Sandor Vajda - Publications

Boston University, Boston, MA, United States 
Molecular Physics, Biomedical Engineering, Biochemistry

300 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Lensink MF, Brysbaert G, Mauri T, Nadzirin N, Velankar S, Chaleil RAG, Clarence T, Bates PA, Kong R, Liu B, Yang G, Liu M, Shi H, Lu X, Chang S, ... ... Vajda S, et al. Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment. Proteins. PMID 34453465 DOI: 10.1002/prot.26222  1
2021 Egbert M, Ghani U, Ashizawa R, Kotelnikov S, Nguyen T, Desta I, Hashemi N, Padhorny D, Kozakov D, Vajda S. Assessing the binding properties of CASP14 targets and models. Proteins. PMID 34368994 DOI: 10.1002/prot.26209  1
2021 Bajusz D, Wade WS, Satała G, Bojarski AJ, Ilaš J, Ebner J, Grebien F, Papp H, Jakab F, Douangamath A, Fearon D, von Delft F, Schuller M, Ahel I, Wakefield A, ... Vajda S, et al. Exploring protein hotspots by optimized fragment pharmacophores. Nature Communications. 12: 3201. PMID 34045440 DOI: 10.1038/s41467-021-23443-y  1
2021 Egbert M, Porter KA, Ghani U, Kotelnikov S, Nguyen T, Ashizawa R, Kozakov D, Vajda S. Conservation of binding properties in protein models. Computational and Structural Biotechnology Journal. 19: 2549-2566. PMID 34025942 DOI: 10.1016/j.csbj.2021.04.048  1
2021 Sotudian S, Desta IT, Hashemi N, Zarbafian S, Kozakov D, Vakili P, Vajda S, Paschalidis IC. Improved cluster ranking in protein-protein docking using a regression approach. Computational and Structural Biotechnology Journal. 19: 2269-2278. PMID 33995918 DOI: 10.1016/j.csbj.2021.04.028  1
2021 Vajda S, Porter KA, Kozakov D. Progress toward improved understanding of antibody maturation. Current Opinion in Structural Biology. 67: 226-231. PMID 33610066 DOI: 10.1016/  1
2020 Wakefield AE, Yueh C, Beglov D, Castilho MS, Kozakov D, Keserű GM, Whitty A, Vajda S. Benchmark Sets for Binding Hot Spot Identification in Fragment-Based Ligand Discovery. Journal of Chemical Information and Modeling. PMID 33291870 DOI: 10.1021/acs.jcim.0c00877  1
2020 Desta IT, Porter KA, Xia B, Kozakov D, Vajda S. Performance and Its Limits in Rigid Body Protein-Protein Docking. Structure (London, England : 1993). PMID 32649857 DOI: 10.1016/J.Str.2020.06.006  1
2020 Padhorny D, Porter KA, Ignatov M, Alekseenko A, Beglov D, Kotelnikov S, Ashizawa R, Desta I, Alam N, Sun Z, Brini E, Dill K, Furman OS, Vajda S, Kozakov D. ClusPro in rounds 38-45 of CAPRI: Toward combining template-based methods with free docking. Proteins. PMID 32142178 DOI: 10.1002/Prot.25887  1
2019 Khramushin A, Marcu O, Alam N, Shimony O, Padhorny D, Brini E, Dill K, Vajda S, Kozakov D, Schueler-Furman O. Modeling beta sheet peptide-protein interactions: Rosetta FlexPepDock in CAPRI Rounds 38-45. Proteins. PMID 31891416 DOI: 10.1002/Prot.25871  1
2019 Alekseenko A, Kotelnikov S, Ignatov M, Egbert M, Kholodov Y, Vajda S, Kozakov D. ClusPro LigTBM: Automated Template-Based Small Molecule Docking. Journal of Molecular Biology. PMID 31863748 DOI: 10.1016/J.Jmb.2019.12.011  1
2019 Zhong M, Lynch AJ, Muellers SN, Jehle S, Luo L, Hall DR, Iwase R, Carolan JP, Egbert M, Wakefield A, Streu K, Harvey CM, Ortet PC, Kozakov D, Vajda S, et al. Interaction Energetics and Druggability of the Protein-Protein Interaction between Kelch-like ECH-associated Protein 1 (KEAP1) and Nuclear Factor, Erythroid 2 Like 2 (Nrf2). Biochemistry. PMID 31851823 DOI: 10.1021/Acs.Biochem.9B00943  1
2019 Sun Z, Wakefield AE, Kolossvary I, Beglov D, Vajda S. Structure-Based Analysis of Cryptic-Site Opening. Structure (London, England : 1993). PMID 31810712 DOI: 10.1016/J.Str.2019.11.007  1
2019 Lensink MF, Brysbaert G, Nadzirin N, Velankar S, Chaleil RAG, Gerguri T, Bates PA, Laine E, Carbone A, Grudinin S, Kong R, Liu RR, Xu XM, Shi H, Chang S, ... ... Vajda S, et al. Blind prediction of homo- and hetero- protein complexes: The CASP13-CAPRI experiment. Proteins. PMID 31612567 DOI: 10.1002/Prot.25838  1
2019 Chu J, Zhang W, Cencic R, Devine WG, Beglov D, Henkel T, Brown LE, Vajda S, Porco JA, Pelletier J. Amidino-Rocaglates: A Potent Class of eIF4A Inhibitors. Cell Chemical Biology. PMID 31519508 DOI: 10.1016/J.Chembiol.2019.08.008  1
2019 Porter KA, Padhorny D, Desta I, Ignatov M, Beglov D, Kotelnikov S, Sun Z, Alekseenko A, Anishchenko I, Cong Q, Ovchinnikov S, Baker D, Vajda S, Kozakov D. Template-Based Modeling by ClusPro in CASP13 and the Potential for Using Co-evolutionary Information in Docking. Proteins. PMID 31444975 DOI: 10.1002/Prot.25808  1
2019 Vajda S, Emili A. Mapping global protein contacts. Science (New York, N.Y.). 365: 120-121. PMID 31296755 DOI: 10.1126/Science.Aay1440  0.01
2019 Yueh C, Rettenmaier J, Xia B, Hall DR, Alekseenko A, Porter KA, Barkovich K, Keseru G, Whitty A, Wells JA, Vajda S, Kozakov D. Kinase Atlas: Druggability Analysis of Potential Allosteric Sites in Kinases. Journal of Medicinal Chemistry. PMID 31274316 DOI: 10.1021/Acs.Jmedchem.9B00089  1
2019 Egbert M, Whitty A, Keseru GM, Vajda S. Why some targets benefit from beyond rule of five drugs. Journal of Medicinal Chemistry. PMID 31188592 DOI: 10.1021/Acs.Jmedchem.8B01732  1
2019 Froes TQ, Baldini RL, Vajda S, Castilho MS. Structure-based druggability assessment of anti-virulence targets from Pseudomonas aeruginosa. Current Protein & Peptide Science. PMID 31038064 DOI: 10.2174/1389203720666190417120758  1
2019 Wakefield AE, Mason JS, Vajda S, Keserű GM. Analysis of tractable allosteric sites in G protein-coupled receptors. Scientific Reports. 9: 6180. PMID 30992500 DOI: 10.1038/S41598-019-42618-8  0.4
2019 Porter KA, Desta I, Kozakov D, Vajda S. What method to use for protein-protein docking? Current Opinion in Structural Biology. 55: 1-7. PMID 30711743 DOI: 10.1016/J.Sbi.2018.12.010  1
2019 Trilles R, Beglov D, Chen Q, He H, Wireman R, Reed A, Chennamadhavuni S, Panek JS, Brown LE, Vajda S, Porco JA, Kelley MR, Georgiadis MM. Discovery of macrocyclic inhibitors of Apurinic/apyrimidinic endonuclease 1. Journal of Medicinal Chemistry. PMID 30653918 DOI: 10.1021/Acs.Jmedchem.8B01529  1
2018 Vajda S, Beglov D, Wakefield AE, Egbert M, Whitty A. Cryptic binding sites on proteins: definition, detection, and druggability. Current Opinion in Chemical Biology. 44: 1-8. PMID 29800865 DOI: 10.1016/J.Cbpa.2018.05.003  1
2018 Zarbafian S, Moghadasi M, Roshandelpoor A, Nan F, Li K, Vakli P, Vajda S, Kozakov D, Paschalidis IC. Protein docking refinement by convex underestimation in the low-dimensional subspace of encounter complexes. Scientific Reports. 8: 5896. PMID 29650980 DOI: 10.1038/S41598-018-23982-3  1
2018 Beglov D, Hall DR, Wakefield AE, Luo L, Allen KN, Kozakov D, Whitty A, Vajda S. Exploring the structural origins of cryptic sites on proteins. Proceedings of the National Academy of Sciences of the United States of America. PMID 29581267 DOI: 10.1073/Pnas.1711490115  1
2017 Kozakov D, Hall DR, Xia B, Porter KA, Padhorny D, Yueh C, Beglov D, Vajda S. The ClusPro web server for protein-protein docking. Nature Protocols. 12: 255-278. PMID 28079879 DOI: 10.1038/Nprot.2016.169  1
2016 Vajda S, Yueh C, Beglov D, Bohnuud T, Mottarella SE, Xia B, Hall DR, Kozakov D. New Additions to the ClusPro Server Motivated by CAPRI. Proteins. PMID 27936493 DOI: 10.1002/Prot.25219  1
2016 Yueh C, Hall DR, Xia B, Padhorny D, Kozakov D, Vajda S. ClusPro-DC: Dimer Classification by the Cluspro Server for Protein-Protein Docking. Journal of Molecular Biology. PMID 27771482 DOI: 10.1016/J.Jmb.2016.10.019  1
2016 Padhorny D, Kazennov A, Zerbe BS, Porter KA, Xia B, Mottarella SE, Kholodov Y, Ritchie DW, Vajda S, Kozakov D. Protein-protein docking by fast generalized Fourier transforms on 5D rotational manifolds. Proceedings of the National Academy of Sciences of the United States of America. PMID 27412858 DOI: 10.1073/Pnas.1603929113  1
2016 Xia B, Vajda S, Kozakov D. Accounting for pairwise distance restraints in FFT based protein-protein docking. Bioinformatics (Oxford, England). PMID 27357172 DOI: 10.1093/Bioinformatics/Btw306  1
2016 Im W, Liang J, Olson A, Zhou HX, Vajda S, Vakser IA. Challenges in structural approaches to cell modeling. Journal of Molecular Biology. PMID 27255863 DOI: 10.1016/J.Jmb.2016.05.024  1
