| Year |
Citation |
Score |
| 2023 |
Lejault P, Prudent L, Terrier MP, Perreault JP. Small molecule chaperones facilitate the folding of RNA G-quadruplexes. Biochimie. PMID 37666291 DOI: 10.1016/j.biochi.2023.08.016 |
0.405 |
|
| 2023 |
Turcotte MA, Bolduc F, Vannutelli A, Mitteaux J, Monchaud D, Perreault JP. Development of a highly optimized procedure for the discovery of RNA G-quadruplexes by combining several strategies. Biochimie. PMID 37479077 DOI: 10.1016/j.biochi.2023.07.014 |
0.415 |
|
| 2021 |
Adkar-Purushothama CR, Iyer PS, Sano T, Perreault JP. sRNA Profiler: A User-Focused Interface for Small RNA Mapping and Profiling. Cells. 10. PMID 34359940 DOI: 10.3390/cells10071771 |
0.373 |
|
| 2020 |
Adkar-Purushothama CR, Perreault JP. Impact of Nucleic Acid Sequencing on Viroid Biology. International Journal of Molecular Sciences. 21. PMID 32752288 DOI: 10.3390/Ijms21155532 |
0.348 |
|
| 2020 |
Adkar-Purushothama CR, Bolduc F, Bru P, Perreault JP. Insights Into Potato Spindle Tuber Viroid Quasi-Species From Infection to Disease. Frontiers in Microbiology. 11: 1235. PMID 32719659 DOI: 10.3389/Fmicb.2020.01235 |
0.414 |
|
| 2020 |
Bolduc F, Turcotte MA, Perreault JP. The Small Nuclear Ribonucleoprotein Polypeptide A (SNRPA) binds to the G-quadruplex of the BAG-1 5'UTR. Biochimie. PMID 32629040 DOI: 10.1016/J.Biochi.2020.06.013 |
0.425 |
|
| 2019 |
Adkar-Purushothama CR, Perreault JP. Current overview on viroid-host interactions. Wiley Interdisciplinary Reviews. Rna. e1570. PMID 31642206 DOI: 10.1002/Wrna.1570 |
0.426 |
|
| 2019 |
Jodoin R, Carrier JC, Rivard N, Bisaillon M, Perreault JP. G-quadruplex located in the 5'UTR of the BAG-1 mRNA affects both its cap-dependent and cap-independent translation through global secondary structure maintenance. Nucleic Acids Research. PMID 31504805 DOI: 10.1093/Nar/Gkz777 |
0.406 |
|
| 2019 |
Cottilli P, Belda-Palazón B, Adkar-Purushothama CR, Perreault JP, Schleiff E, Rodrigo I, Ferrando A, Lisón P. Citrus exocortis viroid causes ribosomal stress in tomato plants. Nucleic Acids Research. PMID 31392997 DOI: 10.1093/Nar/Gkz679 |
0.431 |
|
| 2019 |
Adkar-Purushothama CR, Perreault JP. Suppression of Favors the Accumulation of Potato Spindle Tuber Viroid in . Viruses. 11. PMID 31013994 DOI: 10.3390/V11040345 |
0.402 |
|
| 2019 |
Boudreault S, Armero VES, Scott MS, Perreault JP, Bisaillon M. The Epstein-Barr virus EBNA1 protein modulates the alternative splicing of cellular genes. Virology Journal. 16: 29. PMID 30832682 DOI: 10.1186/S12985-019-1137-5 |
0.319 |
|
| 2018 |
Jodoin R, Perreault JP. G-quadruplexes formation in the 5'UTRs of mRNAs associated with colorectal cancer pathways. Plos One. 13: e0208363. PMID 30507959 DOI: 10.1371/Journal.Pone.0208363 |
0.39 |
|
| 2018 |
Adkar-Purushothama CR, Sano T, Perreault JP. Viroid derived small RNA induces early flowering in tomato plants by RNA silencing. Molecular Plant Pathology. PMID 30011126 DOI: 10.1111/Mpp.12721 |
0.467 |
|
| 2018 |
Garant JM, Perreault JP, Scott MS. G4RNA screener web server: User focused interface for RNA G-quadruplex prediction. Biochimie. PMID 29885355 DOI: 10.1016/J.Biochi.2018.06.002 |
0.415 |
|
| 2018 |
Adkar-Purushothama CR, Perreault JP. Alterations of the viroid regions that interact with the host defense genes attenuate viroid infection in host plant. Rna Biology. 0. PMID 29683389 DOI: 10.1080/15476286.2018.1462653 |
0.331 |
|
| 2017 |
Garant JM, Perreault JP, Scott MS. Motif independent identification of potential RNA G-quadruplexes by G4RNA screener. Bioinformatics (Oxford, England). PMID 29036425 DOI: 10.1093/Bioinformatics/Btx498 |
0.414 |
|
| 2017 |
Adkar-Purushothama CR, Bru P, Perreault JP. 3' RNA Ligase Mediated Rapid Amplification of cDNA ends for validating viroid induced cleavage at the 3' extremity of the host mRNA. Journal of Virological Methods. PMID 28947148 DOI: 10.1016/J.Jviromet.2017.09.023 |
0.491 |
|
| 2017 |
