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Jeremy R. Knowles - Related publications

Affiliations: 
Harvard University, Cambridge, MA, United States 
Area:
enzyme catalysis
Website:
http://www.thecrimson.com/article/2008/4/4/jeremy-r-knowles-jeremy-r-knowles/
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Li Q, Pan Y, Li H, Lenertz M, Reed K, Jordahl D, Bjerke T, Ugrinov A, Chen B, Yang Z. Cascade/Parallel Biocatalysis via Multi-enzyme Encapsulation on Metal-Organic Materials for Rapid and Sustainable Biomass Degradation. Acs Applied Materials & Interfaces. PMID 34478257 DOI: 10.1021/acsami.1c12209   
2021 Wang Y, Mittermaier AK. Characterizing Bi-substrate Enzyme Kinetics at High Resolution by 2D-ITC. Analytical Chemistry. PMID 34514786 DOI: 10.1021/acs.analchem.1c02705   
2021 Jia Q, Zeng H, Li H, Xiao N, Tang J, Gao S, Zhang J, Xie W. The C-terminal loop of guanosine deaminase is essential to catalysis. Chemical Communications (Cambridge, England). PMID 34477187 DOI: 10.1039/d1cc03042f   
2021 Kummer MJ, Lee YS, Yuan M, Alkotaini B, Zhao J, Blumenthal E, Minteer SD. Substrate Channeling by a Rationally Designed Fusion Protein in a Biocatalytic Cascade. Jacs Au. 1: 1187-1197. PMID 34467357 DOI: 10.1021/jacsau.1c00180   
2021 Somma V, Calvio C, Rabuffetti M, Rama E, Speranza G, Morelli CF. An overall framework for the E. coli γ-glutamyltransferase-catalyzed transpeptidation reactions. Bioorganic Chemistry. 115: 105217. PMID 34364051 DOI: 10.1016/j.bioorg.2021.105217   
2021 Chao RR, Lau IC, Coleman T, Churchman LR, Child SA, Lee JHZ, Bruning JB, De Voss JJ, Bell SG. The stereoselective oxidation of para-substituted benzenes by a cytochrome P450 biocatalyst. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 34350662 DOI: 10.1002/chem.202102757   
2021 Guo J, Wang Y, Gao W, Wang X, Gao X, Man Z, Cai Z, Qing Q. Gene Cloning, Functional Expression, and Characterization of a Novel GH46 Chitosanase from Streptomyces avermitilis (SaCsn46A). Applied Biochemistry and Biotechnology. PMID 34542822 DOI: 10.1007/s12010-021-03687-6   
2021 Bose I, Zhao Y. Selective Hydrolysis of Aryl Esters under Acidic and Neutral Conditions by a Synthetic Aspartic Protease Mimic. Acs Catalysis. 11: 3938-3942. PMID 34422449 DOI: 10.1021/acscatal.1c00371   
2021 James MO. Enzyme Kinetics of PAPS-Sulfotransferase. Methods in Molecular Biology (Clifton, N.J.). 2342: 285-300. PMID 34272699 DOI: 10.1007/978-1-0716-1554-6_11   
2021 James MO. Enzyme Kinetics of PAPS-Sulfotransferase. Methods in Molecular Biology (Clifton, N.J.). 2342: 285-300. PMID 34272699 DOI: 10.1007/978-1-0716-1554-6_11   
2021 Prasher P, Sharma M. Medicinal chemistry of pyrophosphate mimics: A mini review. Drug Development Research. PMID 34506652 DOI: 10.1002/ddr.21877   
2021 Vinogradov AA, Nagano M, Goto Y, Suga H. Site-Specific Nonenzymatic Peptide S/O-Glutamylation Reveals the Extent of Substrate Promiscuity in Glutamate Elimination Domains. Journal of the American Chemical Society. 143: 13358-13369. PMID 34392675 DOI: 10.1021/jacs.1c06470   
2021 Espina G, Atalah J, Blamey JM. Extremophilic Oxidoreductases for the Industry: Five Successful Examples With Promising Projections. Frontiers in Bioengineering and Biotechnology. 9: 710035. PMID 34458243 DOI: 10.3389/fbioe.2021.710035   
