PMID 25752748 DOI: 10.1101/Gr.185272.114  0.726
2015 Schoenfelder S, Sugar R, Dimond A, Javierre BM, Armstrong H, Mifsud B, Dimitrova E, Matheson L, Tavares-Cadete F, Furlan-Magaril M, Segonds-Pichon A, Jurkowski W, Wingett SW, Tabbada K, Andrews S, ... ... Luscombe NM, et al. Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome Nature Genetics. DOI: 10.1038/ng.3393  0.726
2014 Castelnuovo M, Zaugg JB, Guffanti E, Maffioletti A, Camblong J, Xu Z, Clauder-Münster S, Steinmetz LM, Luscombe NM, Stutz F. Role of histone modifications and early termination in pervasive transcription and antisense-mediated gene silencing in yeast. Nucleic Acids Research. 42: 4348-62. PMID 24497191 DOI: 10.1093/Nar/Gku100  0.443
2014 Harding JL, Horswell S, Heliot C, Armisen J, Zimmerman LB, Luscombe NM, Miska EA, Hill CS. Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements. Genome Research. 24: 96-106. PMID 24065776 DOI: 10.1101/Gr.144469.112  0.395
2013 Ilsley GR, Fisher J, Apweiler R, De Pace AH, Luscombe NM. Cellular resolution models for even skipped regulation in the entire Drosophila embryo. Elife. 2: e00522. PMID 23930223 DOI: 10.7554/Elife.00522  0.459
2013 Ilik IA, Quinn JJ, Georgiev P, Tavares-Cadete F, Maticzka D, Toscano S, Wan Y, Spitale RC, Luscombe N, Backofen R, Chang HY, Akhtar A. Tandem stem-loops in roX RNAs act together to mediate X chromosome dosage compensation in Drosophila. Molecular Cell. 51: 156-73. PMID 23870142 DOI: 10.1016/J.Molcel.2013.07.001  0.648
2013 Zarnack K, König J, Tajnik M, Martincorena I, Eustermann S, Stévant I, Reyes A, Anders S, Luscombe NM, Ule J. Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements. Cell. 152: 453-66. PMID 23374342 DOI: 10.1016/j.cell.2012.12.023  0.341
2012 Tan-Wong SM, Zaugg JB, Camblong J, Xu Z, Zhang DW, Mischo HE, Ansari AZ, Luscombe NM, Steinmetz LM, Proudfoot NJ. Gene loops enhance transcriptional directionality. Science (New York, N.Y.). 338: 671-5. PMID 23019609 DOI: 10.1126/Science.1224350  0.482
2012 Conrad T, Cavalli FM, Vaquerizas JM, Luscombe NM, Akhtar A. Drosophila dosage compensation involves enhanced Pol II recruitment to male X-linked promoters. Science (New York, N.Y.). 337: 742-6. PMID 22821985 DOI: 10.1126/science.1221428  0.313
2012 Lam KC, Mühlpfordt F, Vaquerizas JM, Raja SJ, Holz H, Luscombe NM, Manke T, Akhtar A. The NSL complex regulates housekeeping genes in Drosophila. Plos Genetics. 8: e1002736. PMID 22723752 DOI: 10.1371/journal.pgen.1002736  0.512
2012 Conrad T, Cavalli FM, Holz H, Hallacli E, Kind J, Ilik I, Vaquerizas JM, Luscombe NM, Akhtar A. The MOF chromobarrel domain controls genome-wide H4K16 acetylation and spreading of the MSL complex. Developmental Cell. 22: 610-24. PMID 22421046 DOI: 10.1016/j.devcel.2011.12.016  0.39
2012 Prieto AI, Kahramanoglou C, Ali RM, Fraser GM, Seshasayee AS, Luscombe NM. Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12. Nucleic Acids Research. 40: 3524-37. PMID 22180530 DOI: 10.1093/nar/gkr1236  0.305
2012 Vaquerizas JM, Teichmann SA, Luscombe NM. How do you find transcription factors? Computational approaches to compile and annotate repertoires of regulators for any genome. Methods in Molecular Biology (Clifton, N.J.). 786: 3-19. PMID 21938617 DOI: 10.1007/978-1-61779-292-2_1  0.457