2016 Bohnuud T, Luo L, Wodak SJ, Bonvin AM, Weng Z, Vajda S, Schueler-Furman O, Kozakov D. A benchmark testing ground for integrating homology modeling and protein docking. Proteins. PMID 27172383 DOI: 10.1002/Prot.25063  1
2016 Lensink MF, Velankar S, Kryshtafovych A, Huang SY, Schneidman-Duhovny D, Sali A, Segura J, Fernandez-Fuentes N, Viswanath S, Elber R, Grudinin S, Popov P, Neveu E, Lee H, Baek M, ... ... Vajda S, et al. Prediction of homo- and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment. Proteins. PMID 27122118 DOI: 10.1002/Prot.25007  1
2016 Whitty A, Zhong M, Viarengo L, Beglov D, Hall DR, Vajda S. Quantifying the chameleonic properties of macrocycles and other high-molecular-weight drugs. Drug Discovery Today. PMID 26891978 DOI: 10.1016/J.Drudis.2016.02.005  1
2016 Mamonov AB, Moghadasi M, Mirzaei H, Zarbafian S, Grove LE, Bohnuud T, Vakili P, Ch Paschalidis I, Vajda S, Kozakov D. Focused grid-based resampling for protein docking and mapping. Journal of Computational Chemistry. PMID 26837000 DOI: 10.1002/Jcc.24273  1
2016 Santosh KC, Vajda S, Antani S, Thoma GR. Edge map analysis in chest X-rays for automatic pulmonary abnormality screening International Journal of Computer Assisted Radiology and Surgery. 1-10. DOI: 10.1007/s11548-016-1359-6  1
2015 Lukose V, Luo L, Kozakov D, Vajda S, Allen KN, Imperiali B. Conservation and Covariance in Small Bacterial Phosphoglycosyltransferases Identifies the Functional Catalytic Core. Biochemistry. PMID 26600273 DOI: 10.1021/Acs.Biochem.5B01086  1
2015 Hall DR, Kozakov D, Whitty A, Vajda S. Lessons from Hot Spot Analysis for Fragment-Based Drug Discovery. Trends in Pharmacological Sciences. 36: 724-36. PMID 26538314 DOI: 10.1016/J.Tips.2015.08.003  1
2015 Mirzaei H, Zarbafian S, Villar E, Mottarella S, Beglov D, Vajda S, Paschalidis IC, Vakili P, Kozakov D. Energy minimization on manifolds for docking flexible molecules. Journal of Chemical Theory and Computation. 11: 1063-1076. PMID 26478722 DOI: 10.1021/Ct500155T  1
2015 Vajda S, Whitty A, Kozakov D. Fragments and hot spots in drug discovery. Oncotarget. 6: 18740-1. PMID 26300051 DOI: 10.18632/Oncotarget.4968  1
2015 Kozakov D, Hall DR, Napoleon RL, Yueh C, Whitty A, Vajda S. New Frontiers in Druggability. Journal of Medicinal Chemistry. PMID 26230724 DOI: 10.1021/Acs.Jmedchem.5B00586  1
2015 Tyo EC, Vajda S. Catalysis by clusters with precise numbers of atoms. Nature Nanotechnology. 10: 577-88. PMID 26139144 DOI: 10.1038/Nnano.2015.140  1
2015 Kozakov D, Vakili P, Paschalidis ICh, Vajda S. 46 Encounter complexes and dimensionality reduction in protein-protein association. Journal of Biomolecular Structure & Dynamics. 33: 32. PMID 26103257 DOI: 10.1080/07391102.2015.1032595  1
2015 Xia B, Mamonov A, Leysen S, Allen KN, Strelkov SV, Paschalidis ICh, Vajda S, Kozakov D. Accounting for observed small angle X-ray scattering profile in the protein-protein docking server cluspro. Journal of Computational Chemistry. 36: 1568-72. PMID 26095982 DOI: 10.1002/Jcc.23952  1
2015 Kozakov D, Hall DR, Jehle S, Luo L, Ochiana SO, Jones EV, Pollastri M, Allen KN, Whitty A, Vajda S. Ligand deconstruction: Why some fragment binding positions are conserved and others are not. Proceedings of the National Academy of Sciences of the United States of America. 112: E2585-94. PMID 25918377 DOI: 10.1073/Pnas.1501567112  1
2015 Vajda S, Rangoni Y, Cecotti H. Semi-automatic ground truth generation using unsupervised clustering and limited manual labeling: Application to handwritten character recognition. Pattern Recognition Letters. 58: 23-28. PMID 25870463 DOI: 10.1016/J.Patrec.2015.02.001  1
2015 Kozakov D, Grove LE, Hall DR, Bohnuud T, Mottarella SE, Luo L, Xia B, Beglov D, Vajda S. The FTMap family of web servers for determining and characterizing ligand-binding hot spots of proteins. Nature Protocols. 10: 733-55. PMID 25855957 DOI: 10.1038/Nprot.2015.043  1
2015 Moghadasi M, Mirzaei H, Mamonov A, Vakili P, Vajda S, Paschalidis ICh, Kozakov D. The impact of side-chain packing on protein docking refinement. Journal of Chemical Information and Modeling. 55: 872-81. PMID 25714358 DOI: 10.1021/Ci500380A  1
2015 Vajda S, Plötz T, Fink GA. Camera-based whiteboard reading for understanding mind maps International Journal of Pattern Recognition and Artificial Intelligence. 29. DOI: 10.1142/S0218001415530031  1
2015 Lee S, Lee B, Seifert S, Winans RE, Vajda S. Fischer-Tropsch synthesis at a low pressure on subnanometer cobalt oxide clusters: The effect of cluster size and support on activity and selectivity Journal of Physical Chemistry C. 119: 11210-11216. DOI: 10.1021/Jp512157D  1
2015 Vajda S, White MG. Catalysis Applications of Size-Selected Cluster Deposition Acs Catalysis. 5: 7152-7176. DOI: 10.1021/Acscatal.5B01816  1
2014 Nan F, Moghadasi M, Vakili P, Vajda S, Kozakov D, Ch Paschalidis I. A Subspace Semi-Definite programming-based Underestimation (SSDU) method for stochastic global optimization in protein docking. Proceedings of the ... Ieee Conference On Decision & Control / Ieee Control Systems Society. Ieee Conference On Decision & Control. 2014: 4623-4628. PMID 25914440 DOI: 10.1109/CDC.2014.7040111  1
2014 Vakili P, Mirzaei H, Zarbafian S, Paschalidis IC, Kozakov D, Vajda S. Optimization on the space of rigid and flexible motions: an alternative manifold optimization approach. Proceedings of the ... Ieee Conference On Decision & Control / Ieee Control Systems Society. Ieee Conference On Decision & Control. 2014: 5825-5830. PMID 25774073 DOI: 10.1109/CDC.2014.7040301  1
2014 van Bokhoven JA, Vajda S. Size selected clusters and particles: from physical chemistry and chemical physics to catalysis. Physical Chemistry Chemical Physics : Pccp. 16: 26418-20. PMID 25373845 DOI: 10.1039/c4cp90163k  1
2014 Chowdhury R, Beglov D, Moghadasi M, Paschalidis IC, Vakili P, Vajda S, Bajaj C, Kozakov D. Efficient Maintenance and Update of Nonbonded Lists in Macromolecular Simulations. Journal of Chemical Theory and Computation. 10: 4449-4454. PMID 25328494 DOI: 10.1021/Ct400474W  1
2014 Bohnuud T, Kozakov D, Vajda S. Evidence of conformational selection driving the formation of ligand binding sites in protein-protein interfaces. Plos Computational Biology. 10: e1003872. PMID 25275445 DOI: 10.1371/Journal.Pcbi.1003872  1
2014 Parks AJ, Pollastri MP, Hahn ME, Stanford EA, Novikov O, Franks DG, Haigh SE, Narasimhan S, Ashton TD, Hopper TG, Kozakov D, Beglov D, Vajda S, Schlezinger JJ, Sherr DH. In silico identification of an aryl hydrocarbon receptor antagonist with biological activity in vitro and in vivo. Molecular Pharmacology. 86: 593-608. PMID 25159092 DOI: 10.1124/Mol.114.093369  1
2014 Pillai HK, Fang M, Beglov D, Kozakov D, Vajda S, Stapleton HM, Webster TF, Schlezinger JJ. Ligand binding and activation of PPARγ by Firemaster® 550: effects on adipogenesis and osteogenesis in vitro. Environmental Health Perspectives. 122: 1225-32. PMID 25062436 DOI: 10.1289/Ehp.1408111  1
2014 Villar EA, Beglov D, Chennamadhavuni S, Porco JA, Kozakov D, Vajda S, Whitty A. How proteins bind macrocycles. Nature Chemical Biology. 10: 723-31. PMID 25038790 DOI: 10.1038/Nchembio.1584  1
2014 Mottarella SE, Beglov D, Beglova N, Nugent MA, Kozakov D, Vajda S. Docking server for the identification of heparin binding sites on proteins. Journal of Chemical Information and Modeling. 54: 2068-78. PMID 24974889 DOI: 10.1021/Ci500115J  1
2014 Bogorad AM, Xia B, Sandor DG, Mamonov AB, Cafarella TR, Jehle S, Vajda S, Kozakov D, Marintchev A. Insights into the architecture of the eIF2Bα/β/δ regulatory subcomplex. Biochemistry. 53: 3432-45. PMID 24811713 DOI: 10.1021/Bi500346U  1
2014 Kozakov D, Li K, Hall DR, Beglov D, Zheng J, Vakili P, Schueler-Furman O, Paschalidis ICh, Clore GM, Vajda S. Encounter complexes and dimensionality reduction in protein-protein association. Elife. 3: e01370. PMID 24714491 DOI: 10.7554/Elife.01370  1
2014 Shin U, Williams DE, Kozakov D, Hall DR, Beglov D, Vajda S, Andersen RJ, Pelletier J. Stimulators of translation identified during a small molecule screening campaign. Analytical Biochemistry. 447: 6-14. PMID 24513115 DOI: 10.1016/J.Ab.2013.10.026  1