Adkar-Purushothama CR, Iyer PS, Perreault JP. Potato spindle tuber viroid infection triggers degradation of chloride channel protein CLC-b-like and Ribosomal protein S3a-like mRNAs in tomato plants. Scientific Reports. 7: 8341. PMID 28827569 DOI: 10.1038/S41598-017-08823-Z |
0.41 |
|
| 2017 |
Giguère T, Perreault JP. Classification of the Pospiviroidae based on their structural hallmarks. Plos One. 12: e0182536. PMID 28783761 DOI: 10.1371/Journal.Pone.0182536 |
0.389 |
|
| 2017 |
Glouzon JS, Perreault JP, Wang S. Structurexplor: A platform for the exploration of structural features of RNA secondary structures. Bioinformatics (Oxford, England). PMID 28575203 DOI: 10.1093/Bioinformatics/Btx323 |
0.465 |
|
| 2017 |
Armero VES, Tremblay MP, Allaire A, Boudreault S, Martenon-Brodeur C, Duval C, Durand M, Lapointe E, Thibault P, Tremblay-Létourneau M, Perreault JP, Scott MS, Bisaillon M. Transcriptome-wide analysis of alternative RNA splicing events in Epstein-Barr virus-associated gastric carcinomas. Plos One. 12: e0176880. PMID 28493890 DOI: 10.1371/Journal.Pone.0176880 |
0.42 |
|
| 2017 |
Rouleau SG, Glouzon JS, Brumwell A, Bisaillon M, Perreault JP. 3' UTR G-Quadruplexes regulate miRNA binding. Rna (New York, N.Y.). PMID 28473452 DOI: 10.1261/Rna.060962.117 |
0.312 |
|
| 2017 |
Rouleau S, Jodoin R, Garant JM, Perreault JP. RNA G-Quadruplexes as Key Motifs of the Transcriptome. Advances in Biochemical Engineering/Biotechnology. PMID 28382477 DOI: 10.1007/10_2017_8 |
0.48 |
|
| 2017 |
Glouzon JS, Perreault JP, Wang S. The super-n-motifs model: a novel alignment-free approach for representing and comparing RNA secondary structures. Bioinformatics (Oxford, England). PMID 28088762 DOI: 10.1093/Bioinformatics/Btw773 |
0.476 |
|
| 2017 |
Jodoin R, Perreault J, Bisaillon M. Abstract A08: A 5' UTR RNA G-Quadruplex structure affects both the cap-dependent and independent translation of BAG-1, an mRNA involved in colorectal cancer Cancer Research. 77. DOI: 10.1158/1538-7445.Transcontrol16-A08 |
0.402 |
|
| 2016 |
Song J, Perreault JP, Topisirovic I, Richard S. RNA G-quadruplexes and their potential regulatory roles in translation. Translation (Austin, Tex.). 4: e1244031. PMID 28090421 DOI: 10.1080/21690731.2016.1244031 |
0.4 |
|
| 2016 |
Boudreault S, Martenon-Brodeur C, Caron M, Garant JM, Tremblay MP, Armero VE, Durand M, Lapointe E, Thibault P, Tremblay-Létourneau M, Perreault JP, Scott MS, Lemay G, Bisaillon M. Global Profiling of the Cellular Alternative RNA Splicing Landscape during Virus-Host Interactions. Plos One. 11: e0161914. PMID 27598998 DOI: 10.1371/Journal.Pone.0161914 |
0.471 |
|
| 2016 |
Tremblay MP, Armero VE, Allaire A, Boudreault S, Martenon-Brodeur C, Durand M, Lapointe E, Thibault P, Tremblay-Létourneau M, Perreault JP, Scott MS, Bisaillon M. Global profiling of alternative RNA splicing events provides insights into molecular differences between various types of hepatocellular carcinoma. Bmc Genomics. 17: 683. PMID 27565572 DOI: 10.1186/S12864-016-3029-Z |
0.456 |
|
| 2016 |
Bolduc FC, Garant JM, Allard FE, Perreault JP. Irregular G-quadruplexes found in the untranslated regions of human mRNAs influence translation. The Journal of Biological Chemistry. PMID 27557661 DOI: 10.1074/Jbc.M116.744839 |
0.467 |
|
| 2016 |
Steger G, Perreault JP. Structure and Associated Biological Functions of Viroids. Advances in Virus Research. 94: 141-72. PMID 26997592 DOI: 10.1016/Bs.Aivir.2015.11.002 |
0.388 |
|
| 2015 |
Adkar-Purushothama CR, Perreault JP, Sano T. Analysis of small RNA production patterns among the two potato spindle tuber viroid variants in tomato plants. Genomics Data. 6: 65-6. PMID 26697336 DOI: 10.1016/J.Gdata.2015.08.008 |
0.451 |
|
| 2015 |
Adkar-Purushothama CR, Brosseau C, Giguère T, Sano T, Moffett P, Perreault JP. Small RNA Derived from the Virulence Modulating Region of the Potato spindle tuber viroid Silences callose synthase Genes of Tomato Plants. The Plant Cell. 27: 2178-94. PMID 26290537 DOI: 10.1105/Tpc.15.00523 |
0.481 |
|
| 2015 |