2012 Zaugg JB, Luscombe NM. A genomic model of condition-specific nucleosome behavior explains transcriptional activity in yeast. Genome Research. 22: 84-94. PMID 21930892 DOI: 10.1101/gr.124099.111  0.505
2011 König J, Zarnack K, Luscombe NM, Ule J. Protein-RNA interactions: new genomic technologies and perspectives. Nature Reviews. Genetics. 13: 77-83. PMID 22251872 DOI: 10.1038/nrg3141  0.316
2011 Cavalli FM, Bourgon R, Huber W, Vaquerizas JM, Luscombe NM. SpeCond: a method to detect condition-specific gene expression. Genome Biology. 12: R101. PMID 22008066 DOI: 10.1186/gb-2011-12-10-r101  0.316
2011 Konig J, Zarnack K, Rot G, Curk T, Kayikci M, Zupan B, Turner DJ, Luscombe NM, Ule J. iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution. Journal of Visualized Experiments : Jove. PMID 21559008 DOI: 10.3791/2638  0.344
2011 Seshasayee AS, Sivaraman K, Luscombe NM. An overview of prokaryotic transcription factors : a summary of function and occurrence in bacterial genomes. Sub-Cellular Biochemistry. 52: 7-23. PMID 21557077 DOI: 10.1007/978-90-481-9069-0_2  0.335
2011 Ermakova O, Piszczek L, Luciani L, Cavalli FM, Ferreira T, Farley D, Rizzo S, Paolicelli RC, Al-Banchaabouchi M, Nerlov C, Moriggl R, Luscombe NM, Gross C. Sensitized phenotypic screening identifies gene dosage sensitive region on chromosome 11 that predisposes to disease in mice. Embo Molecular Medicine. 3: 50-66. PMID 21204268 DOI: 10.1002/emmm.201000112  0.307
2011 Kahramanoglou C, Seshasayee AS, Prieto AI, Ibberson D, Schmidt S, Zimmermann J, Benes V, Fraser GM, Luscombe NM. Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli. Nucleic Acids Research. 39: 2073-91. PMID 21097887 DOI: 10.1093/nar/gkq934  0.341
2010 Raja SJ, Charapitsa I, Conrad T, Vaquerizas JM, Gebhardt P, Holz H, Kadlec J, Fraterman S, Luscombe NM, Akhtar A. The nonspecific lethal complex is a transcriptional regulator in Drosophila. Molecular Cell. 38: 827-41. PMID 20620954 DOI: 10.1016/j.molcel.2010.05.021  0.464
2009 Vaquerizas JM, Kummerfeld SK, Teichmann SA, Luscombe NM. A census of human transcription factors: function, expression and evolution. Nature Reviews. Genetics. 10: 252-63. PMID 19274049 DOI: 10.1038/Nrg2538  0.441
2008 Kind J, Vaquerizas JM, Gebhardt P, Gentzel M, Luscombe NM, Bertone P, Akhtar A. Genome-wide analysis reveals MOF as a key regulator of dosage compensation and gene expression in Drosophila. Cell. 133: 813-28. PMID 18510926 DOI: 10.1016/J.Cell.2008.04.036  0.503
2008 Pearson MM, Sebaihia M, Churcher C, Quail MA, Seshasayee AS, Luscombe NM, Abdellah Z, Arrosmith C, Atkin B, Chillingworth T, Hauser H, Jagels K, Moule S, Mungall K, Norbertczak H, et al. Complete genome sequence of uropathogenic Proteus mirabilis, a master of both adherence and motility. Journal of Bacteriology. 190: 4027-37. PMID 18375554 DOI: 10.1128/Jb.01981-07  0.352
2006 Seshasayee AS, Bertone P, Fraser GM, Luscombe NM. Transcriptional regulatory networks in bacteria: from input signals to output responses. Current Opinion in Microbiology. 9: 511-9. PMID 16942903 DOI: 10.1016/J.Mib.2006.08.007  0.37
2006 Balaji S, Babu MM, Iyer LM, Luscombe NM, Aravind L. Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast. Journal of Molecular Biology. 360: 213-27. PMID 16762362 DOI: 10.1016/j.jmb.2006.04.029  0.42