2014 Lensink MF, Moal IH, Bates PA, Kastritis PL, Melquiond AS, Karaca E, Schmitz C, van Dijk M, Bonvin AM, Eisenstein M, Jiménez-García B, Grosdidier S, Solernou A, Pérez-Cano L, Pallara C, ... ... Vajda S, et al. Blind prediction of interfacial water positions in CAPRI. Proteins. 82: 620-32. PMID 24155158 DOI: 10.1002/Prot.24439  1
2014 Kozakov D, Li K, Hall DR, Beglov D, Zheng J, Vakili P, Schueler-Furman O, Paschalidis IC, Clore GM, Vajda S. Author response: Encounter complexes and dimensionality reduction in protein–protein association Elife. DOI: 10.7554/Elife.01370.021  1
2014 Vajda S, Szocs B. A Neural Network Based Distance Function for the k-Nearest Neighbor Classifier Proceedings of International Conference On Frontiers in Handwriting Recognition, Icfhr. 2014: 429-433. DOI: 10.1109/ICFHR.2014.78  1
2014 Heard CJ, Heiles S, Vajda S, Johnston RL. PdnAg(4-n) and PdnPt(4-n) clusters on MgO (100): A density functional surface genetic algorithm investigation Nanoscale. 6: 11777-11788. DOI: 10.1039/c4nr03363a  1
2014 Vajda S. Pružanje javne usluge prikupljanja komunalnog otpada Sigurnost. 56: 83-89.  1
2014 Vajda S. Design of catalysts at the subnanometer to nanometer scale: Tuning performance via size, composition, doping, support and assembly Nanoscale Science and Engineering Forum 2013 - Core Programming Area At the 2013 Aiche Annual Meeting: Global Challenges For Engineering a Sustainable Future. 450-451.  1
2013 Moghadasi M, Kozakov D, Vakili P, Vajda S, Paschalidis IC. A New Distributed Algorithm for Side-Chain Positioning in the Process of Protein Docking(*) Proceedings of the ... Ieee Conference On Decision & Control / Ieee Control Systems Society. Ieee Conference On Decision & Control. 739-744. PMID 24844567 DOI: 10.1109/CDC.2013.6759970  1
2013 Mirzaei H, Villar E, Mottarella S, Beglov D, Paschalidis IC, Vajda S, Kozakov D, Vakili P. Flexible Refinement of Protein-Ligand Docking on Manifolds. Proceedings of the ... Ieee Conference On Decision & Control / Ieee Control Systems Society. Ieee Conference On Decision & Control. 1392-1397. PMID 24830567 DOI: 10.1109/CDC.2013.6760077  1
2013 Kozakov D, Beglov D, Bohnuud T, Mottarella SE, Xia B, Hall DR, Vajda S. How good is automated protein docking? Proteins. 81: 2159-66. PMID 23996272 DOI: 10.1002/Prot.24403  1
2013 Moretti R, Fleishman SJ, Agius R, Torchala M, Bates PA, Kastritis PL, Rodrigues JP, Trellet M, Bonvin AM, Cui M, Rooman M, Gillis D, Dehouck Y, Moal I, Romero-Durana M, ... ... Vajda S, et al. Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions. Proteins. 81: 1980-7. PMID 23843247 DOI: 10.1002/Prot.24356  1
2013 Vajda S, Hall DR, Kozakov D. Sampling and scoring: a marriage made in heaven. Proteins. 81: 1874-84. PMID 23775627 DOI: 10.1002/Prot.24343  1
2013 Golden MS, Cote SM, Sayeg M, Zerbe BS, Villar EA, Beglov D, Sazinsky SL, Georgiadis RM, Vajda S, Kozakov D, Whitty A. Comprehensive experimental and computational analysis of binding energy hot spots at the NF-κB essential modulator/IKKβ protein-protein interface. Journal of the American Chemical Society. 135: 6242-56. PMID 23506214 DOI: 10.1021/Ja400914Z  1
2013 Grove LE, Hall DR, Beglov D, Vajda S, Kozakov D. FTFlex: accounting for binding site flexibility to improve fragment-based identification of druggable hot spots. Bioinformatics (Oxford, England). 29: 1218-9. PMID 23476022 DOI: 10.1093/Bioinformatics/Btt102  1
2013 Moghadasi M, Kozakov D, Vakili P, Vajda S, Paschalidis IC. A new distributed algorithm for side-chain repacking in protein-protein association F1000research. 4. DOI: 10.7490/F1000Research.1093112.1  1
2013 Borovikov E, Vajda S, Lingappa G, Antani S, Thoma G. Face matching for post-disaster family reunification Proceedings - 2013 Ieee International Conference On Healthcare Informatics, Ichi 2013. 131-140. DOI: 10.1109/ICHI.2013.23  1
2013 Cecotti H, Vajda S. Rejection schemes in multi-class classification - Application to handwritten character recognition Proceedings of the International Conference On Document Analysis and Recognition, Icdar. 445-449. DOI: 10.1109/ICDAR.2013.96  1
2013 Cecotti H, Vajda S. A radial neural convolutional layer for multi-oriented character recognition Proceedings of the International Conference On Document Analysis and Recognition, Icdar. 668-672. DOI: 10.1109/ICDAR.2013.137  1
2013 Vajda S. Legal obligations of waste producers and waste owners in republic of Croatia Sigurnost. 55: 219-236.  1
2012 Mirzaei H, Kozakov D, Beglov D, Paschalidis IC, Vajda S, Vakili P. A New Approach to Rigid Body Minimization with Application to Molecular Docking. Proceedings of the ... Ieee Conference On Decision & Control / Ieee Control Systems Society. Ieee Conference On Decision & Control. 2983-2988. PMID 24763338 DOI: 10.1109/CDC.2012.6426267  1
2012 Moghadasi M, Kozakov D, Mamonov AB, Vakili P, Vajda S, Paschalidis IC. A Message Passing Approach to Side Chain Positioning with Applications in Protein Docking Refinement. Proceedings of the ... Ieee Conference On Decision & Control / Ieee Control Systems Society. Ieee Conference On Decision & Control. 2310-2315. PMID 23515575 DOI: 10.1109/CDC.2012.6426600  1
2012 Mirzaei H, Beglov D, Paschalidis IC, Vajda S, Vakili P, Kozakov D. Rigid Body Energy Minimization on Manifolds for Molecular Docking. Journal of Chemical Theory and Computation. 8: 4374-4380. PMID 23382659 DOI: 10.1021/Ct300272J  1
2012 Brenke R, Hall DR, Chuang GY, Comeau SR, Bohnuud T, Beglov D, Schueler-Furman O, Vajda S, Kozakov D. Application of asymmetric statistical potentials to antibody-protein docking. Bioinformatics (Oxford, England). 28: 2608-14. PMID 23053206 DOI: 10.1093/Bioinformatics/Bts493  1
2012 Hingtgen S, Kasmieh R, Elbayly E, Nesterenko I, Figueiredo JL, Dash R, Sarkar D, Hall D, Kozakov D, Vajda S, Fisher PB, Shah K. A first-generation multi-functional cytokine for simultaneous optical tracking and tumor therapy. Plos One. 7: e40234. PMID 22808125 DOI: 10.1371/Journal.Pone.0040234  1
2012 Zerbe BS, Hall DR, Vajda S, Whitty A, Kozakov D. Relationship between hot spot residues and ligand binding hot spots in protein-protein interfaces. Journal of Chemical Information and Modeling. 52: 2236-44. PMID 22770357 DOI: 10.1021/Ci300175U  1
2012 Bohnuud T, Beglov D, Ngan CH, Zerbe B, Hall DR, Brenke R, Vajda S, Frank-Kamenetskii MD, Kozakov D. Computational mapping reveals dramatic effect of Hoogsteen breathing on duplex DNA reactivity with formaldehyde. Nucleic Acids Research. 40: 7644-52. PMID 22705795 DOI: 10.1093/Nar/Gks519  1
2012 Ngan CH, Bohnuud T, Mottarella SE, Beglov D, Villar EA, Hall DR, Kozakov D, Vajda S. FTMAP: extended protein mapping with user-selected probe molecules. Nucleic Acids Research. 40: W271-5. PMID 22589414 DOI: 10.1093/Nar/Gks441  1
2012 Hall DR, Kozakov D, Vajda S. Analysis of protein binding sites by computational solvent mapping. Methods in Molecular Biology (Clifton, N.J.). 819: 13-27. PMID 22183527 DOI: 10.1007/978-1-61779-465-0_2  1
2012 Hall DR, Ngan CH, Zerbe BS, Kozakov D, Vajda S. Hot spot analysis for driving the development of hits into leads in fragment-based drug discovery. Journal of Chemical Information and Modeling. 52: 199-209. PMID 22145575 DOI: 10.1021/Ci200468P  1
2012 Ngan CH, Hall DR, Zerbe B, Grove LE, Kozakov D, Vajda S. FTSite: high accuracy detection of ligand binding sites on unbound protein structures. Bioinformatics (Oxford, England). 28: 286-7. PMID 22113084 DOI: 10.1093/Bioinformatics/Btr651  1
2012 Beglov D, Hall DR, Brenke R, Shapovalov MV, Dunbrack RL, Kozakov D, Vajda S. Minimal ensembles of side chain conformers for modeling protein-protein interactions. Proteins. 80: 591-601. PMID 22105850 DOI: 10.1002/Prot.23222  1
2012 Szocs B, Vajda S, Robu J. D.A.C draw and calc - The intuitive calculator 2012 Ieee 10th Jubilee International Symposium On Intelligent Systems and Informatics, Sisy 2012. 157-163. DOI: 10.1109/SISY.2012.6339507  1
2012 Rothacker L, Vajda S, Fink GA. Bag-of-features representations for offline handwriting recognition applied to Arabic script Proceedings - International Workshop On Frontiers in Handwriting Recognition, Iwfhr. 149-154. DOI: 10.1109/ICFHR.2012.185  1