Thandapani P, Song J, Gandin V, Cai Y, Rouleau SG, Garant JM, Boisvert FM, Yu Z, Perreault JP, Topisirovic I, Richard S. Aven recognition of RNA G-quadruplexes regulates translation of the mixed lineage leukemia protooncogenes. Elife. 4. PMID 26267306 DOI: 10.7554/Elife.06234 |
0.411 |
|
| 2015 |
Garant JM, Luce MJ, Scott MS, Perreault JP. G4RNA: an RNA G-quadruplex database. Database : the Journal of Biological Databases and Curation. 2015: bav059. PMID 26200754 DOI: 10.1093/Database/Bav059 |
0.367 |
|
| 2015 |
Rouleau SG, Beaudoin JD, Bisaillon M, Perreault JP. Small antisense oligonucleotides against G-quadruplexes: specific mRNA translational switches. Nucleic Acids Research. 43: 595-606. PMID 25510493 DOI: 10.1093/Nar/Gku1311 |
0.438 |
|
| 2015 |
Thandapani P, Song J, Gandin V, Cai Y, Rouleau SG, Garant J, Boisvert F, Yu Z, Perreault J, Topisirovic I, Richard S. Author response: Aven recognition of RNA G-quadruplexes regulates translation of the mixed lineage leukemia protooncogenes Elife. DOI: 10.7554/Elife.06234.021 |
0.438 |
|
| 2014 |
Giguère T, Adkar-Purushothama CR, Bolduc F, Perreault JP. Elucidation of the structures of all members of the Avsunviroidae family. Molecular Plant Pathology. 15: 767-79. PMID 25346967 DOI: 10.1111/Mpp.12130 |
0.444 |
|
| 2014 |
Scarborough RJ, Lévesque MV, Boudrias-Dalle E, Chute IC, Daniels SM, Ouellette RJ, Perreault JP, Gatignol A. A Conserved Target Site in HIV-1 Gag RNA is Accessible to Inhibition by Both an HDV Ribozyme and a Short Hairpin RNA. Molecular Therapy. Nucleic Acids. 3: e178. PMID 25072692 DOI: 10.1038/Mtna.2014.31 |
0.44 |
|
| 2014 |
Giguère T, Adkar-Purushothama CR, Perreault JP. Comprehensive secondary structure elucidation of four genera of the family Pospiviroidae. Plos One. 9: e98655. PMID 24897295 DOI: 10.1371/Journal.Pone.0098655 |
0.387 |
|
| 2014 |
Jodoin R, Bauer L, Garant JM, Mahdi Laaref A, Phaneuf F, Perreault JP. The folding of 5'-UTR human G-quadruplexes possessing a long central loop. Rna (New York, N.Y.). 20: 1129-41. PMID 24865610 DOI: 10.1261/Rna.044578.114 |
0.398 |
|
| 2014 |
Glouzon JP, Bolduc F, Wang S, Najmanovich RJ, Perreault JP. Deep-sequencing of the peach latent mosaic viroid reveals new aspects of population heterogeneity. Plos One. 9: e87297. PMID 24498066 DOI: 10.1371/Journal.Pone.0087297 |
0.34 |
|
| 2014 |
Brosseau JP, Lucier JF, Lamarche AA, Shkreta L, Gendron D, Lapointe E, Thibault P, Paquet E, Perreault JP, Abou Elela S, Chabot B. Redirecting splicing with bifunctional oligonucleotides. Nucleic Acids Research. 42: e40. PMID 24375754 DOI: 10.1093/Nar/Gkt1287 |
0.418 |
|
| 2014 |
Scarborough RJ, Lévesque MV, Perreault JP, Gatignol A. Design and evaluation of clinically relevant SOFA-HDV ribozymes targeting HIV RNA. Methods in Molecular Biology (Clifton, N.J.). 1103: 31-43. PMID 24318884 DOI: 10.1007/978-1-62703-730-3_3 |
0.371 |
|
| 2014 |
Beaudoin JD, Jodoin R, Perreault JP. New scoring system to identify RNA G-quadruplex folding. Nucleic Acids Research. 42: 1209-23. PMID 24121682 DOI: 10.1093/Nar/Gkt904 |
0.43 |
|
| 2014 |
Gatignol A, Scarborough R, Lévesque M, Boudrias-Dalle E, Chute I, Daniels S, Ouellette R, Perreault J. Towards gene therapy against HIV-1: new therapeutic target in gag RNA accessible to ribozymes and RNA interference molecules Bmc Infectious Diseases. 14. DOI: 10.1186/1471-2334-14-S2-O19 |
0.326 |
|
| 2013 |
Beaudoin JD, Perreault JP. Exploring mRNA 3'-UTR G-quadruplexes: evidence of roles in both alternative polyadenylation and mRNA shortening. Nucleic Acids Research. 41: 5898-911. PMID 23609544 DOI: 10.1093/Nar/Gkt265 |
0.412 |
|
| 2013 |
Beaudoin JD, Jodoin R, Perreault JP. In-line probing of RNA G-quadruplexes. Methods (San Diego, Calif.). 64: 79-87. PMID 23500045 DOI: 10.1016/J.Ymeth.2013.02.017 |
0.487 |
|
| 2012 |
Rouleau SG, Jodoin R, Bisaillon M, Perreault JP. Programming a highly structured ribozyme into complex allostery using RNA oligonucleotides. Acs Chemical Biology. 7: 1802-6. PMID 22950875 DOI: 10.1021/Cb300319M |
0.513 |
|
| 2012 |