2005 Teichmann SA, Bornberg-Bauer E, Luscombe NM. Transcriptional networking. Genome Biology. 6: 344. PMID 16168097 DOI: 10.1186/gb-2005-6-9-344  0.342
2004 Luscombe NM, Babu MM. GenCompass: a universal system for analysing gene expression for any genome. Trends in Biotechnology. 22: 552-5. PMID 15491796 DOI: 10.1016/j.tibtech.2004.08.013  0.368
2004 Luscombe NM, Babu MM, Yu H, Snyder M, Teichmann SA, Gerstein M. Genomic analysis of regulatory network dynamics reveals large topological changes. Nature. 431: 308-12. PMID 15372033 DOI: 10.1038/Nature02782  0.439
2004 Babu MM, Luscombe NM, Aravind L, Gerstein M, Teichmann SA. Structure and evolution of transcriptional regulatory networks. Current Opinion in Structural Biology. 14: 283-91. PMID 15193307 DOI: 10.1016/J.Sbi.2004.05.004  0.48
2004 Euskirchen G, Royce TE, Bertone P, Martone R, Rinn JL, Nelson FK, Sayward F, Luscombe NM, Miller P, Gerstein M, Weissman S, Snyder M. CREB binds to multiple loci on human chromosome 22. Molecular and Cellular Biology. 24: 3804-14. PMID 15082775 DOI: 10.1128/Mcb.24.9.3804-3814.2004  0.365
2003 Qian J, Lin J, Luscombe NM, Yu H, Gerstein M. Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data. Bioinformatics (Oxford, England). 19: 1917-26. PMID 14555624 DOI: 10.1093/Bioinformatics/Btg347  0.464
2003 Martone R, Euskirchen G, Bertone P, Hartman S, Royce TE, Luscombe NM, Rinn JL, Nelson FK, Miller P, Gerstein M, Weissman S, Snyder M. Distribution of NF-kappaB-binding sites across human chromosome 22. Proceedings of the National Academy of Sciences of the United States of America. 100: 12247-52. PMID 14527995 DOI: 10.1073/Pnas.2135255100  0.365
2003 Yu H, Luscombe NM, Qian J, Gerstein M. Genomic analysis of gene expression relationships in transcriptional regulatory networks. Trends in Genetics : Tig. 19: 422-7. PMID 12902159 DOI: 10.1016/S0168-9525(03)00175-6  0.48
2003 Rinn JL, Euskirchen G, Bertone P, Martone R, Luscombe NM, Hartman S, Harrison PM, Nelson FK, Miller P, Gerstein M, Weissman S, Snyder M. The transcriptional activity of human Chromosome 22. Genes & Development. 17: 529-40. PMID 12600945 DOI: 10.1101/Gad.1055203  0.35
2002 Horak CE, Luscombe NM, Qian J, Bertone P, Piccirrillo S, Gerstein M, Snyder M. Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae. Genes & Development. 16: 3017-33. PMID 12464632 DOI: 10.1101/Gad.1039602  0.392
2002 Horak CE, Mahajan MC, Luscombe NM, Gerstein M, Weissman SM, Snyder M. GATA-1 binding sites mapped in the beta-globin locus by using mammalian chIp-chip analysis. Proceedings of the National Academy of Sciences of the United States of America. 99: 2924-9. PMID 11867748 DOI: 10.1073/Pnas.052706999  0.371
2002 Harrison PM, Hegyi H, Balasubramanian S, Luscombe NM, Bertone P, Echols N, Johnson T, Gerstein M. Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22. Genome Research. 12: 272-80. PMID 11827946 DOI: 10.1101/Gr.207102  0.311
2001 Greenbaum D, Luscombe NM, Jansen R, Qian J, Gerstein M. Interrelating different types of genomic data, from proteome to secretome: 'oming in on function. Genome Research. 11: 1463-8. PMID 11544189 DOI: 10.1101/Gr.207401  0.302
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