2012 Richarz J, Vajda S, Fink GA. Annotating handwritten characters with minimal human involvement in a semi-supervised learning strategy Proceedings - International Workshop On Frontiers in Handwriting Recognition, Iwfhr. 23-28. DOI: 10.1109/ICFHR.2012.181  1
2012 Richarz J, Vajda S, Fink GA. Towards semi-supervised transcription of handwritten historical weather reports Proceedings - 10th Iapr International Workshop On Document Analysis Systems, Das 2012. 180-184. DOI: 10.1109/DAS.2012.91  1
2012 Rangoni Y, Belaïd A, Vajda S. Labelling logical structures of document images using a dynamic perceptive neural network International Journal On Document Analysis and Recognition. 15: 45-55. DOI: 10.1007/s10032-011-0151-y  1
2012 Vajda S, Rothacker L, Fink GA. A method for camera-based interactive whiteboard reading Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7139: 112-125. DOI: 10.1007/978-3-642-29364-1_9  1
2011 Hall DH, Grove LE, Yueh C, Ngan CH, Kozakov D, Vajda S. Robust identification of binding hot spots using continuum electrostatics: application to hen egg-white lysozyme. Journal of the American Chemical Society. 133: 20668-71. PMID 22092261 DOI: 10.1021/Ja207914Y  1
2011 Buhrman G, O'Connor C, Zerbe B, Kearney BM, Napoleon R, Kovrigina EA, Vajda S, Kozakov D, Kovrigin EL, Mattos C. Analysis of binding site hot spots on the surface of Ras GTPase. Journal of Molecular Biology. 413: 773-89. PMID 21945529 DOI: 10.1016/J.Jmb.2011.09.011  1
2011 Kozakov D, Hall DR, Chuang GY, Cencic R, Brenke R, Grove LE, Beglov D, Pelletier J, Whitty A, Vajda S. Structural conservation of druggable hot spots in protein-protein interfaces. Proceedings of the National Academy of Sciences of the United States of America. 108: 13528-33. PMID 21808046 DOI: 10.1073/Pnas.1101835108  1
2011 Callard GV, Tarrant AM, Novillo A, Yacci P, Ciaccia L, Vajda S, Chuang GY, Kozakov D, Greytak SR, Sawyer S, Hoover C, Cotter KA. Evolutionary origins of the estrogen signaling system: insights from amphioxus. The Journal of Steroid Biochemistry and Molecular Biology. 127: 176-88. PMID 21514383 DOI: 10.1016/J.Jsbmb.2011.03.022  1
2011 Cencic R, Desforges M, Hall DR, Kozakov D, Du Y, Min J, Dingledine R, Fu H, Vajda S, Talbot PJ, Pelletier J. Blocking eIF4E-eIF4G interaction as a strategy to impair coronavirus replication. Journal of Virology. 85: 6381-9. PMID 21507972 DOI: 10.1128/Jvi.00078-11  1
2011 Yin F, Lee S, Abdela A, Vajda S, Palmer RE. Communication: Suppression of sintering of size-selected Pd clusters under realistic reaction conditions for catalysis. The Journal of Chemical Physics. 134: 141101. PMID 21495735 DOI: 10.1063/1.3575195  1
2011 Cencic R, Hall DR, Robert F, Du Y, Min J, Li L, Qui M, Lewis I, Kurtkaya S, Dingledine R, Fu H, Kozakov D, Vajda S, Pelletier J. Reversing chemoresistance by small molecule inhibition of the translation initiation complex eIF4F. Proceedings of the National Academy of Sciences of the United States of America. 108: 1046-51. PMID 21191102 DOI: 10.1073/Pnas.1011477108  1
2011 Junaidi A, Vajda S, Fink GA. Lampung - A new handwritten character benchmark: Database, labeling and recognition Acm International Conference Proceeding Series. DOI: 10.1145/2034617.2034632  1
2011 Vajda S, Junaidi A, Fink GA. A semi-supervised ensemble learning approach for character labeling with minimal human effort Proceedings of the International Conference On Document Analysis and Recognition, Icdar. 259-263. DOI: 10.1109/ICDAR.2011.60  1
2011 Lee S, Lee B, Seifert S, Vajda S, Winans RE. Simultaneous measurement of X-ray small angle scattering, absorption and reactivity: A continuous flow catalysis reactor Nuclear Instruments and Methods in Physics Research, Section a: Accelerators, Spectrometers, Detectors and Associated Equipment. 649: 200-203. DOI: 10.1016/j.nima.2010.12.172  1
2011 Qian G, Neurock M, Vajda S, Pfefferle LD, Haller GL. Particle size effects on the selective dehydrogenation of cyclohexane over Pt particles 11aiche - 2011 Aiche Annual Meeting, Conference Proceedings 1
2010 Kozakov D, Hall DR, Beglov D, Brenke R, Comeau SR, Shen Y, Li K, Zheng J, Vakili P, Paschalidis ICh, Vajda S. Achieving reliability and high accuracy in automated protein docking: ClusPro, PIPER, SDU, and stability analysis in CAPRI rounds 13-19. Proteins. 78: 3124-30. PMID 20818657 DOI: 10.1002/Prot.22835  1
2010 Chuang GY, Mehra-Chaudhary R, Ngan CH, Zerbe BS, Kozakov D, Vajda S, Beamer LJ. Domain motion and interdomain hot spots in a multidomain enzyme. Protein Science : a Publication of the Protein Society. 19: 1662-72. PMID 20589904 DOI: 10.1002/Pro.446  1
2010 Kozakov D, Chuang GY, Beglov D, Vajda S. Where does amantadine bind to the influenza virus M2 proton channel? Trends in Biochemical Sciences. 35: 471-5. PMID 20382026 DOI: 10.1016/J.Tibs.2010.03.006  1
2010 Vajda S, Fink GA. Exploring pattern selection strategies for fast neural network training Proceedings - International Conference On Pattern Recognition. 2913-2916. DOI: 10.1109/ICPR.2010.714  1
2010 Vajda S, Fink GA. Strategies for training robust neural network based digit recognizers on unbalanced data sets Proceedings - 12th International Conference On Frontiers in Handwriting Recognition, Icfhr 2010. 148-153. DOI: 10.1109/ICFHR.2010.30  1
2010 Kleine-Cosack C, Hennecke MH, Vajda S, Fink GA. Exploiting acoustic source localization for context classification in smart environments Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6439: 157-166. DOI: 10.1007/978-3-642-16917-5_16  1
2010 Meyer R, Lei Y, Lee S, Vajda S. Catalysis by supported size-selected clusters Model Systems in Catalysis: Single Crystals to Supported Enzyme Mimics. 345-365. DOI: 10.1007/978-0-387-98049-2_16  1
2009 Chuang GY, Kozakov D, Brenke R, Beglov D, Guarnieri F, Vajda S. Binding hot spots and amantadine orientation in the influenza a virus M2 proton channel. Biophysical Journal. 97: 2846-53. PMID 19917240 DOI: 10.1016/J.Bpj.2009.09.004  1
2009 Ngan CH, Beglov D, Rudnitskaya AN, Kozakov D, Waxman DJ, Vajda S. The structural basis of pregnane X receptor binding promiscuity. Biochemistry. 48: 11572-81. PMID 19856963 DOI: 10.1021/Bi901578N  1
2009 Beglov D, Lee CJ, De Biasio A, Kozakov D, Brenke R, Vajda S, Beglova N. Structural insights into recognition of beta2-glycoprotein I by the lipoprotein receptors. Proteins. 77: 940-9. PMID 19676115 DOI: 10.1002/Prot.22519  1
2009 Landon MR, Lieberman RL, Hoang QQ, Ju S, Caaveiro JM, Orwig SD, Kozakov D, Brenke R, Chuang GY, Beglov D, Vajda S, Petsko GA, Ringe D. Detection of ligand binding hot spots on protein surfaces via fragment-based methods: application to DJ-1 and glucocerebrosidase. Journal of Computer-Aided Molecular Design. 23: 491-500. PMID 19521672 DOI: 10.1007/S10822-009-9283-2  1
2009 Vajda S, Kozakov D. Convergence and combination of methods in protein-protein docking. Current Opinion in Structural Biology. 19: 164-70. PMID 19327983 DOI: 10.1016/J.Sbi.2009.02.008  1
2009 Schwede T, Sali A, Honig B, Levitt M, Berman HM, Jones D, Brenner SE, Burley SK, Das R, Dokholyan NV, Dunbrack RL, Fidelis K, Fiser A, Godzik A, Huang YJ, ... ... Vajda S, et al. Outcome of a workshop on applications of protein models in biomedical research. Structure (London, England : 1993). 17: 151-9. PMID 19217386 DOI: 10.1016/J.Str.2008.12.014  1
2009 Brenke R, Kozakov D, Chuang GY, Beglov D, Hall D, Landon MR, Mattos C, Vajda S. Fragment-based identification of druggable 'hot spots' of proteins using Fourier domain correlation techniques. Bioinformatics (Oxford, England). 25: 621-7. PMID 19176554 DOI: 10.1093/Bioinformatics/Btp036  1
2009 Vajda S, Plötz T, Fink GA. Layout analysis for camera-based whiteboard notes Journal of Universal Computer Science. 15: 3307-3324.  1
2008 Shen Y, Paschalidis ICh, Vakili P, Vajda S. Protein docking by the underestimation of free energy funnels in the space of encounter complexes. Plos Computational Biology. 4: e1000191. PMID 18846200 DOI: 10.1371/Journal.Pcbi.1000191  1
2008 Chuang GY, Kozakov D, Brenke R, Comeau SR, Vajda S. DARS (Decoys As the Reference State) potentials for protein-protein docking. Biophysical Journal. 95: 4217-27. PMID 18676649 DOI: 10.1529/Biophysj.108.135814  1