2021 Zhang X, Huang Z, Wang D, Zhang Y, Eser BE, Gu Z, Dai R, Gao R, Guo Z. A new thermophilic extradiol dioxygenase promises biodegradation of catecholic pollutants. Journal of Hazardous Materials. 422: 126860. PMID 34399224 DOI: 10.1016/j.jhazmat.2021.126860   
2021 Aregbesola OA, Kumar A, Mokoena MP, Olaniran AO. Classic Pentachlorophenol Hydroxylating Phenylalanine 4-Monooxygenase from Indigenous Bacillus tropicus Strain AOA-CPS1: Cloning, Overexpression, Purification, Characterization and Structural Homology Modelling. Applied Biochemistry and Biotechnology. PMID 34417677 DOI: 10.1007/s12010-021-03645-2   
2021 Kujawa J, Głodek M, Li G, Al-Gharabli S, Knozowska K, Kujawski W. Highly effective enzymes immobilization on ceramics: Requirements for supports and enzymes. The Science of the Total Environment. 801: 149647. PMID 34467928 DOI: 10.1016/j.scitotenv.2021.149647   
2021 Zhou R, Liu X, Zeng B, Jiang W, Zhang G. [Advances of enzymes in the applications of disease treatment and drug preparation]. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 37: 2256-2271. PMID 34327893 DOI: 10.13345/j.cjb.200448   
2021 Ojeda-May P, Mushtaq AU, Rogne P, Verma A, Ovchinnikov V, Grundström C, Dulko-Smith B, Sauer UH, Wolf-Watz M, Nam K. Dynamic Connection between Enzymatic Catalysis and Collective Protein Motions. Biochemistry. 60: 2246-2258. PMID 34250801 DOI: 10.1021/acs.biochem.1c00221   
2021 Ojeda-May P, Mushtaq AU, Rogne P, Verma A, Ovchinnikov V, Grundström C, Dulko-Smith B, Sauer UH, Wolf-Watz M, Nam K. Dynamic Connection between Enzymatic Catalysis and Collective Protein Motions. Biochemistry. 60: 2246-2258. PMID 34250801 DOI: 10.1021/acs.biochem.1c00221   
2021 Zaru R, Onwubiko J, Ribeiro AJM, Cochrane K, Tyzack JD, Muthukrishnan V, Pravda L, Thornton JM, O'Donovan C, Velanker S, Orchard S, Leach A, Martin MJ. The Enzyme Portal: an integrative tool for enzyme information and analysis. The Febs Journal. PMID 34437766 DOI: 10.1111/febs.16168   
2021 Xu A, Zhang X, Wu S, Xu N, Huang Y, Yan X, Zhou J, Cui Z, Dong W. Pollutant Degrading Enzyme: Catalytic Mechanisms and Their Expanded Applications. Molecules (Basel, Switzerland). 26. PMID 34443339 DOI: 10.3390/molecules26164751   
2021 Lou D, Liu X, Tan J. An Overview of 7α- and 7β-Hydroxysteroid Dehydrogenases: Structure, Specificity and Practical Application. Protein and Peptide Letters. PMID 34397319 DOI: 10.2174/0929866528666210816114032   
2021 Wu H, Chen Q, Zhang W, Mu W. Overview of strategies for developing high thermostability industrial enzymes: Discovery, mechanism, modification and challenges. Critical Reviews in Food Science and Nutrition. 1-18. PMID 34445912 DOI: 10.1080/10408398.2021.1970508   
2021 Marshall AC, Bruning JB. Engineering potassium activation into biosynthetic thiolase. The Biochemical Journal. PMID 34338286 DOI: 10.1042/BCJ20210455   
2021 Sugiura S, Nakano S, Niwa M, Hasebe F, Matsui D, Ito S. Catalytic Mechanism of Ancestral L-Lysine Oxidase Assigned by Sequence Data Mining. The Journal of Biological Chemistry. 101043. PMID 34358565 DOI: 10.1016/j.jbc.2021.101043   
2021 Currie MJ, Manjunath L, Horne CR, Rendle PM, Subramanian R, Friemann R, Fairbanks AJ, Muscroft-Taylor AC, North RA, Dobson RCJ. N-Acetylmannosamine-6-phosphate 2-epimerase uses a novel substrate-assisted mechanism to catalyze amino sugar epimerization. The Journal of Biological Chemistry. 101113. PMID 34437902 DOI: 10.1016/j.jbc.2021.101113   
