| Year |
Citation |
Score |
| 2008 |
Mattis AN, Gumport RI, Gardner JF. Purification and characterization of bacteriophage P22 Xis protein. Journal of Bacteriology. 190: 5781-96. PMID 18502866 DOI: 10.1128/Jb.00170-08 |
0.697 |
|
| 2006 |
Thomas CB, Gumport RI. Dimerization of the bacterial RsrI N6-adenine DNA methyltransferase. Nucleic Acids Research. 34: 806-15. PMID 16464821 DOI: 10.1093/Nar/Gkj486 |
0.564 |
|
| 2006 |
Jeltsch A, Gumport RI. Restriction Endonuclease and DNA-Modification Methyltransferases Reviews in Cell Biology and Molecular Medicine. DOI: 10.1002/3527600906.Mcb.200500005 |
0.53 |
|
| 2003 |
Swalla BM, Cho EH, Gumport RI, Gardner JF. The molecular basis of co-operative DNA binding between lambda integrase and excisionase. Molecular Microbiology. 50: 89-99. PMID 14507366 DOI: 10.1046/J.1365-2958.2003.03687.X |
0.537 |
|
| 2003 |
Thomas CB, Scavetta RD, Gumport RI, Churchill ME. Structures of liganded and unliganded RsrI N6-adenine DNA methyltransferase: a distinct orientation for active cofactor binding. The Journal of Biological Chemistry. 278: 26094-101. PMID 12732637 DOI: 10.1074/Jbc.M303751200 |
0.492 |
|
| 2003 |
Roberts RJ, Belfort M, Bestor T, Bhagwat AS, Bickle TA, Bitinaite J, Blumenthal RM, Degtyarev SKh, Dryden DT, Dybvig K, Firman K, Gromova ES, Gumport RI, Halford SE, Hattman S, et al. A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Research. 31: 1805-12. PMID 12654995 DOI: 10.1093/Nar/Gkg274 |
0.416 |
|
| 2003 |
Swalla BM, Gumport RI, Gardner JF. Conservation of structure and function among tyrosine recombinases: homology-based modeling of the lambda integrase core-binding domain. Nucleic Acids Research. 31: 805-18. PMID 12560475 DOI: 10.1093/Nar/Gkg142 |
0.428 |
|
| 2002 |
Kazmierczak RA, Swalla BM, Burgin AB, Gumport RI, Gardner JF. Regulation of site-specific recombination by the C-terminus of lambda integrase. Nucleic Acids Research. 30: 5193-204. PMID 12466544 DOI: 10.1093/Nar/Gkf652 |
0.533 |
|
| 2002 |
Cho EH, Gumport RI, Gardner JF. Interactions between integrase and excisionase in the phage lambda excisive nucleoprotein complex. Journal of Bacteriology. 184: 5200-3. PMID 12193639 DOI: 10.1128/Jb.184.18.5200-5203.2002 |
0.494 |
|
| 2000 |
Szegedi SS, Gumport RI. DNA binding properties in vivo and target recognition domain sequence alignment analyses of wild-type and mutant RsrI [N6-adenine] DNA methyltransferases. Nucleic Acids Research. 28: 3972-81. PMID 11024177 DOI: 10.1093/Nar/28.20.3972 |
0.76 |
|
| 2000 |
Szegedi SS, Reich NO, Gumport RI. Substrate binding in vitro and kinetics of RsrI [N6-adenine] DNA methyltransferase. Nucleic Acids Research. 28: 3962-71. PMID 11024176 DOI: 10.1093/Nar/28.20.3962 |
0.755 |
|
| 2000 |
Scavetta RD, Thomas CB, Walsh MA, Szegedi S, Joachimiak A, Gumport RI, Churchill ME. Structure of RsrI methyltransferase, a member of the N6-adenine beta class of DNA methyltransferases. Nucleic Acids Research. 28: 3950-61. PMID 11024175 DOI: 10.1093/Nar/28.20.3950 |
0.751 |
|
| 2000 |
Cho EH, Alcaraz R, Gumport RI, Gardner JF. Characterization of bacteriophage lambda excisionase mutants defective in DNA binding. Journal of Bacteriology. 182: 5807-12. PMID 11004181 DOI: 10.1128/Jb.182.20.5807-5812.2000 |
0.555 |
|
| 2000 |
Read EK, Gumport RI, Gardner JF. Specific recognition of DNA by integration host factor. Glutamic acid 44 of the beta-subunit specifies the discrimination of a T:A from an A:T base pair without directly contacting the DNA. The Journal of Biological Chemistry. 275: 33759-64. PMID 10930420 DOI: 10.1074/Jbc.M910381199 |