2008 Ritchie DW, Kozakov D, Vajda S. Accelerating and focusing protein-protein docking correlations using multi-dimensional rotational FFT generating functions. Bioinformatics (Oxford, England). 24: 1865-73. PMID 18591193 DOI: 10.1093/Bioinformatics/Btn334  1
2008 Kozakov D, Schueler-Furman O, Vajda S. Discrimination of near-native structures in protein-protein docking by testing the stability of local minima. Proteins. 72: 993-1004. PMID 18300245 DOI: 10.1002/Prot.21997  1
2008 Landon MR, Amaro RE, Baron R, Ngan CH, Ozonoff D, McCammon JA, Vajda S. Novel druggable hot spots in avian influenza neuraminidase H5N1 revealed by computational solvent mapping of a reduced and representative receptor ensemble. Chemical Biology & Drug Design. 71: 106-16. PMID 18205727 DOI: 10.1111/J.1747-0285.2007.00614.X  1
2008 Kaya T, Kozakov D, Vajda S. Clustering versus scoring for the identification of near-native poses in protein-ligand docking Proceedings of the 2008 International Conference On Bioinformatics and Computational Biology, Biocomp 2008. 1028-1032.  1
2007 Paschalidis IC, Shen Y, Vakili P, Vajda S. SDU: A Semidefinite Programming-Based Underestimation Method for Stochastic Global Optimization in Protein Docking. Ieee Transactions On Automatic Control. 52: 664-676. PMID 19759849 DOI: 10.1109/Tac.2007.894518  1
2007 Vajda S, Baczkó I, Leprán I. Selective cardiac plasma-membrane K(ATP) channel inhibition is defibrillatory and improves survival during acute myocardial ischemia and reperfusion. European Journal of Pharmacology. 577: 115-23. PMID 17904545 DOI: 10.1016/j.ejphar.2007.08.016  1
2007 Comeau SR, Kozakov D, Brenke R, Shen Y, Beglov D, Vajda S. ClusPro: performance in CAPRI rounds 6-11 and the new server. Proteins. 69: 781-5. PMID 17876812 DOI: 10.1002/Prot.21795  1
2007 Shen Y, Brenke R, Kozakov D, Comeau SR, Beglov D, Vajda S. Docking with PIPER and refinement with SDU in rounds 6-11 of CAPRI. Proteins. 69: 734-42. PMID 17853451 DOI: 10.1002/Prot.21754  1
2007 Silberstein M, Damborsky J, Vajda S. Exploring the binding sites of the haloalkane dehalogenase DhlA from Xanthobacter autotrophicus GJ10. Biochemistry. 46: 9239-49. PMID 17645312 DOI: 10.1021/Bi700336Y  1
2007 Landon MR, Lancia DR, Yu J, Thiel SC, Vajda S. Identification of hot spots within druggable binding regions by computational solvent mapping of proteins. Journal of Medicinal Chemistry. 50: 1231-40. PMID 17305325 DOI: 10.1021/Jm061134B  1
2007 Prasad JC, Goldstone JV, Camacho CJ, Vajda S, Stegeman JJ. Ensemble modeling of substrate binding to cytochromes P450: analysis of catalytic differences between CYP1A orthologs. Biochemistry. 46: 2640-54. PMID 17300179 DOI: 10.1021/Bi062320M  1
2007 Aslan FM, Yu Y, Vajda S, Mohr SC, Cantor CR. Engineering a novel, stable dimeric streptavidin with lower isoelectric point. Journal of Biotechnology. 128: 213-25. PMID 17000019 DOI: 10.1016/J.Jbiotec.2006.08.014  1
2006 Paschalidis ICh, Shen Y, Vakili P, Vajda S. Protein-protein docking with reduced potentials by exploiting multi-dimensional energy funnels. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 5330-3. PMID 17946298 DOI: 10.1109/IEMBS.2006.260790  1
2006 Silberstein M, Landon MR, Wang YE, Perl A, Vajda S. Computational methods for functional site identification suggest a substrate access channel in transaldolase. Genome Informatics. International Conference On Genome Informatics. 17: 13-22. PMID 17503352 DOI: 10.11234/Gi1990.17.13  1
2006 Leprán I, Pollesello P, Vajda S, Varró A, Papp JG. Preconditioning effects of levosimendan in a rabbit cardiac ischemia-reperfusion model. Journal of Cardiovascular Pharmacology. 48: 148-52. PMID 17086092 DOI: 10.1097/01.fjc.0000246151.39758.2a  1
2006 Kozakov D, Brenke R, Comeau SR, Vajda S. PIPER: an FFT-based protein docking program with pairwise potentials. Proteins. 65: 392-406. PMID 16933295 DOI: 10.1002/Prot.21117  1
2006 Kaya T, Mohr SC, Waxman DJ, Vajda S. Computational screening of phthalate monoesters for binding to PPARgamma. Chemical Research in Toxicology. 19: 999-1009. PMID 16918238 DOI: 10.1021/Tx050301S  1
2006 Clodfelter KH, Waxman DJ, Vajda S. Computational solvent mapping reveals the importance of local conformational changes for broad substrate specificity in mammalian cytochromes P450. Biochemistry. 45: 9393-407. PMID 16878974 DOI: 10.1021/Bi060343V  1
2006 Vajda S, Guarnieri F. Characterization of protein-ligand interaction sites using experimental and computational methods. Current Opinion in Drug Discovery & Development. 9: 354-62. PMID 16729732  1
2006 Landon MR, Lancia DR, Clodfelter KH, Vajda S. Clustering of domains of functionally related enzymes in the interaction database PRECISE by the generation of primary sequence patterns. Journal of Molecular Graphics & Modelling. 24: 426-33. PMID 16221553 DOI: 10.1016/J.Jmgm.2005.08.004  1
2006 Groves JL, Simonetti J, Vajda S, Ziegler W, Trombka JI. From inner Earth to outer space Oilfield Review. 18: 44-62.  1
2005 Comeau SR, Vajda S, Camacho CJ. Performance of the first protein docking server ClusPro in CAPRI rounds 3-5. Proteins. 60: 239-44. PMID 15981265 DOI: 10.1002/Prot.20564  1
2005 Vajda S. Classification of protein complexes based on docking difficulty. Proteins. 60: 176-80. PMID 15981248 DOI: 10.1002/Prot.20554  1
2005 Kozakov D, Clodfelter KH, Vajda S, Camacho CJ. Optimal clustering for detecting near-native conformations in protein docking. Biophysical Journal. 89: 867-75. PMID 15908573 DOI: 10.1529/Biophysj.104.058768  1
2005 Sheu SH, Kaya T, Waxman DJ, Vajda S. Exploring the binding site structure of the PPAR gamma ligand-binding domain by computational solvent mapping. Biochemistry. 44: 1193-209. PMID 15667213 DOI: 10.1021/Bi048032C  1
2005 Sheu SH, Lancia DR, Clodfelter KH, Landon MR, Vajda S. PRECISE: a Database of Predicted and Consensus Interaction Sites in Enzymes. Nucleic Acids Research. 33: D206-11. PMID 15608178 DOI: 10.1093/Nar/Gki091  1
2005 Roy K, Vajda S, Pal U, Chaudhuri BB, Belaid A. A system for indian postal automation Proceedings of the International Conference On Document Analysis and Recognition, Icdar. 2005: 1060-1064. DOI: 10.1109/ICDAR.2005.259  1
2005 Vajda S, Belaïd A. Structural information implant in a context based segmentation-free HMM handwritten word recognition system for latin and bangla script Proceedings of the International Conference On Document Analysis and Recognition, Icdar. 2005: 1126-1130. DOI: 10.1109/ICDAR.2005.222  1
2005 Cecotti H, Vajda S, Belaïd A. High performance classifiers combination for handwritten digit recognition Lecture Notes in Computer Science. 3686: 619-626.  1
2004 Rajamani D, Thiel S, Vajda S, Camacho CJ. Anchor residues in protein-protein interactions. Proceedings of the National Academy of Sciences of the United States of America. 101: 11287-92. PMID 15269345 DOI: 10.1073/Pnas.0401942101  1
2004 Comeau SR, Gatchell DW, Vajda S, Camacho CJ. ClusPro: a fully automated algorithm for protein-protein docking. Nucleic Acids Research. 32: W96-9. PMID 15215358 DOI: 10.1093/Nar/Gkh354  1
2004 Prasad JC, Vajda S, Camacho CJ. Consensus alignment server for reliable comparative modeling with distant templates. Nucleic Acids Research. 32: W50-4. PMID 15215349 DOI: 10.1093/Nar/Gkh456  1
2004 Grossman CE, Niland B, Stancato C, Verhoeven NM, Van Der Knaap MS, Jakobs C, Brown LM, Vajda S, Banki K, Perl A. Deletion of Ser-171 causes inactivation, proteasome-mediated degradation and complete deficiency of human transaldolase. The Biochemical Journal. 382: 725-31. PMID 15115436 DOI: 10.1042/Bj20040413  1
2004 Vajda S, Camacho CJ. Protein-protein docking: is the glass half-full or half-empty? Trends in Biotechnology. 22: 110-6. PMID 15036860 DOI: 10.1016/J.Tibtech.2004.01.006  1
2004 Comeau SR, Gatchell DW, Vajda S, Camacho CJ. ClusPro: an automated docking and discrimination method for the prediction of protein complexes. Bioinformatics (Oxford, England). 20: 45-50. PMID 14693807 DOI: 10.1093/Bioinformatics/Btg371  1
2004 Bhattacharya U, Vajda S, Mallick A, Chaudhuri BB, Belaid A. On the choice of training set, architecture and combination rule of multiple MLP classifiers for multiresolution recognition of handwritten characters Proceedings - International Workshop On Frontiers in Handwriting Recognition, Iwfhr. 419-424. DOI: 10.1109/IWFHR.2004.77  1
