David B. Haniford - Publications

The University of Western Ontario (Canada) 

39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Ellis MJ, Carfrae LA, Macnair CR, Trussler RS, Brown ED, Haniford DB. Silent but deadly: IS200 promotes pathogenicity in Salmonella Typhimurium. Rna Biology. 0. PMID 29120256 DOI: 10.1080/15476286.2017.1403001  0.303
2016 Ellis MJ, Haniford DB. Riboregulation of bacterial and archaeal transposition. Wiley Interdisciplinary Reviews. Rna. PMID 26846462 DOI: 10.1002/Wrna.1341  0.344
2015 Haniford DB, Ellis MJ. Transposons Tn10 and Tn5. Microbiology Spectrum. 3: MDNA3-0002-2014. PMID 26104553 DOI: 10.1128/Microbiolspec.Mdna3-0002-2014  0.352
2015 Ellis MJ, Trussler RS, Haniford DB. A cis-encoded sRNA, Hfq and mRNA secondary structure act independently to suppress IS200 transposition. Nucleic Acids Research. 43: 6511-27. PMID 26044710 DOI: 10.1093/Nar/Gkv584  0.326
2014 Ross JA, Trussler RS, Black MD, McLellan CR, Haniford DB. Tn5 transposition in Escherichia coli is repressed by Hfq and activated by over-expression of the small non-coding RNA SgrS. Mobile Dna. 5: 27. PMID 25506402 DOI: 10.1186/S13100-014-0027-Z  0.33
2011 Liu D, Haniford DB, Chalmers RM. H-NS mediates the dissociation of a refractory protein-DNA complex during Tn10/IS10 transposition. Nucleic Acids Research. 39: 6660-8. PMID 21565798 DOI: 10.1093/Nar/Gkr309  0.755
2009 Wardle SJ, Chan A, Haniford DB. H-NS binds with high affinity to the Tn10 transpososome and promotes transpososome stabilization. Nucleic Acids Research. 37: 6148-60. PMID 19696075 DOI: 10.1093/Nar/Gkp672  0.363
2009 Whitfield CR, Wardle SJ, Haniford DB. The global bacterial regulator H-NS promotes transpososome formation and transposition in the Tn5 system. Nucleic Acids Research. 37: 309-21. PMID 19042975 DOI: 10.1093/Nar/Gkn935  0.337
2008 Singh RK, Liburd J, Wardle SJ, Haniford DB. The nucleoid binding protein H-NS acts as an anti-channeling factor to favor intermolecular Tn10 transposition and dissemination. Journal of Molecular Biology. 376: 950-62. PMID 18191147 DOI: 10.1016/J.Jmb.2007.12.035  0.444
2007 Mizuuchi M, Rice PA, Wardle SJ, Haniford DB, Mizuuchi K. Control of transposase activity within a transpososome by the configuration of the flanking DNA segment of the transposon. Proceedings of the National Academy of Sciences of the United States of America. 104: 14622-7. PMID 17785414 DOI: 10.1073/Pnas.0706556104  0.507
2007 Mutiu AI, Hoke SM, Genereaux J, Hannam C, MacKenzie K, Jobin-Robitaille O, Guzzo J, Côté J, Andrews B, Haniford DB, Brandl CJ. Structure/function analysis of the phosphatidylinositol-3-kinase domain of yeast tra1. Genetics. 177: 151-66. PMID 17660562 DOI: 10.1534/Genetics.107.074476  0.313
2007 Ward CM, Wardle SJ, Singh RK, Haniford DB. The global regulator H-NS binds to two distinct classes of sites within the Tn10 transpososome to promote transposition. Molecular Microbiology. 64: 1000-13. PMID 17501923 DOI: 10.1111/J.1365-2958.2007.05708.X  0.381
2006 Haniford DB. Transpososome dynamics and regulation in Tn10 transposition. Critical Reviews in Biochemistry and Molecular Biology. 41: 407-24. PMID 17092825 DOI: 10.1080/10409230600987415  0.414
2006 Whitfield CR, Wardle SJ, Haniford DB. Formation, characterization and partial purification of a Tn5 strand transfer complex. Journal of Molecular Biology. 364: 290-301. PMID 17014865 DOI: 10.1016/J.Jmb.2006.09.038  0.571
2005 Wardle SJ, O'Carroll M, Derbyshire KM, Haniford DB. The global regulator H-NS acts directly on the transpososome to promote Tn10 transposition. Genes & Development. 19: 2224-35. PMID 16166383 DOI: 10.1101/Gad.1338905  0.325
2005 Humayun S, Wardle SJ, Shilton BH, Pribil PA, Liburd J, Haniford DB. Tn10 transposase mutants with altered transpososome unfolding properties are defective in hairpin formation. Journal of Molecular Biology. 346: 703-16. PMID 15713457 DOI: 10.1016/J.Jmb.2004.12.009  0.785
2004 Pribil PA, Wardle SJ, Haniford DB. Enhancement and rescue of target capture in Tn10 transposition by site-specific modifications in target DNA. Molecular Microbiology. 52: 1173-86. PMID 15130133 DOI: 10.1111/J.1365-2958.2004.04046.X  0.79
2004 Swingle B, O'Carroll M, Haniford D, Derbyshire KM. The effect of host-encoded nucleoid proteins on transposition: H-NS influences targeting of both IS903 and Tn10. Molecular Microbiology. 52: 1055-67. PMID 15130124 DOI: 10.1111/J.1365-2958.2004.04051.X  0.456
2003 Pribil PA, Haniford DB. Target DNA bending is an important specificity determinant in target site selection in Tn10 transposition. Journal of Molecular Biology. 330: 247-59. PMID 12823965 DOI: 10.1016/S0022-2836(03)00588-6  0.79