0.486 |
|
| 2000 |
Cheng Q, Swalla BM, Beck M, Alcaraz R, Gumport RI, Gardner JF. Specificity determinants for bacteriophage Hong Kong 022 integrase: analysis of mutants with relaxed core-binding specificities. Molecular Microbiology. 36: 424-36. PMID 10792728 DOI: 10.1046/J.1365-2958.2000.01860.X |
0.47 |
|
| 1999 |
Kosztin D, Gumport RI, Schulten K. Probing the role of structural water in a duplex oligodeoxyribonucleotide containing a water-mimicking base analog. Nucleic Acids Research. 27: 3550-6. PMID 10446246 DOI: 10.1093/Nar/27.17.3550 |
0.436 |
|
| 1998 |
Wu Z, Gumport RI, Gardner JF. Defining the structural and functional roles of the carboxyl region of the bacteriophage lambda excisionase (Xis) protein. Journal of Molecular Biology. 281: 651-61. PMID 9710537 DOI: 10.1006/Jmbi.1998.1963 |
0.44 |
|
| 1998 |
Szegedi SS, Ma Z, Gumport RI. A novel scheme for the purification of wildtype and mutant rsrl dna methyltransferases (MTASES) Faseb Journal. 12. |
0.722 |
|
| 1997 |
Wu Z, Gumport RI, Gardner JF. Genetic analysis of second-site revertants of bacteriophage lambda integrase mutants. Journal of Bacteriology. 179: 4030-8. PMID 9190821 DOI: 10.1128/Jb.179.12.4030-4038.1997 |
0.424 |
|
| 1997 |
MacWilliams M, Gumport RI, Gardner JF. Mutational analysis of protein binding sites involved in formation of the bacteriophage lambda attL complex. Journal of Bacteriology. 179: 1059-67. PMID 9023184 DOI: 10.1128/Jb.179.4.1059-1067.1997 |
0.449 |
|
| 1996 |
MacWilliams MP, Gumport RI, Gardner JF. Genetic analysis of the bacteriophage lambda attL nucleoprotein complex. Genetics. 143: 1069-79. PMID 8807282 |
0.375 |
|
| 1996 |
Hales LM, Gumport RI, Gardner JF. Examining the contribution of a dA+dT element to the conformation of Escherichia coli integration host factor-DNA complexes. Nucleic Acids Research. 24: 1780-6. PMID 8650000 DOI: 10.1093/Nar/24.9.1780 |
0.545 |
|
| 1996 |
Rockhill JK, Wilson SR, Gumport RI. 2'-Deoxy-7-(hydroxymethyl)-7-deazaadenosine: A new analogue to model structural water in the major groove of DNA Journal of the American Chemical Society. 118: 10065-10068. DOI: 10.1021/Ja961540S |
0.436 |
|
| 1996 |
Rockhill JK, Gumport RI. The synthesis of 7-hydroxymethyl-7-deazaadenosine, a new adenosine analogue to probe the role of water in protein/DNA interactions and in DNA dynamics Faseb Journal. 10. |
0.395 |
|
| 1995 |
Chen LJ, Liang YJ, Jeng ST, Orozco EM, Gumport RI, Lin CH, Yang MT. Transcription termination at the Escherichia coli thra terminator by spinach chloroplast RNA polymerase in vitro is influenced by downstream DNA sequences. Nucleic Acids Research. 23: 4690-7. PMID 8524662 DOI: 10.1093/Nar/23.22.4690 |
0.403 |
|
| 1995 |
Fisher EW, Yang MT, Jeng ST, Gardner JF, Gumport RI. Selection of mutations altering specificity in restriction-modification enzymes using the bacteriophage P22 challenge-phage system. Gene. 157: 119-21. PMID 7607471 DOI: 10.1016/0378-1119(95)00021-W |
0.513 |
|
| 1995 |
Wang S, Cosstick R, Gardner JF, Gumport RI. The specific binding of Escherichia coli integration host factor involves both major and minor grooves of DNA. Biochemistry. 34: 13082-90. PMID 7548068 DOI: 10.1021/Bi00040A020 |
0.533 |
|
| 1994 |
Han YW, Gumport RI, Gardner JF. Mapping the functional domains of bacteriophage lambda integrase protein. Journal of Molecular Biology. 235: 908-25. PMID 8289327 DOI: 10.1006/Jmbi.1994.1048 |