2004 Lupulescu C, Vajda S, Lindinger A, Merli A, Wöste L. Femtosecond investigations on the ultrafast photo-dissociation dynamics of CpMn(CO)3 and its fragment ions Physical Chemistry Chemical Physics. 6: 3420-3425. DOI: 10.1039/b402246g  1
2004 Bartelt A, Lindinger A, Lupulescu C, Vajda S, Wöste L. Optimal control of multi-photon dissociation and ionization processes in small NamKn clusters Physical Chemistry Chemical Physics. 6: 1679-1686. DOI: 10.1039/b317107h  1
2003 Murphy J, Gatchell DW, Prasad JC, Vajda S. Combination of scoring functions improves discrimination in protein-protein docking. Proteins. 53: 840-54. PMID 14635126 DOI: 10.1002/Prot.10473  1
2003 Silberstein M, Dennis S, Brown L, Kortvelyesi T, Clodfelter K, Vajda S. Identification of substrate binding sites in enzymes by computational solvent mapping. Journal of Molecular Biology. 332: 1095-113. PMID 14499612 DOI: 10.1016/J.Jmb.2003.08.019  1
2003 Kortvelyesi T, Silberstein M, Dennis S, Vajda S. Improved mapping of protein binding sites. Journal of Computer-Aided Molecular Design. 17: 173-86. PMID 13677484 DOI: 10.1023/A:1025369923311  1
2003 Prasad JC, Comeau SR, Vajda S, Camacho CJ. Consensus alignment for reliable framework prediction in homology modeling. Bioinformatics (Oxford, England). 19: 1682-91. PMID 12967965 DOI: 10.1093/Bioinformatics/Btg211  1
2003 Janin J, Henrick K, Moult J, Eyck LT, Sternberg MJ, Vajda S, Vakser I, Wodak SJ. CAPRI: a Critical Assessment of PRedicted Interactions. Proteins. 52: 2-9. PMID 12784359 DOI: 10.1002/Prot.10381  1
2003 Kortvelyesi T, Dennis S, Silberstein M, Brown L, Vajda S. Algorithms for computational solvent mapping of proteins. Proteins. 51: 340-51. PMID 12696046 DOI: 10.1002/Prot.10287  1
2003 Lupulescu C, Vajda S, Lindinger A, Merli A, Wöste L. Femtosecond pump-probe experiments on non-stoichiometric sodium-fluoride clusters I. First direct observation of periodical structural changes in Na 2F European Physical Journal D. 24: 173-176. DOI: 10.1140/epjd/e2003-00154-1  1
2003 Bartelt A, Lindinger A, Lupulescu C, Vajda S, Wöste L. One parameter fs-pulse form control on NaK and Na2K Physical Chemistry Chemical Physics. 5: 3610-3615. DOI: 10.1039/b304567f  1
2003 Lindinger A, Lupulescu C, Bartelt A, Vajda S, Wöste L. Coherent control of alkali cluster fragmentation dynamics Spectrochimica Acta - Part B Atomic Spectroscopy. 58: 1109-1124. DOI: 10.1016/S0584-8547(03)00067-3  1
2003 Beuthan J, Minet O, Vajda S, Müller G. Comparative investigations of the phase shift distribution by interferometric phase microscopy and Fs-laser-pulses analysis on biological cells Laser Physics. 13: 765-768.  1
2003 Prasad JC, Silberstein M, Camacho CJ, Vajda S. Homology modeling of proteins using multiple models and consensus sequence alignment Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2812: 389-401.  1
2003 Vajda S, Lupulescu C, Lindinger A, Merli A, Wöste L. Control of photoinduced processes by optimally shaped laser pulses in MnCp(CO)3: Recovering the information content coded in the optimal pulse form Springer Series in Chemical Physics. 71: 79-81.  1
2003 Lindinger A, Bartelt A, Lupulescu C, Vajda S, Wöste L. Optimal control on multi-photon ionization dynamics of small alkali aggregates Proceedings of Spie - the International Society For Optical Engineering. 5258: 25-39.  1
2002 Vajda S, Vakser IA, Sternberg MJ, Janin J. Modeling of protein interactions in genomes. Proteins. 47: 444-6. PMID 12001222 DOI: 10.1002/Prot.10112  1
2002 Dennis S, Vajda S. Semiglobal simplex optimization and its application to determining the preferred solvation sites of proteins. Journal of Computational Chemistry. 23: 319-34. PMID 11908495 DOI: 10.1002/Jcc.10026  1
2002 Dennis S, Kortvelyesi T, Vajda S. Computational mapping identifies the binding sites of organic solvents on proteins. Proceedings of the National Academy of Sciences of the United States of America. 99: 4290-5. PMID 11904374 DOI: 10.1073/Pnas.062398499  1
2002 Camacho CJ, Vajda S. Protein-protein association kinetics and protein docking. Current Opinion in Structural Biology. 12: 36-40. PMID 11839487 DOI: 10.1016/S0959-440X(02)00286-5  1
2002 Valkó PP, Vajda S. Inversion of noise-free Laplace transforms: Towards a standardized set of test problems Inverse Problems in Engineering. 10: 467-483. DOI: 10.1080/10682760290004294  1
2001 Reznik GO, Vajda S, Cantor CR, Sano T. A streptavidin mutant useful for directed immobilization on solid surfaces. Bioconjugate Chemistry. 12: 1000-4. PMID 11716692 DOI: 10.1021/Bc015507T  1
2001 Camacho CJ, Vajda S. Protein docking along smooth association pathways. Proceedings of the National Academy of Sciences of the United States of America. 98: 10636-41. PMID 11517309 DOI: 10.1073/Pnas.181147798  1
2001 Kimura SR, Brower RC, Vajda S, Camacho CJ. Dynamical view of the positions of key side chains in protein-protein recognition Biophysical Journal. 80: 635-642. PMID 11159432 DOI: 10.1016/S0006-3495(01)76044-4  1
2001 Bartelt A, Minemoto S, Lupulescu C, Vajda S, Wöste L. Control of wavepacket dynamics in mixed alkali metal clusters by optimally shaped fs pulses European Physical Journal D. 8: 127-131.  1
2000 Gatchell DW, Dennis S, Vajda S. Discrimination of near-native protein structures from misfolded models by empirical free energy functions. Proteins. 41: 518-34. PMID 11056039 DOI: 10.1002/1097-0134(20001201)41:4<518::Aid-Prot90>3.0.Co;2-6  1
2000 Camacho CJ, Gatchell DW, Kimura SR, Vajda S. Scoring docked conformations generated by rigid-body protein-protein docking. Proteins. 40: 525-37. PMID 10861944 DOI: 10.1002/1097-0134(20000815)40:3<525::Aid-Prot190>3.0.Co;2-F  1
2000 Camacho CJ, Kimura SR, DeLisi C, Vajda S. Kinetics of desolvation-mediated protein-protein binding. Biophysical Journal. 78: 1094-105. PMID 10692300 DOI: 10.1016/S0006-3495(00)76668-9  1
2000 Dennis S, Camacho CJ, Vajda S. Continuum electrostatic analysis of preferred solvation sites around proteins in solution. Proteins. 38: 176-88. PMID 10656264 DOI: 10.1002/(Sici)1097-0134(20000201)38:2<176::Aid-Prot6>3.0.Co;2-O  1
2000 Rosendo-Francisco P, Lupulescu C, Baptist B, Vajda S. Ultrafast fragmentation and vibrational dynamics of triatomic hetero- and homonuclear alkali metal clusters Journal of the Chinese Chemical Society. 47: 705-708.  1
1999 Camacho CJ, Weng Z, Vajda S, DeLisi C. Free energy landscapes of encounter complexes in protein-protein association. Biophysical Journal. 76: 1166-78. PMID 10049302 DOI: 10.1016/S0006-3495(99)77281-4  1
1999 Delisi C, Vajda S. Computational problems in cell biology Computing in Science and Engineering. 1: 26-31.  1
1999 Vajda S, Leisner T, Wolf S, Wöste LH. Reactions of size-selected metal cluster ions Philosophical Magazine B: Physics of Condensed Matter; Statistical Mechanics, Electronic, Optical and Magnetic Properties. 79: 1353-1366.  1
1999 Leisner T, Vajda S, Wolf S, Wöste L, Berry RS. The relaxation from linear to triangular Ag3 probed by femtosecond resonant two-photon ionization Journal of Chemical Physics. 111: 1017-1021.  1
1998 Janardhan A, Vajda S. Selecting near-native conformations in homology modeling: The role of molecular mechanics and solvation terms Protein Science. 7: 1772-1780. PMID 10082374 DOI: 10.1002/Pro.5560070812  1
1998 Reznik GO, Vajda S, Sano T, Cantor CR. A streptavidin mutant with altered ligand-binding specificity. Proceedings of the National Academy of Sciences of the United States of America. 95: 13525-30. PMID 9811833 DOI: 10.1073/Pnas.95.23.13525  1
1998 Sano T, Vajda S, Cantor CR. Genetic engineering of streptavidin, a versatile affinity tag. Journal of Chromatography. B, Biomedical Sciences and Applications. 715: 85-91. PMID 9792500 DOI: 10.1016/S0378-4347(98)00316-8  1
1998 Luidens MK, Figge J, Breese K, Vajda S. Predicted and trifluoroethanol‐induced α‐helicity of polypeptides Biopolymers. 39: 367-376. PMID 8756516 DOI: 10.1002/(Sici)1097-0282(199609)39:3<367::Aid-Bip8>3.0.Co;2-M  1
1998 Zhang C, Kimura SR, Weng Z, Vajda S, Brower RC, Delisi C. The waters of life Journal of the Franklin Institute. 335: 213-240. DOI: 10.1016/S0016-0032(97)00020-3  1