Lévesque D, Reymond C, Perreault JP. Characterization of the trans Watson-Crick GU base pair located in the catalytic core of the antigenomic HDV ribozyme. Plos One. 7: e40309. PMID 22768274 DOI: 10.1371/Journal.Pone.0040309 |
0.4 |
|
| 2012 |
Lévesque MV, Perreault JP. Target-induced SOFA-HDV ribozyme. Methods in Molecular Biology (Clifton, N.J.). 848: 369-84. PMID 22315081 DOI: 10.1007/978-1-61779-545-9_23 |
0.467 |
|
| 2012 |
Xu W, Bolduc F, Hong N, Perreault JP. The use of a combination of computer-assisted structure prediction and SHAPE probing to elucidate the secondary structures of five viroids. Molecular Plant Pathology. 13: 666-76. PMID 22243942 DOI: 10.1111/J.1364-3703.2011.00776.X |
0.397 |
|
| 2011 |
Motard J, Rouxel R, Paun A, von Messling V, Bisaillon M, Perreault JP. A novel ribozyme-based prophylaxis inhibits influenza A virus replication and protects from severe disease. Plos One. 6: e27327. PMID 22110627 DOI: 10.1371/Journal.Pone.0027327 |
0.317 |
|
| 2011 |
Lévesque MV, Rouleau SG, Perreault JP. Selection of the most potent specific on/off adaptor-hepatitis delta virus ribozymes for use in gene targeting. Nucleic Acid Therapeutics. 21: 241-52. PMID 21793786 DOI: 10.1089/Nat.2011.0301 |
0.449 |
|
| 2011 |
Dubé A, Bolduc F, Bisaillon M, Perreault JP. Mapping studies of the Peach latent mosaic viroid reveal novel structural features. Molecular Plant Pathology. 12: 688-701. PMID 21726370 DOI: 10.1111/J.1364-3703.2010.00703.X |
0.492 |
|
| 2011 |
Lainé S, Scarborough RJ, Lévesque D, Didierlaurent L, Soye KJ, Mougel M, Perreault JP, Gatignol A. In vitro and in vivo cleavage of HIV-1 RNA by new SOFA-HDV ribozymes and their potential to inhibit viral replication. Rna Biology. 8: 343-53. PMID 21422817 DOI: 10.4161/Rna.8.2.15200 |
0.428 |
|
| 2010 |
Reymond C, Lévesque D, Bisaillon M, Perreault JP. Developing three-dimensional models of putative-folding intermediates of the HDV ribozyme. Structure (London, England : 1993). 18: 1608-16. PMID 21134640 DOI: 10.1016/J.Str.2010.09.024 |
0.486 |
|
| 2010 |
Bergeron L, Perreault JP, Abou Elela S. Short RNA duplexes guide sequence-dependent cleavage by human Dicer. Rna (New York, N.Y.). 16: 2464-73. PMID 20974746 DOI: 10.1261/Rna.2346510 |
0.503 |
|
| 2010 |
Soulière MF, Perreault JP, Bisaillon M. Insights into the molecular determinants involved in cap recognition by the vaccinia virus D10 decapping enzyme. Nucleic Acids Research. 38: 7599-610. PMID 20639534 DOI: 10.1093/Nar/Gkq628 |
0.318 |
|
| 2010 |
Beaudoin JD, Perreault JP. 5'-UTR G-quadruplex structures acting as translational repressors. Nucleic Acids Research. 38: 7022-36. PMID 20571090 DOI: 10.1093/Nar/Gkq557 |
0.387 |
|
| 2010 |
Lévesque MV, Lévesque D, Brière FP, Perreault JP. Investigating a new generation of ribozymes in order to target HCV. Plos One. 5: e9627. PMID 20224783 DOI: 10.1371/Journal.Pone.0009627 |
0.401 |
|
| 2010 |
Bolduc F, Hoareau C, St-Pierre P, Perreault JP. In-depth sequencing of the siRNAs associated with peach latent mosaic viroid infection. Bmc Molecular Biology. 11: 16. PMID 20158907 DOI: 10.1186/1471-2199-11-16 |
0.456 |
|
| 2010 |
Dubé A, Baumstark T, Bisaillon M, Perreault JP. The RNA strands of the plus and minus polarities of peach latent mosaic viroid fold into different structures. Rna (New York, N.Y.). 16: 463-73. PMID 20089682 DOI: 10.1261/Rna.1826710 |
0.356 |
|
| 2010 |
Brosseau JP, Lucier JF, Lapointe E, Durand M, Gendron D, Gervais-Bird J, Tremblay K, Perreault JP, Elela SA. High-throughput quantification of splicing isoforms. Rna (New York, N.Y.). 16: 442-9. PMID 20038630 DOI: 10.1261/Rna.1877010 |
0.404 |
|
| 2009 |
Weinberg Z, Perreault J, Meyer MM, Breaker RR. Exceptional structured noncoding RNAs revealed by bacterial metagenome analysis. Nature. 462: 656-9. PMID 19956260 DOI: 10.1038/Nature08586 |
0.414 |
|
| 2009 |
Dubé A, Bisaillon M, Perreault JP. Identification of proteins from prunus persica that interact with peach latent mosaic viroid. Journal of Virology. 83: 12057-67. PMID 19759139 DOI: 10.1128/Jvi.01151-09 |