2021 Jeter VL, Escalante-Semerena JC. Sirtuin-dependent reversible lysine acetylation controls the activity of acetyl-Coenzyme A synthetase in . Journal of Bacteriology. JB0033321. PMID 34309396 DOI: 10.1128/JB.00333-21   
2021 Schmidt-Engler JM, von Berg S, Bredenbeck J. Temperature-Dependent Low-Frequency Modes in the Active Site of Bovine Carbonic Anhydrase II Probed by 2D-IR Spectroscopy. The Journal of Physical Chemistry Letters. 7777-7782. PMID 34374547 DOI: 10.1021/acs.jpclett.1c01453   
2021 Pandey S, Mahanta P, Berger BW, Acharya R. Structural insights into the mechanism of pH-selective substrate specificity of the polysaccharide lyase Smlt1473. The Journal of Biological Chemistry. 101014. PMID 34358563 DOI: 10.1016/j.jbc.2021.101014   
2021 Miranda-Rojas S, Blanco-Esperguez K, Tuñón I, Kästner J, Mendizábal F. Exploration of the Activation Mechanism of the Epigenetic Regulator MLL3: A QM/MM Study. Biomolecules. 11. PMID 34356675 DOI: 10.3390/biom11071051   
2021 Dai Y, Zhang T, Jiang B, Mu W, Chen J, Hassanin HA. Dictyoglomus turgidum DSM 6724 α-Glucan Phosphorylase: Characterization and Its Application in Multi-enzyme Cascade Reaction for D-Tagatose Production. Applied Biochemistry and Biotechnology. PMID 34379312 DOI: 10.1007/s12010-021-03624-7   
2021 Wang Z, Huang X, Liu J, Xiao F, Tian M, Ding S, Shan Y. Screening and heterologous expression of flavone synthase and flavonol synthase to catalyze hesperetin to diosmetin. Biotechnology Letters. PMID 34514540 DOI: 10.1007/s10529-021-03184-0   
2021 Xu R, Razaghi-Moghadam Z, Nikoloski Z. Maximization of non-idle enzymes improves the coverage of the estimated maximal in vivo enzyme catalytic rates in Escherichia coli. Bioinformatics (Oxford, England). PMID 34358300 DOI: 10.1093/bioinformatics/btab575   
2021 Moses ME, Lund PM, Bohr SS, Iversen JF, Kæstel-Hansen J, Kallenbach AS, Iversen L, Christensen SM, Hatzakis NS. Single-Molecule Study of Lipase in a Detergency Application System Reveals Diffusion Pattern Remodeling by Surfactants and Calcium. Acs Applied Materials & Interfaces. 13: 33704-33712. PMID 34235926 DOI: 10.1021/acsami.1c08809   
2021 Bai Y, Parker EJ. Reciprocal allostery arising from a bi-enzyme assembly controls aromatic amino acid biosynthesis in Prevotella nigrescens. The Journal of Biological Chemistry. 101038. PMID 34343567 DOI: 10.1016/j.jbc.2021.101038   
2021 Gentile K, Bhide A, Kauffman J, Ghosh S, Maiti S, Adair J, Lee TH, Sen A. Enzyme aggregation and fragmentation induced by catalysis relevant species. Physical Chemistry Chemical Physics : Pccp. PMID 34516596 DOI: 10.1039/d1cp02966e   
2021 Bouzon M, Döring V, Dubois I, Berger A, Stoffel GMM, Calzadiaz Ramirez L, Meyer SN, Fouré M, Roche D, Perret A, Erb TJ, Bar-Even A, Lindner SN. Change in Cofactor Specificity of Oxidoreductases by Adaptive Evolution of an Escherichia coli NADPH-Auxotrophic Strain. Mbio. 12: e0032921. PMID 34399608 DOI: 10.1128/mBio.00329-21   
2021 Yang N, Tian Y, Zhang M, Peng X, Li F, Li J, Li Y, Fan B, Wang F, Song H. Photocatalyst-enzyme hybrid systems for light-driven biotransformation. Biotechnology Advances. 107808. PMID 34324993 DOI: 10.1016/j.biotechadv.2021.107808   