1997 Zhu Q, Vajda S, Smith TF. Beta-turn new classification and its some features in proteins Chinese Medical Sciences Journal = Chung-Kuo I Hsueh K"O Hsueh Tsa Chih / Chinese Academy of Medical Sciences. 12: 84-91. PMID 11324505  1
1997 Weng Z, Delisi C, Vajda S. Empirical free energy calculation: Comparison to calorimetric data Protein Science. 6: 1976-1984. PMID 9300497 DOI: 10.1002/Pro.5560060918  1
1997 Sano T, Vajda S, Smith CL, Cantor CR. Engineering subunit association of multisubunit proteins: a dimeric streptavidin. Proceedings of the National Academy of Sciences of the United States of America. 94: 6153-8. PMID 9177186 DOI: 10.1073/Pnas.94.12.6153  1
1997 Vajda S, Sippl M, Novotny J. Empirical potentials and functions for protein folding and binding Current Opinion in Structural Biology. 7: 222-228. PMID 9094333 DOI: 10.1016/S0959-440X(97)80029-2  1
1997 Reznik GO, Vajda S, Smith CL, Cantor CR, Sano T. Two-chain tetrameric streptavidins Protein Engineering. 10: 34.  1
1996 Reznik GO, Vajda S, Smith CL, Cantor CR, Sano T. Streptavidins with intersubunit crosslinks have enhanced stability Nature Biotechnology. 14: 1007-1011. PMID 9631041 DOI: 10.1038/Nbt0896-1007  1
1996 Sano T, Vajda S, Reznik GO, Smith CL, Cantor CR. Molecular engineering of streptavidin Annals of the New York Academy of Sciences. 799: 383-390. PMID 8958100 DOI: 10.1111/J.1749-6632.1996.Tb33229.X  1
1996 Weng Z, Vajda S, Delisi C. Prediction of protein complexes using empirical free energy functions Protein Science. 5: 614-626. PMID 8845751 DOI: 10.1002/Pro.5560050406  1
1996 Sezerman U, Vajda S, Delisi C. Free energy mapping of class I MHC molecules and structural determination of bound peptides Protein Science. 5: 1272-1281. PMID 8819160 DOI: 10.1002/Pro.5560050706  1
1996 King BL, Vajda S, DeLisi C. Empirical free energy as a target function in docking and design: Application to HIV-1 protease inhibitors Febs Letters. 384: 87-91. PMID 8797810 DOI: 10.1016/0014-5793(96)00276-1  1
1996 Luidens MK, Figge J, Breese K, Vajda S. Predicted and trifluoroethanol-induced α-helicity of polypeptides Biopolymers. 39: 367-376. PMID 8756516 DOI: 10.1002/(SICI)1097-0282(199609)39:3<367::AID-BIP8>3.0.CO;2-M  1
1996 Gulukota K, Vajda S, Delisi C. Peptide docking using dynamic programming Journal of Computational Chemistry. 17: 418-428. DOI: 10.1002/(Sici)1096-987X(199603)17:4<418::Aid-Jcc4>3.0.Co;2-X  1
1995 Vajda S, Weng Z, Delisi C. Extracting hydrophobicity parameters from solute partition and protein mutation/unfolding experiments Protein Engineering, Design and Selection. 8: 1081-1092. PMID 8819974 DOI: 10.1093/Protein/8.11.1081  1
1995 Rosenfeld R, Vajda S, DeLisi C. Flexible docking and design Annual Review of Biophysics and Biomolecular Structure. 24: 677-700. PMID 7663131 DOI: 10.1146/Annurev.Bb.24.060195.003333  1
1995 Rosenfeld R, Zheng Q, Vajda S, DeLisi C. Flexible docking of peptides to class I major-histocompatibility-complex receptors Genetic Analysis: Biomolecular Engineering. 12: 1-21. PMID 7648466 DOI: 10.1016/1050-3862(95)00107-7  1
1994 Chapman MJ, Godfrey KR, Vajda S. Indistinguishability for a class of nonlinear compartmental models Mathematical Biosciences. 119: 77-95. PMID 8111137 DOI: 10.1016/0025-5564(94)90005-1  1
1994 Vajda S, Weng Z, Rosenfeld R, DeLisi C. Effect of conformational flexibility and solvation on receptor - Ligand binding free energies Biochemistry. 33: 13977-13988. PMID 7947806 DOI: 10.1021/Bi00251A004  1
1994 Godfrey KR, Chapman MJ, Vajda S. Identifiability and indistinguishability of nonlinear pharmacokinetic models Journal of Pharmacokinetics and Biopharmaceutics. 22: 229-251. PMID 7884651 DOI: 10.1007/Bf02353330  1
1994 Vajda S, Rabitz H. Identifiability And Distinguishability Of General Reaction Systems The Journal of Physical Chemistry. 98: 5265-5271. DOI: 10.1021/J100071A016  1
1994 Buturovic LJ, Smith TF, Vajda S. Finite-state and reduced-parameter representations of protein backbone conformations Journal of Computational Chemistry. 15: 300-312. DOI: 10.1002/Jcc.540150305  1
1994 Vajda S, Rabitz H. Identifiability and distinguishability of general reaction systems Journal of Physical Chemistry. 98: 5265-5271.  1
1993 Rao S, Zhu QL, Vajda S, Smith T. The local information content of the protein structural database Febs Letters. 322: 143-146. PMID 8482381 DOI: 10.1016/0014-5793(93)81555-E  1
1993 Vajda S, Jafri MS, Sezerman OU, DeLisi C. Necessary conditions for avoiding incorrect polypeptide folds in conformational search by energy minimization. Biopolymers. 33: 173-92. PMID 8427934 DOI: 10.1002/Bip.360330117  1
1993 Vajda S. Conformational filtering in polypeptides and proteins Journal of Molecular Biology. 229: 125-145. PMID 8421296 DOI: 10.1006/Jmbi.1993.1013  1
1993 Zheng Q, Rosenfeld R, Vajda S, DeLisi C. Determining protein loop conformation using scaling-relaxation techniques Protein Science. 2: 1242-1248. PMID 8401209 DOI: 10.1002/Pro.5560020806  1
1993 Figge J, Breese K, Vajda S, Zhu QL, Eisele L, Andersen TT, MacColl R, Friedrich T, Smith TF. The binding domain structure of retinoblastoma-binding proteins Protein Science. 2: 155-164. PMID 8382993 DOI: 10.1002/Pro.5560020204  1
1993 Rosenfeld R, Zheng Q, Vajda S, DeLisi C. Computing the structure of bound peptides. Application to antigen recognition by class I major histocompatibility complex receptors Journal of Molecular Biology. 234: 515-521. PMID 8254656 DOI: 10.1006/Jmbi.1993.1607  1
1993 Sezerman U, Vajda S, Cornette J, DeLisi C. Toward computational determination of peptide-receptor structure Protein Science. 2: 1827-1843. PMID 7505681 DOI: 10.1002/Pro.5560021105  1
1993 Vajda S, Rabitz H. Generalized parametric sensitivity: Application to a CSTR Chemical Engineering Science. 48: 2453-2461. DOI: 10.1016/0009-2509(93)81066-5  1
1993 Zheng Q, Rosenfeld R, Vajda S, DeLisi C. Loop closure via bond scaling and relaxation Journal of Computational Chemistry. 14: 556-565. DOI: 10.1002/Jcc.540140508  1
1992 Jafri MS, Vajda S, Pasik P, Gillo B. A membrane model for cytosolic calcium oscillations. A study using Xenopus oocytes. Biophysical Journal. 63: 235-46. PMID 1420870 DOI: 10.1016/S0006-3495(92)81583-7  1
1992 Ledermann W, Vajda S. On a problem in population structure Linear Algebra and Its Applications. 166: 97-113. DOI: 10.1016/0024-3795(92)90271-B  1
1992 Vajda S, Rabitz H. Parametric sensitivity and self-similarity in thermal explosion theory Chemical Engineering Science. 47: 1063-1078. DOI: 10.1016/0009-2509(92)80232-2  1
1991 Eisenfeld J, Vajda S, Sugar I, DeLisi C. Constrained optimization and protein structure determination American Journal of Physiology - Cell Physiology. 261. PMID 1872378 DOI: 10.1152/Ajpcell.1991.261.2.C376  1
1990 Vajda S, Delisi C. Determining minimum energy conformations of polypeptides by dynamic programming Biopolymers. 29: 1755-1772. PMID 2207285 DOI: 10.1002/Bip.360291408  1
1990 Chappell MJ, Godfrey KR, Vajda S. Global identifiability of the parameters of nonlinear systems with specified inputs: A comparison of methods Mathematical Biosciences. 102: 41-73. PMID 2134490 DOI: 10.1016/0025-5564(90)90055-4  1
1990 Vajda S, Kataoka R, DeLisi C, Margalit H, Berzofsky JA, Cornette JL. Molecular structure and vaccine design Annual Review of Biophysics and Biophysical Chemistry. 19: 69-82. PMID 1694668 DOI: 10.1146/  1
1990 Vajda S. EURO gold medal ceremony. The three ages of operational research European Journal of Operational Research. 45: 131-134. DOI: 10.1016/0377-2217(90)90179-F  1
1990 Vajda S, Rabitz H, Yetter RA. Effects of thermal coupling and diffusion on the mechanism of H2 oxidation in steady premixed laminar flames Combustion and Flame. 82: 270-297. DOI: 10.1016/0010-2180(90)90003-A  1
1990 Vajda S, Godfrey KR, Valko P. Reply to "comments on two recent deconvolution methods." I Journal of Pharmacokinetics and Biopharmaceutics. 18: 489-491. DOI: 10.1007/Bf01061707  1
1989 Anzenbacher P, Hudeček J, Vajda S, Fidler V. Nanosecond fluorometry of the single tryptophan in cytochrome P-450e (P450IIB2) Biochemical and Biophysical Research Communications. 162: 921-925. PMID 2764945 DOI: 10.1016/0006-291X(89)90760-2  1