0.433 |
|
| 2009 |
Reymond C, Beaudoin JD, Perreault JP. Modulating RNA structure and catalysis: lessons from small cleaving ribozymes. Cellular and Molecular Life Sciences : Cmls. 66: 3937-50. PMID 19718544 DOI: 10.1007/S00018-009-0124-1 |
0.51 |
|
| 2009 |
Reymond C, Bisaillon M, Perreault JP. Monitoring of an RNA multistep folding pathway by isothermal titration calorimetry. Biophysical Journal. 96: 132-40. PMID 19134473 DOI: 10.1016/J.Bpj.2008.09.033 |
0.486 |
|
| 2009 |
St-Pierre P, Hassen IF, Thompson D, Perreault JP. Characterization of the siRNAs associated with peach latent mosaic viroid infection Virology. 383: 178-182. PMID 19068263 DOI: 10.1016/j.virol.2008.11.008 |
0.366 |
|
| 2009 |
Lainé S, Scarborough RJ, Lévesque D, Didierlaurent L, Soye KJ, Mougel M, Perreault J, Gatignol A. Inhibition of HIV-1 expression and replication by SOFA-HDV ribozymes against Tat and Rev mRNA sequences Retrovirology. 6: 47. DOI: 10.1186/1742-4690-6-S2-P47 |
0.36 |
|
| 2008 |
Robichaud GA, Perreault JP, Ouellette RJ. Development of an isoform-specific gene suppression system: the study of the human Pax-5B transcriptional element. Nucleic Acids Research. 36: 4609-20. PMID 18617575 DOI: 10.1093/Nar/Gkn432 |
0.322 |
|
| 2008 |
Beaudoin JD, Perreault JP. Potassium ions modulate a G-quadruplex-ribozyme's activity. Rna (New York, N.Y.). 14: 1018-25. PMID 18456841 DOI: 10.1261/Rna.963908 |
0.371 |
|
| 2008 |
Soulière MF, Perreault JP, Bisaillon M. Kinetic and thermodynamic characterization of the RNA guanylyltransferase reaction. Biochemistry. 47: 3863-74. PMID 18298088 DOI: 10.1021/Bi702054A |
0.45 |
|
| 2008 |
Motard J, Bolduc F, Thompson D, Perreault JP. The peach latent mosaic viroid replication initiation site is located at a universal position that appears to be defined by a conserved sequence. Virology. 373: 362-75. PMID 18190946 DOI: 10.1016/J.Virol.2007.12.010 |
0.389 |
|
| 2008 |
Soulière MF, Perreault JP, Bisaillon M. Magnesium-binding studies reveal fundamental differences between closely related RNA triphosphatases. Nucleic Acids Research. 36: 451-61. PMID 18039706 DOI: 10.1093/Nar/Gkm1067 |
0.427 |
|
| 2007 |
Nehdi A, Perreault J, Beaudoin JD, Perreault JP. A novel structural rearrangement of hepatitis delta virus antigenomic ribozyme. Nucleic Acids Research. 35: 6820-31. PMID 17933779 DOI: 10.1093/Nar/Gkm674 |
0.48 |
|
| 2007 |
Lévesque D, Brière FP, Perreault JP. A modern mode of activation for nucleic acid enzymes. Plos One. 2: e673. PMID 17653287 DOI: 10.1371/Journal.Pone.0000673 |
0.359 |
|
| 2007 |
Asif-Ullah M, Lévesque M, Robichaud G, Perreault JP. Development of ribozyme-based gene-inactivations; the example of the hepatitis delta virus ribozyme. Current Gene Therapy. 7: 205-16. PMID 17584038 DOI: 10.2174/156652307780859008 |
0.493 |
|
| 2007 |
Perreault J, Perreault JP, Boire G. Ro-associated Y RNAs in metazoans: evolution and diversification. Molecular Biology and Evolution. 24: 1678-89. PMID 17470436 DOI: 10.1093/Molbev/Msm084 |
0.475 |
|
| 2007 |
Lévesque D, Beaudoin JD, Roy S, Perreault JP. In vitro selection and characterization of RNA aptamers binding thyroxine hormone. The Biochemical Journal. 403: 129-38. PMID 17163839 DOI: 10.1042/Bj20061216 |
0.473 |
|
| 2007 |
Reymond C, Ouellet J, Bisaillon M, Perreault JP. Examination of the folding pathway of the antigenomic hepatitis delta virus ribozyme reveals key interactions of the L3 loop. Rna (New York, N.Y.). 13: 44-54. PMID 17105991 DOI: 10.1261/Rna.263407 |
0.364 |
|
| 2006 |
Fekih Hassen I, Massart S, Motard J, Roussel S, Parisi O, Kummert J, Fakhfakh H, Marrakchi M, Perreault JP, Jijakli MH. Molecular features of new Peach Latent Mosaic Viroid variants suggest that recombination may have contributed to the evolution of this infectious RNA. Virology. 360: 50-7. PMID 17113618 DOI: 10.1016/J.VIROL.2006.10.021 |
0.328 |
|
| 2006 |
Lucier JF, Bergeron LJ, Brière FP, Ouellette R, Elela SA, Perreault JP. RiboSubstrates: a web application addressing the cleavage specificities of ribozymes in designated genomes. Bmc Bioinformatics. 7: 480. PMID 17076887 DOI: 10.1186/1471-2105-7-480 |