0.511 |
|
| 1994 |
Hales LM, Gumport RI, Gardner JF. Determining the DNA sequence elements required for binding integration host factor to two different target sites. Journal of Bacteriology. 176: 2999-3006. PMID 8188600 DOI: 10.1128/Jb.176.10.2999-3006.1994 |
0.414 |
|
| 1994 |
Hales LM, Gumport RI, Gardner JF. Mutants of Escherichia coli integration host factor: DNA-binding and recombination properties. Biochimie. 76: 1030-40. PMID 7748924 DOI: 10.1016/0300-9084(94)90027-2 |
0.55 |
|
| 1993 |
Han YW, Gumport RI, Gardner JF. Complementation of bacteriophage lambda integrase mutants: evidence for an intersubunit active site. The Embo Journal. 12: 4577-84. PMID 8223467 DOI: 10.1002/J.1460-2075.1993.Tb06146.X |
0.586 |
|
| 1992 |
Van Cleve MD, Gumport RI. Influence of enzyme-substrate contacts located outside the EcoRI recognition site on cleavage of duplex oligodeoxyribonucleotide substrates by EcoRI endonuclease. Biochemistry. 31: 334-9. PMID 1731891 |
0.344 |
|
| 1992 |
Lee EC, Hales LM, Gumport RI, Gardner JF. The isolation and characterization of mutants of the integration host factor (IHF) of Escherichia coli with altered, expanded DNA-binding specificities. The Embo Journal. 11: 305-13. PMID 1531459 |
0.499 |
|
| 1992 |
Kaszubska W, Webb HK, Gumport RI. Purification and characterization of the M.RsrI DNA methyltransferase from Escherichia coli. Gene. 118: 5-11. PMID 1511884 DOI: 10.1016/0378-1119(92)90242-H |
0.505 |
|
| 1992 |
Numrych TE, Gumport RI, Gardner JF. Characterization of the bacteriophage lambda excisionase (Xis) protein: the C-terminus is required for Xis-integrase cooperativity but not for DNA binding. The Embo Journal. 11: 3797-806. PMID 1396573 DOI: 10.1002/J.1460-2075.1992.Tb05465.X |
0.555 |
|
| 1992 |
Purmal AA, Shabarova ZA, Gumport RI. A new affinity reagent for the site-specific, covalent attachment of DNA to active-site nucleophiles: application to the EcoRI and RsrI restriction and modification enzymes. Nucleic Acids Research. 20: 3713-9. PMID 1322528 DOI: 10.1093/Nar/20.14.3713 |
0.516 |
|
| 1991 |
Aiken CR, McLaughlin LW, Gumport RI. The highly homologous isoschizomers RsrI endonuclease and EcoRI endonuclease do not recognize their target sequence identically. The Journal of Biological Chemistry. 266: 19070-8. PMID 1918026 |
0.466 |
|
| 1991 |
Aiken CR, Fisher EW, Gumport RI. The specific binding, bending, and unwinding of DNA by RsrI endonuclease, an isoschizomer of EcoRI endonuclease. The Journal of Biological Chemistry. 266: 19063-9. PMID 1918025 |
0.521 |
|
| 1991 |
Numrych TE, Gumport RI, Gardner JF. A genetic analysis of Xis and FIS interactions with their binding sites in bacteriophage lambda. Journal of Bacteriology. 173: 5954-63. PMID 1833380 DOI: 10.1128/Jb.173.19.5954-5963.1991 |
0.483 |
|
| 1991 |
Lee EC, MacWilliams MP, Gumport RI, Gardner JF. Genetic analysis of Escherichia coli integration host factor interactions with its bacteriophage lambda H' recognition site. Journal of Bacteriology. 173: 609-17. PMID 1824766 DOI: 10.1128/Jb.173.2.609-617.1991 |
0.434 |
|
| 1991 |
Aiken CR, Gumport RI. Base analogs in study of restriction enzyme-DNA interactions. Methods in Enzymology. 208: 433-57. PMID 1664027 |
0.4 |
|
| 1990 |
Lee EC, Gumport RI, Gardner JF. Genetic analysis of bacteriophage lambda integrase interactions with arm-type attachment site sequences. Journal of Bacteriology. 172: 1529-38. PMID 2155203 DOI: 10.1128/Jb.172.3.1529-1538.1990 |