2021 Yang N, Tian Y, Zhang M, Peng X, Li F, Li J, Li Y, Fan B, Wang F, Song H. Photocatalyst-enzyme hybrid systems for light-driven biotransformation. Biotechnology Advances. 107808. PMID 34324993 DOI: 10.1016/j.biotechadv.2021.107808   
2021 Zheng M, Li Y, Dong W, Feng S, Zhang Q, Wang W. Computational biotransformation of polyethylene terephthalate by depolymerase: A QM/MM approach. Journal of Hazardous Materials. 423: 127017. PMID 34464862 DOI: 10.1016/j.jhazmat.2021.127017   
2021 Sen A, Gaded V, Jayapal P, Rajaraman G, Anand R. Insights into the Dual Shuttle Catalytic Mechanism of Guanine Deaminase. The Journal of Physical Chemistry. B. PMID 34324362 DOI: 10.1021/acs.jpcb.1c06127   
2021 Gama SR, Stankovic T, Hupp K, Al Hejami A, McClean M, Evans A, Beauchemin D, Hammerschmidt F, Pallitsch K, Zechel DL. Biosynthesis of the Fungal Organophosphonate Fosfonochlorin Involves an Iron(II) and 2-(Oxo)glutarate Dependent Oxacyclase. Chembiochem : a European Journal of Chemical Biology. PMID 34375042 DOI: 10.1002/cbic.202100352   
2021 Balachandran C, Vishali A, Nagendran NA, Baskar K, Hashem A, Abd Allah EF. Optimization of protease production from under solid state fermentation using agrowastes. Saudi Journal of Biological Sciences. 28: 4263-4269. PMID 34354408 DOI: 10.1016/j.sjbs.2021.04.069   
2021 Chakraborty K, Dhara S. Conoidecyclics A-C from marine macroalga Turbinaria conoides: Newly described natural macrolides with prospective bioactive properties. Phytochemistry. 191: 112909. PMID 34419665 DOI: 10.1016/j.phytochem.2021.112909   
2021 Buffo MM, Ferreira ALZ, Almeida RMRG, Farinas CS, Badino AC, Ximenes EA, Ladisch MR. Cellulolytic enzymes production guided by morphology engineering. Enzyme and Microbial Technology. 149: 109833. PMID 34311878 DOI: 10.1016/j.enzmictec.2021.109833   
2021 Cheng F, Zhai QY, Gao XF, Liu HT, Qiu S, Wang YJ, Zheng YG. Tuning enzymatic properties by protein engineering toward catalytic tetrad of carbonyl reductase. Biotechnology and Bioengineering. PMID 34436762 DOI: 10.1002/bit.27925   
2021 Gabrielli V, Muñoz-García JC, Pergolizzi G, de Andrade P, Khimyak Y, Field RA, Angulo J. Molecular recognition of natural and non-natural substrates by cellodextrin phosphorylase from Ruminiclostridium thermocellum investigated by NMR spectroscopy. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 34436794 DOI: 10.1002/chem.202102039   
2021 Nakagawa A, Nakamura S, Matsumura E, Yashima Y, Takao M, Aburatani S, Yaoi K, Katayama T, Minami H. Selection of the optimal tyrosine hydroxylation enzyme for (S)-reticuline production in Escherichia coli. Applied Microbiology and Biotechnology. 105: 5433-5447. PMID 34181032 DOI: 10.1007/s00253-021-11401-z   
2021 Yang C, Liu Y, Liu WQ, Wu C, Li J. Designing Modular Cell-free Systems for Tunable Biotransformation of l-phenylalanine to Aromatic Compounds. Frontiers in Bioengineering and Biotechnology. 9: 730663. PMID 34395411 DOI: 10.3389/fbioe.2021.730663   
2021 Becker D, Bharatam PV, Gohlke H. F/G Region Rigidity is Inversely Correlated to Substrate Promiscuity of Human CYP Isoforms Involved in Metabolism. Journal of Chemical Information and Modeling. 61: 4023-4030. PMID 34370479 DOI: 10.1021/acs.jcim.1c00558