0.459 |
|
| 2006 |
Nehdi A, Perreault JP. Unbiased in vitro selection reveals the unique character of the self-cleaving antigenomic HDV RNA sequence. Nucleic Acids Research. 34: 584-92. PMID 16432262 DOI: 10.1093/Nar/Gkj463 |
0.497 |
|
| 2006 |
Fiola K, Perreault JP, Cousineau B. Gene targeting in the Gram-Positive bacterium Lactococcus lactis, using various delta ribozymes. Applied and Environmental Microbiology. 72: 869-79. PMID 16391129 DOI: 10.1128/Aem.72.1.869-879.2006 |
0.382 |
|
| 2006 |
Elleuch A, Khouaja FD, Hamdi I, Bsais N, Perreault J, Marrakchi M, Fakhfakh H. Sequence analysis of three citrus viroids infecting a single Tunisian citrus tree (Citrus, reticulata, Clementine) Genetics and Molecular Biology. 29: 705-710. DOI: 10.1590/S1415-47572006000400020 |
0.302 |
|
| 2005 |
Bergeron LJ, Reymond C, Perreault JP. Functional characterization of the SOFA delta ribozyme. Rna (New York, N.Y.). 11: 1858-68. PMID 16251383 DOI: 10.1261/Rna.2112705 |
0.413 |
|
| 2005 |
Landry P, Perreault JP. Identification of a peach latent mosaic viroid hairpin able to act as a Dicer-like substrate. Journal of Virology. 79: 6540-3. PMID 15858039 DOI: 10.1128/Jvi.79.10.6540-6543.2005 |
0.431 |
|
| 2005 |
Perreault J, Noël JF, Brière F, Cousineau B, Lucier JF, Perreault JP, Boire G. Retropseudogenes derived from the human Ro/SS-A autoantigen-associated hY RNAs. Nucleic Acids Research. 33: 2032-41. PMID 15817567 DOI: 10.1093/Nar/Gki504 |
0.467 |
|
| 2005 |
Bergeron LJ, Perreault JP. Target-dependent on/off switch increases ribozyme fidelity. Nucleic Acids Research. 33: 1240-8. PMID 15731344 DOI: 10.1093/Nar/Gki278 |
0.504 |
|
| 2004 |
Ouellet J, Perreault JP. Cross-linking experiments reveal the presence of novel structural features between a hepatitis delta virus ribozyme and its substrate. Rna (New York, N.Y.). 10: 1059-72. PMID 15208442 DOI: 10.1261/Rna.7230604 |
0.394 |
|
| 2004 |
Pelchat M, Perreault JP. Binding site of Escherichia coli RNA polymerase to an RNA promoter. Biochemical and Biophysical Research Communications. 319: 636-42. PMID 15178453 DOI: 10.1016/J.Bbrc.2004.05.044 |
0.478 |
|
| 2004 |
D'Anjou F, Bergeron LJ, Larbi NB, Fournier I, Salzet M, Perreault JP, Day R. Silencing of SPC2 expression using an engineered delta ribozyme in the mouse betaTC-3 endocrine cell line. The Journal of Biological Chemistry. 279: 14232-9. PMID 14734558 DOI: 10.1074/Jbc.M310632200 |
0.381 |
|
| 2004 |
Landry P, Thompson D, Perreault J. The role of viroids in gene silencing: the model case of Peach latent mosaic viroid Canadian Journal of Plant Pathology-Revue Canadienne De Phytopathologie. 26: 31-38. DOI: 10.1080/07060660409507109 |
0.498 |
|
| 2003 |
Bussière F, Ledû S, Girard M, Héroux M, Perreault JP, Matton DP. Development of an efficient cis-trans-cis ribozyme cassette to inactivate plant genes. Plant Biotechnology Journal. 1: 423-35. PMID 17134401 DOI: 10.1046/J.1467-7652.2003.00039.X |
0.74 |
|
| 2003 |
Bergeron LJ, Ouellet J, Perreault JP. Ribozyme-based gene-inactivation systems require a fine comprehension of their substrate specificities; the case of delta ribozyme. Current Medicinal Chemistry. 10: 2589-97. PMID 14529473 DOI: 10.2174/0929867033456486 |
0.504 |
|
| 2003 |
Deschênes P, Ouellet J, Perreault J, Perreault JP. Formation of the P1.1 pseudoknot is critical for both the cleavage activity and substrate specificity of an antigenomic trans-acting hepatitis delta ribozyme. Nucleic Acids Research. 31: 2087-96. PMID 12682359 DOI: 10.1093/Nar/Gkg307 |
0.426 |
|
| 2003 |
Pelchat M, Rocheleau L, Perreault J, Perreault JP. SubViral RNA: a database of the smallest known auto-replicable RNA species. Nucleic Acids Research. 31: 444-5. PMID 12520047 DOI: 10.1093/Nar/Gkg026 |
0.461 |
|
| 2002 |
Bergeron LJ, Perreault JP. Development and comparison of procedures for the selection of delta ribozyme cleavage sites within the hepatitis B virus. Nucleic Acids Research. 30: 4682-91. PMID 12409459 DOI: 10.1093/Nar/Gkf598 |