0.474 |
|
| 1990 |
Numrych TE, Gumport RI, Gardner JF. A comparison of the effects of single-base and triple-base changes in the integrase arm-type binding sites on the site-specific recombination of bacteriophage lambda. Nucleic Acids Research. 18: 3953-9. PMID 2142765 DOI: 10.1093/Nar/18.13.3953 |
0.382 |
|
| 1989 |
Kaszubska W, Aiken C, O'Connor CD, Gumport RI. Purification, cloning and sequence analysis of RsrI DNA methyltransferase: lack of homology between two enzymes, RsrI and EcoRI, that methylate the same nucleotide in identical recognition sequences. Nucleic Acids Research. 17: 10403-25. PMID 2690017 DOI: 10.1093/Nar/17.24.10403 |
0.46 |
|
| 1988 |
Kaszubska W, Aiken CR, Gumport RI. RsrI restriction-modification enzymes from Rhodobacter sphaeroides. Gene. 74: 83-4. PMID 3266862 DOI: 10.1016/0378-1119(88)90257-0 |
0.318 |
|
| 1988 |
Aiken C, Gumport RI. Restriction endonuclease RsrI from Rhodobacter sphaeroides, an isoschizomer of EcoRI: purification and properties. Nucleic Acids Research. 16: 7901-16. PMID 2843805 DOI: 10.1093/Nar/16.16.7901 |
0.354 |
|
| 1988 |
DeHoff BS, Lee JK, Donohue TJ, Gumport RI, Kaplan S. In vivo analysis of puf operon expression in Rhodobacter sphaeroides after deletion of a putative intercistronic transcription terminator. Journal of Bacteriology. 170: 4681-92. PMID 2459108 DOI: 10.1128/Jb.170.10.4681-4692.1988 |
0.306 |
|
| 1987 |
Lynn SP, Burton WS, Donohue TJ, Gould RM, Gumport RI, Gardner JF. Specificity of the attenuation response of the threonine operon of Escherichia coli is determined by the threonine and isoleucine codons in the leader transcript. Journal of Molecular Biology. 194: 59-69. PMID 3112412 DOI: 10.1016/0022-2836(87)90715-7 |
0.337 |
|
| 1987 |
Gumport RI. Protein binding to DNA. Nature. 328: 21. PMID 3037379 DOI: 10.1038/328021b0 |
0.431 |
|
| 1986 |
Brennan CA, Van Cleve MD, Gumport RI. The effects of base analogue substitutions on the methylation by the EcoRI modification methylase of octadeoxyribonucleotides containing modified EcoRI recognition sequences. The Journal of Biological Chemistry. 261: 7279-86. PMID 3011781 |
0.384 |
|
| 1986 |
Brennan CA, Van Cleve MD, Gumport RI. The effects of base analogue substitutions on the cleavage by the EcoRI restriction endonuclease of octadeoxyribonucleotides containing modified EcoRI recognition sequences. The Journal of Biological Chemistry. 261: 7270-8. PMID 3011780 |
0.441 |
|
| 1986 |
Bauer CE, Hesse SD, Gumport RI, Gardner JF. Mutational analysis of integrase arm-type binding sites of bacteriophage lambda. Integration and excision involve distinct interactions of integrase with arm-type sites. Journal of Molecular Biology. 192: 513-27. PMID 2951525 DOI: 10.1016/0022-2836(86)90273-1 |
0.422 |
|
| 1986 |
Thompson JF, Waechter-Brulla D, Gumport RI, Gardner JF, Moitoso de Vargas L, Landy A. Mutations in an integration host factor-binding site: Effect on lambda site-specific recombination and regulatory implications Journal of Bacteriology. 168: 1343-1351. PMID 2946666 DOI: 10.1128/Jb.168.3.1343-1351.1986 |
0.355 |
|
| 1985 |
Brennan CA, Gumport RI. T4 RNA ligase catalyzed synthesis of base analogue-containing oligodeoxyribonucleotides and a characterization of their thermal stabilities. Nucleic Acids Research. 13: 8665-84. PMID 4080551 DOI: 10.1093/Nar/13.24.8665 |
0.323 |
|
| 1985 |