2002 Stewart BJ, Wardle SJ, Haniford DB. IHF-independent assembly of the Tn10 strand transfer transpososome: implications for inhibition of disintegration. The Embo Journal. 21: 4380-90. PMID 12169640 DOI: 10.1093/Emboj/Cdf425  0.467
2002 Allingham JS, Haniford DB. Mechanisms of metal ion action in Tn10 transposition. Journal of Molecular Biology. 319: 53-65. PMID 12051936 DOI: 10.1016/S0022-2836(02)00297-8  0.69
2001 Allingham JS, Wardle SJ, Haniford DB. Determinants for hairpin formation in Tn10 transposition. The Embo Journal. 20: 2931-42. PMID 11387226 DOI: 10.1093/Emboj/20.11.2931  0.715
2000 Pribil PA, Haniford DB. Substrate recognition and induced DNA deformation by transposase at the target-capture stage of Tn10 transposition. Journal of Molecular Biology. 303: 145-59. PMID 11023782 DOI: 10.1006/Jmbi.2000.4135  0.794
2000 Kennedy AK, Haniford DB, Mizuuchi K. Single active site catalysis of the successive phosphoryl transfer steps by DNA transposases: insights from phosphorothioate stereoselectivity. Cell. 101: 295-305. PMID 10847684 DOI: 10.1016/S0092-8674(00)80839-9  0.492
1999 Santagata S, Besmer E, Villa A, Bozzi F, Allingham JS, Sobacchi C, Haniford DB, Vezzoni P, Nussenzweig MC, Pan ZQ, Cortes P. The RAG1/RAG2 complex constitutes a 3' flap endonuclease: implications for junctional diversity in V(D)J and transpositional recombination. Molecular Cell. 4: 935-47. PMID 10635319 DOI: 10.1016/S1097-2765(00)80223-3  0.7
1999 Allingham JS, Pribil PA, Haniford DB. All three residues of the Tn 10 transposase DDE catalytic triad function in divalent metal ion binding. Journal of Molecular Biology. 289: 1195-206. PMID 10373361 DOI: 10.1006/Jmbi.1999.2837  0.71
1998 Kennedy AK, Guhathakurta A, Kleckner N, Haniford DB. Tn10 transposition via a DNA hairpin intermediate. Cell. 95: 125-34. PMID 9778253 DOI: 10.1016/S0092-8674(00)81788-2  0.675
1997 Junop MS, Haniford DB. Factors responsible for target site selection in Tn10 transposition: A role for the DDE motif in target DNA capture Embo Journal. 16: 2646-2655. PMID 9184211 DOI: 10.1093/Emboj/16.10.2646  0.508
1996 Junop MS, Haniford DB. Multiple roles for divalent metal ions in DNA transposition: Distinct stages of Tn 10 transposition have different Mg2+ requirements Embo Journal. 15: 2547-2555. PMID 8665862  0.403
1996 Kennedy AK, Haniford DB. Isolation and characterization of IS10 transposase separation of function mutants: Identification of amino acid residues in transposase that are important for active site function and the stability of transposition intermediates Journal of Molecular Biology. 256: 533-547. PMID 8604136 DOI: 10.1006/Jmbi.1996.0106  0.412
1996 Junop MS, Haniford DB. Multiple roles for divalent metal ions in DNA transposition: distinct stages of Tn10 transposition have different Mg2+ requirements. The Embo Journal. 15: 2547-2555. DOI: 10.1002/J.1460-2075.1996.Tb00612.X  0.497
1994 Haniford D, Kleckner N. Tn 10 transposition in vivo: temporal separation of cleavages at the two transposon ends and roles of terminal basepairs subsequent to interaction of ends. The Embo Journal. 13: 3401-3411. DOI: 10.1002/J.1460-2075.1994.Tb06643.X  0.623
1992 Haniford DB, Chaconas G. Mechanistic aspects of DNA transposition Current Opinion in Genetics and Development. 2: 698-704. PMID 1333854 DOI: 10.1016/0960-9822(92)90017-5  0.447
1989 Haniford DB, Chelouche AR, Kleckner N. A specific class of IS10 transposase mutants are blocked for target site interactions and promote formation of an excised transposon fragment Cell. 59: 385-394. PMID 2553270 DOI: 10.1016/0092-8674(89)90299-7  0.577
1988 Glover JN, Haniford DB, Pulleyblank DE. Intermediate range effects in DNA. I: Low pH/stress induced conformational changes in the vicinity of an extruded d(AT)n.d(AT) in cruciform. Nucleic Acids Research. 16: 5473-90. PMID 3387239 DOI: 10.1093/nar/16.12.5473  0.739
1985 Haniford DB, Pulleyblank DE. Transition of a cloned d(AT)n-d(AT)n tract to a cruciform in vivo. Nucleic Acids Research. 13: 4343-63. PMID 4011446 DOI: 10.1093/Nar/13.12.4343  0.674
1985 Pulleyblank DE, Haniford DB, Morgan AR. A structural basis for S1 nuclease sensitivity of double-stranded DNA. Cell. 42: 271-80. PMID 2990727 DOI: 10.1016/S0092-8674(85)80122-7  0.746
1983 Haniford DB, Pulleyblank DE. Facile transition of poly[d(TG) x d(CA)] into a left-handed helix in physiological conditions. Nature. 302: 632-4. PMID 6835398 DOI: 10.1038/302632a0  0.673
1983 Haniford DB, Pulleyblank DE. The in-vivo occurrence of Z DNA. Journal of Biomolecular Structure & Dynamics. 1: 593-609. PMID 6401120 DOI: 10.1080/07391102.1983.10507467  0.729
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