0.451 |
|
| 2002 |
Fiola K, Perreault JP. Kinetic and binding analysis of the catalytic involvement of ribose moieties of a trans-acting delta ribozyme. The Journal of Biological Chemistry. 277: 26508-16. PMID 12015324 DOI: 10.1074/Jbc.M203468200 |
0.479 |
|
| 2002 |
Pelchat M, Grenier C, Perreault JP. Characterization of a viroid-derived RNA promoter for the DNA-dependent RNA polymerase from Escherichia coli. Biochemistry. 41: 6561-71. PMID 12009921 DOI: 10.1021/Bi025595K |
0.513 |
|
| 2002 |
Lévesque D, Choufani S, Perreault JP. Delta ribozyme benefits from a good stability in vitro that becomes outstanding in vivo. Rna (New York, N.Y.). 8: 464-77. PMID 11991641 DOI: 10.1017/S1355838202020289 |
0.338 |
|
| 2002 |
Elleuch A, Fakhfakh H, Pelchat M, Landry P, Marrakchi M, Perreault JP. Sequencing of Australian Grapevine Viroid and Yellow Speckle Viroid isolated from a Tunisian grapevine without passage in an indicator plant European Journal of Plant Pathology. 108: 815-820. DOI: 10.1023/A:1020855405948 |
0.315 |
|
| 2001 |
Pelchat M, Coté F, Perreault JP. Study of the polymerization step of the rolling circle replication of peach latent mosaic viroid. Archives of Virology. 146: 1753-63. PMID 11699960 DOI: 10.1007/S007050170061 |
0.431 |
|
| 2001 |
Côté F, Lévesque D, Perreault JP. Natural 2',5'-phosphodiester bonds found at the ligation sites of peach latent mosaic viroid. Journal of Virology. 75: 19-25. PMID 11119569 DOI: 10.1128/Jvi.75.1.19-25.2001 |
0.67 |
|
| 2000 |
Poisson V, Ménard DB, Frost É, Perreault J. A Canadian isolate of hepatitis D (delta) virus. Canadian Journal of Gastroenterology & Hepatology. 14: 36-40. PMID 10938503 DOI: 10.1155/2000/397947 |
0.408 |
|
| 2000 |
Pelchat M, Lévesque D, Ouellet J, Laurendeau S, Lévesque S, Lehoux J, Thompson DA, Eastwell KC, Skrzeczkowski LJ, Perreault JP. Sequencing of peach latent mosaic viroid variants from nine North American peach cultivars shows that this RNA folds into a complex secondary structure. Virology. 271: 37-45. PMID 10814568 DOI: 10.1006/Viro.2000.0288 |
0.342 |
|
| 2000 |
Ananvoranich S, Perreault JP. The kinetics and magnesium requirements for the folding of antigenomic δ ribozymes Biochemical and Biophysical Research Communications. 270: 600-607. PMID 10753670 DOI: 10.1006/Bbrc.2000.2465 |
0.358 |
|
| 2000 |
Deschênes P, Lafontaine DA, Charland S, Perreault JP. Nucleotides -1 to -4 of hepatitis delta ribozyme substrate increase the specificity of ribozyme cleavage. Antisense & Nucleic Acid Drug Development. 10: 53-61. PMID 10726661 DOI: 10.1089/Oli.1.2000.10.53 |
0.362 |
|
| 2000 |
Bussière F, Ouellet J, Côté F, Lévesque D, Perreault JP. Mapping in solution shows the peach latent mosaic viroid to possess a new pseudoknot in a complex, branched secondary structure. Journal of Virology. 74: 2647-54. PMID 10684279 DOI: 10.1128/JVI.74.6.2647-2654.2000 |
0.699 |
|
| 2000 |
Pelchat M, Deschênes P, Perreault JP. The database of the smallest known auto-replicable RNA species: viroids and viroid-like RNAs. Nucleic Acids Research. 28: 179-80. PMID 10592219 DOI: 10.1093/Nar/28.1.179 |
0.483 |
|
| 1999 |
Lafontaine DA, Ananvoranich S, Perreault JP. Presence of a coordinated metal ion in a trans-acting antigenomic delta ribozyme Nucleic Acids Research. 27: 3236-3243. PMID 10454623 DOI: 10.1093/Nar/27.15.3236 |
0.342 |
|
| 1999 |
Bussière F, Lehoux J, Thompson DA, Skrzeczkowski LJ, Perreault JP. Subcellular localization and rolling circle replication of peach latent mosaic viroid: Hallmarks of group A viroids Journal of Virology. 73: 6353-6360. PMID 10400727 DOI: 10.1128/JVI.73.8.6353-6360.1999 |
0.308 |
|
| 1999 |
Ananvoranich S, Lafontaine DA, Perreault JP. Mutational analysis of the antigenomic trans-acting delta ribozyme: The alterations of the middle nucleotides located on the P1 stem Nucleic Acids Research. 27: 1473-1479. PMID 10037808 DOI: 10.1093/Nar/27.6.1473 |
0.325 |
|
| 1999 |