Bauer CE, Hesse SD, Waechter-Brulla DA, Lynn SP, Gumport RI, Gardner JF. A genetic enrichment for mutations constructed by oligodeoxynucleotide-directed mutagenesis. Gene. 37: 73-81. PMID 4054630 DOI: 10.1016/0378-1119(85)90259-8 |
0.469 |
|
| 1985 |
Bauer CE, Gardner JF, Gumport RI. Extent of sequence homology required for bacteriophage lambda site-specific recombination. Journal of Molecular Biology. 181: 187-97. PMID 3157003 DOI: 10.1016/0022-2836(85)90084-1 |
0.465 |
|
| 1984 |
Bauer CE, Hesse SD, Gardner JF, Gumport RI. DNA interactions during bacteriophage lambda site-specific recombination. Cold Spring Harbor Symposia On Quantitative Biology. 49: 699-705. PMID 6241556 DOI: 10.1101/Sqb.1984.049.01.079 |
0.517 |
|
| 1984 |
Bauer CE, Hesse SD, Gumport RI, Gardner JF. Role of DNA homology in INT mediated recombination by bacteriophage lambda Federation Proceedings. 43: no. 708. |
0.417 |
|
| 1983 |
Brennan CA, Manthey AE, Gumport RI. Using T4 RNA ligase with DNA substrates. Methods in Enzymology. 100: 38-52. PMID 6353144 DOI: 10.1016/0076-6879(83)00044-0 |
0.459 |
|
| 1982 |
Hinton DM, Brennan CA, Gumport RI. The preparative synthesis of oligodeoxyribonucleotides using RNA ligase. Nucleic Acids Research. 10: 1877-94. PMID 7043396 DOI: 10.1093/Nar/10.6.1877 |
0.312 |
|
| 1980 |
McCoy MI, Gumport RI. T4 ribonucleic acid ligase joins single-strand oligo(deoxyribonucleotides). Biochemistry. 19: 635-42. PMID 6986903 DOI: 10.1021/Bi00545A005 |
0.478 |
|
| 1979 |
Hinton DM, Gumport RI. The synthesis of oligodeoxyribonucleotides using RNA ligase. Nucleic Acids Research. 7: 453-64. PMID 386284 DOI: 10.1093/Nar/7.2.453 |
0.333 |
|
| 1979 |
McCoy MI, Lubben TH, Gumport RI. The purification of nuclease-free T4-RNA ligase. Biochimica Et Biophysica Acta. 562: 149-61. PMID 219895 DOI: 10.1016/0005-2787(79)90134-5 |
0.376 |
|
| 1978 |
Hinton DM, Baez JA, Gumport RI. T4 RNA Ligase joins 2'-deoxyribonucleoside 3',5'-bisphosphates to oligodeoxyribonucleotides. Biochemistry. 17: 5091-7. PMID 728390 DOI: 10.1021/Bi00617A004 |
0.438 |
|
| 1977 |
Bedows E, Wachsman JT, Gumport RI. L cell DNA ligase joins RNA to DNA on a DNA template. Biochemistry. 16: 2231-5. PMID 871316 DOI: 10.1021/Bi00629A029 |
0.401 |
|
| 1977 |
England TE, Gumport RI, Uhlenbeck OC. Dinucleoside pyrophosphates are substrates for T4-induced RNA ligase Proceedings of the National Academy of Sciences of the United States of America. 74: 4839-4842. PMID 200936 DOI: 10.1073/Pnas.74.11.4839 |
0.321 |
|
| 1976 |
Gumport RI, Edelheit EB. The synthesis of 3'-dATP and its use as an inhibitor of ATP-dependent DNA synthesis in toluene-treated Escherichia coli. Biochemistry. 15: 2804-9. PMID 779831 DOI: 10.1021/Bi00658A016 |
0.428 |
|
| 1975 |
Walker GC, Uhlenbeck OC, Bedows E, Gumport RI. T4-induced RNA ligase joins single-stranded oligoribonucleotides. Proceedings of the National Academy of Sciences of the United States of America. 72: 122-6. PMID 1090929 DOI: 10.1073/Pnas.72.1.122 |
0.352 |
|
| 1975 |
Greenfield JC, Leonard NJ, Gumport RI. Nicotinamide 3,N4-ethenocytosine dinucleotide, an analog of nicotinamide adenine dinucleotide. Synthesis and enzyme studies. Biochemistry. 14: 698-706. PMID 234741 DOI: 10.1021/Bi00675A009 |
0.314 |
|
| 1971 |
Gumport RI, Lehman IR. Structure of the DNA ligase-adenylate intermediate: lysine (epsilon-amino)-linked adenosine monophosphoramidate. Proceedings of the National Academy of Sciences of the United States of America. 68: 2559-63. PMID 4944632 DOI: 10.1073/Pnas.68.10.2559 |
0.497 |
|
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