Roy G, Ananvoranich S, Perreault JP. Delta ribozyme has the ability to cleave in trans an mRNA Nucleic Acids Research. 27: 942-948. PMID 9927724 DOI: 10.1093/Nar/27.4.942 |
0.439 |
|
| 1999 |
Lafontaine DA, Deschênes P, Bussière F, Poisson V, Perreault JP. The viroid and viroid-like RNA database. Nucleic Acids Research. 27: 186-7. PMID 9847175 DOI: 10.1093/Nar/27.1.186 |
0.478 |
|
| 1998 |
Mercure S, Lafontaine D, Ananvoranich S, Perreault JP. Kinetic analysis of δ ribozyme cleavage Biochemistry. 37: 16975-16982. PMID 9836591 DOI: 10.1021/Bi9809775 |
0.344 |
|
| 1998 |
Lafontaine DA, Mercure S, Perreault JP. Identification of a Crohn's disease specific transcript with potential as a diagnostic marker Gut. 42: 878-882. PMID 9691930 |
0.303 |
|
| 1998 |
Ananvoranich S, Perreault JP. Substrate specificity of δ ribozyme cleavage Journal of Biological Chemistry. 273: 13182-13188. PMID 9582360 DOI: 10.1074/Jbc.273.21.13182 |
0.363 |
|
| 1997 |
Perreault JP. Characterization of stable RNAs from the resected intestinal tissues of individuals with either Crohn's disease or ulcerative colitis Biochemistry and Cell Biology. 75: 789-794. PMID 9599669 DOI: 10.1139/O97-065 |
0.441 |
|
| 1997 |
Côté F, Perreault JP. Peach latent mosaic viroid is locked by a 2',5'-phosphodiester bond produced by in vitro self-ligation. Journal of Molecular Biology. 273: 533-43. PMID 9356244 DOI: 10.1006/Jmbi.1997.1355 |
0.699 |
|
| 1997 |
Lafontaine DA, Mercure S, Perreault J. Update of the viroid and viroid-like sequence database: addition of a hepatitis delta virus RNA section Nucleic Acids Research. 25: 123-125. PMID 9016518 DOI: 10.1093/Nar/25.1.123 |
0.449 |
|
| 1996 |
Bussière F, Lafontaine D, Perreault JP. Compilation and analysis of viroid and viroid-like RNA sequences. Nucleic Acids Research. 24: 1793-8. PMID 8657556 DOI: 10.1093/Nar/24.10.1793 |
0.447 |
|
| 1995 |
Bussière F, Lafontaine D, Côté F, Beaudry D, Perreault JP. Evidence for a model ancestral viroid. Nucleic Acids Symposium Series. 143-4. PMID 8643352 |
0.361 |
|
| 1995 |
Beaudry D, Busière F, Lareau F, Lessard C, Perreault JP. The RNA of both polarities of the peach latent mosaic viroid self-cleaves in vitro solely by single hammerhead structures. Nucleic Acids Research. 23: 745-52. PMID 7708488 DOI: 10.1093/Nar/23.5.745 |
0.477 |
|
| 1995 |
Lafontaine D, Beaudry D, Marquis P, Perreault JP. Intra- and Intermolecular Nonenzymatic Ligations Occur within Transcripts Derived from the Peach Latent Mosaic Viroid Virology. 212: 705-709. PMID 7571440 DOI: 10.1006/Viro.1995.1528 |
0.448 |
|
| 1992 |
Perreault JP, Altman S. Important 2′-hydroxyl groups in model substrates for M1 RNA, the catalytic RNA subunit of RNase P from Escherichia coli Journal of Molecular Biology. 226: 399-409. PMID 1379304 DOI: 10.1016/0022-2836(92)90955-J |
0.358 |
|
| 1991 |
Perreault JP. Relationship between 2′-hydroxyls and magnesium binding in the hammerhead RNA domain: A model for ribozyme catalysis Biochemistry. 30: 4020-4025. PMID 1708285 DOI: 10.1021/Bi00230A029 |
0.355 |
|
| 1991 |
Perreault JP, Altman S. The ribonuclease P.: A real RNA enzyme in vitro Medecine/Sciences. 7: 847-850. |
0.304 |
|
| 1990 |
Perreault JP, Wu TF, Cousineau B, Ogilvie KK, Cedergren R. Mixed deoxyribo- and ribo-oligonucleotides with catalytic activity. Nature. 344: 565-7. PMID 2181322 DOI: 10.1038/344565A0 |
0.435 |
|
| 1990 |
Bratty J, Wu TF, Nicoghosian K, Ogilvie KK, Perreault JP, Keith G, Cedergren R. Characterization of a chemically synthesized RNA having the sequence of the yeast initiator tRNA(Met). Febs Letters. 269: 60-4. PMID 2117559 DOI: 10.1016/0014-5793(90)81118-8 |
0.381 |
|
| 1989 |
Perreault JP, Pon RT, Jiang MY, Usman N, Pika J, Ogilvie KK, Cedergren R. The synthesis and functional evaluation of RNA and DNA polymers having the sequence of Escherichia coli tRNA(fMet). European Journal of Biochemistry / Febs. 186: 87-93. PMID 2480897 DOI: 10.1111/J.1432-1033.1989.Tb15181.X |
0.312 |
|
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