1989 Vajda S, Distefano JJ, Godfrey KR, Fagarasan J. Parameter space boundaries for unidentifiable compartmental models Mathematical Biosciences. 97: 27-60. PMID 2520205 DOI: 10.1016/0025-5564(89)90042-4  1
1989 Vajda S, Godfrey KR, Rabitz H. Similarity transformation approach to identifiability analysis of nonlinear compartmental models Mathematical Biosciences. 93: 217-248. PMID 2520030 DOI: 10.1016/0025-5564(89)90024-2  1
1989 Vajda S, Rabitz H. State Isomorphism Approach to Global Identifiability of Nonlinear Systems Ieee Transactions On Automatic Control. 34: 220-223. DOI: 10.1109/9.21105  1
1989 Vajda S, Rabitz H, Walter E, Lecourtier Y. Qualitative and Quantitative Identifiability Analysis of Nonlinear Chemical Kinetic Models Chemical Engineering Communications. 83: 191-219. DOI: 10.1080/00986448908940662  1
1988 Vajda S, Godfrey KR, Valko P. Numerical deconvolution using system identification methods Journal of Pharmacokinetics and Biopharmaceutics. 16: 85-107. PMID 3373420 DOI: 10.1007/Bf01061863  1
1988 Vajda S, Rabitz H. Identifiability and distinguishability of first-order reaction systems The Journal of Physical Chemistry. 92: 701-707. DOI: 10.1021/J100314A024  1
1988 Bánvölgyi G, Valkó P, Vajda S, Fülöp N. Estimation of influential parameters in a steady-state evaporator model: The principal component approach Computers and Chemical Engineering. 12: 117-122. DOI: 10.1016/0098-1354(88)85013-0  1
1988 Vajda S, Rabitz H. Identifiability and distinguishability of first-order reaction systems Journal of Physical Chemistry. 92: 701-707.  1
1987 Vajda S. Deterministic Identifiability and Algebraic Invariants for Polynomial Systems Ieee Transactions On Automatic Control. 32: 182-184. DOI: 10.1109/Tac.1987.1104546  1
1987 Valkó P, Vajda S. An extended Marquardt-type procedure for fitting error-in-variables models Computers and Chemical Engineering. 11: 37-43. DOI: 10.1016/0098-1354(87)80004-2  1
1987 Vajda S, Valkó P, Godfrey KR. Direct and indirect least squares methods in continuous-time parameter estimation Automatica. 23: 707-718. DOI: 10.1016/0005-1098(87)90027-6  1
1986 Vajda S, Turányi T. Principal component analysis for reducing the Edelson-Field-Noyes model of the Belousov-Zhabotinsky reaction Journal of Physical Chemistry. 90: 1664-1670. DOI: 10.1021/J100399A042  1
1986 Vajda S, Valkó P, Yermakova A. A direct-indirect procedure for estimation of kinetic parameters Computers and Chemical Engineering. 10: 49-58. DOI: 10.1016/0098-1354(86)85045-1  1
1985 Vajda S. The use of linear programming in manpower planning Trabajos De Estadistica Y De Investigacion Operativa. 36: 301-311. DOI: 10.1007/BF02888565  1
1985 Vajda S. STRUCTURAL IDENTIFIABILITY AND THE REALIZATION PROBLEM Prace Naukowe Instytutu Cybernetyki Technicznej, Politechniki Wroclawskiej. 227-254.  1
1985 Vajda S, Valko P, Yermakova A. MULTISTAGE PARAMETER ESTIMATION PROCEDURE FOR CONTINUOUS SYSTEMS Ifac Proceedings Series. 1579-1584.  1
1985 Deutsch T, Vajda S, Tamas G. FEASIBILITY OF OPEN-LOOP BLOOD GLUCOSE CONTROL Ifac Proceedings Series. 3085-3090.  1
1984 Rafailovich MH, Kistner OC, Sunyar AW, Vajda S, Sprouse GD. G factors of high spin states in Er154,155 and Yb157 and the nature of the neutron 132+ quasiparticle in transitional nuclei Physical Review C. 30: 169-174. DOI: 10.1103/Physrevc.30.169  1
1984 Valko P, Vajda S. An extended ode solver for sensitivity calculations Computers and Chemistry. 8: 255-271. DOI: 10.1016/0097-8485(84)85017-2  1
1984 Vajda S. Analysis of unique structural identifiability via submodels Mathematical Biosciences. 71: 125-146. DOI: 10.1016/0025-5564(84)90023-3  1
1984 Vajda S. Structural equivalence and exhaustive compartmental modeling Mathematical Biosciences. 69: 57-75. DOI: 10.1016/0025-5564(84)90014-2  1
1984 Lönnroth T, Vajda S, Kistner OC, Rafailovich MH. The g-factors of isomeric states in127, 128Xe Zeitschrift FüR Physik a Atoms and Nuclei. 317: 215-223. DOI: 10.1007/BF01421257  1
1983 Vajda S. Structural identifiability of dynamical systems International Journal of Systems Science. 14: 1229-1247. DOI: 10.1080/00207728308926526  1
1982 Vajda S, Várkonyi P. A computer program for the analysis of structural identifiability and equivalence of linear compartmental models Computer Programs in Biomedicine. 15: 27-44. PMID 7128122 DOI: 10.1016/0010-468X(82)90054-X  1
1982 Vajda S. Further Comments on “On Parameter and Structural Identifiability: Nonunique Observability/Reconstructibility for Identifiable Systems, Other Ambiguities, and New Definitions” Ieee Transactions On Automatic Control. 27: 1136-1137. DOI: 10.1109/Tac.1982.1103062  1
1982 Yermakova A, Vajda S, Valko P. Direct integral method via splne-approximation for estimating rate constants Applied Catalysis. 2: 139-154. DOI: 10.1016/0166-9834(82)80197-8  1
1981 Vajda S, Sprouse GD, Rafailovich MH, Noé JW. Quadrupole moment of Fem57 Physical Review Letters. 47: 1230. DOI: 10.1103/Physrevlett.47.1230  1
1981 Vajda S. Structural equivalence of linear systems and compartmental models Mathematical Biosciences. 55: 39-64. DOI: 10.1016/0025-5564(81)90012-2  1
1980 Vajda S. Identifiability classes in reaction kinetics Reaction Kinetics and Catalysis Letters. 13: 191-196. DOI: 10.1007/BF02068565  1
1979 Vajda S. Comments on “Structural Identifiability in Linear Time-Invariant Systems” Ieee Transactions On Automatic Control. 24: 495-496. DOI: 10.1109/Tac.1979.1102029  1
1979 Vajda S, Olti F. A practical approach to dynamic simulation of two-phase systems Computers and Chemical Engineering. 3: 513. DOI: 10.1016/0098-1354(79)80085-X  1
1979 Vajda S. Identifiability of first order reaction systems Reaction Kinetics and Catalysis Letters. 11: 39-43. DOI: 10.1007/BF02098331  1
1979 Vajda S, Olti F. PRACTICAL APPROACH TO DYNAMIC SIMULATION OF TWO-PHASE SYSTEMS Journal of Microwave Power. 2: 984-993.  1
1977 Vajda S, Ivanov EA, Iordachescu A, Plostinaru D. TEMPERATURE DEPENDENCE OF THE NUCLEAR ALIGNMENT OF **1**2**0Sb AND **1**1**5Te IN TIN METAL Rev Roum Phys. 22.  1
1975 Vajda S. MATHEMATICAL ASPECTS OF MANPOWER PLANNING Operational Research Quarterly. 26: 527-542.  1
1974 Vajda S. Tests of optimality in constrained optimization Ima Journal of Applied Mathematics (Institute of Mathematics and Its Applications). 13: 187-200. DOI: 10.1093/imamat/13.2.187  1
1972 Vajda S, Iordǎchescu A, Ivanov EA, Pascovici G. Investigation of a short-lived isomeric state in 115Te Physics Letters B. 42: 54-56. DOI: 10.1016/0370-2693(72)90714-9  1
1967 Vajda S. Markov chains and the determination of fair premiums Astin Bulletin. 4: 265-268. DOI: 10.1017/S0515036100009053  1
1964 Vajda S. Smokeless stacks—industry’s big problem Journal of the Air Pollution Control Association. 14: 415-417. PMID 14220203 DOI: 10.1080/00022470.1964.10468306  1
1962 Vajda S. Minimum Variance Reinsurance Astin Bulletin. 2: 257-260. DOI: 10.1017/S0515036100009995  1
1961 GHERMAN E, ANDREESCU P, VOINA I, VAJDA S. Dislocation of the knee joint Zentralblatt FüR Chirurgie. 86: 664-669. PMID 13704909  1
1961 Vajda S. Seminar für Unternehmensforschung vom 25.-31. August 1960 in Freiburg BläTter Der Dgfvm. 5: 257. DOI: 10.1007/BF02810185  1
1955 Vajda S. Analytical studies in stop-loss reinsurance. II Scandinavian Actuarial Journal. 1955: 180-191. DOI: 10.1080/03461238.1955.10432181  1
1954 Vajda S. A problem of encounters Trabajos De Estadistica. 5: 217-228. DOI: 10.1007/BF03028543  1
1953 Vajda S. Theorems Relating to Quadratic Forms and their Discriminant Matrices Proceedings of the Edinburgh Mathematical Society. 10: 13-15. DOI: 10.1017/S0013091500014188  1
1950 Vajda S. Der Beruf des Versicherungsmathematikers BläTter Der Dgvfm. 1: 7-12. DOI: 10.1007/BF02908112  1
1948 Vajda S. A note on the use of weighted orthogonal functions in statistical analysis Mathematical Proceedings of the Cambridge Philosophical Society. 44: 588-590. DOI: 10.1017/S0305004100024592  1
1947 Vajda S. Technique of the analysis of variance [16] Nature. 160: 27. PMID 20250935  1
1947 VAJDA S. The stratified semi-stationary population Biometrika. 34: 243-254. PMID 18918692  1
1947 Vajda S. Statistical methods Nature. 160: 724.  1
1945 Vajda S. Calculation of policy-values for different rates of interest Scandinavian Actuarial Journal. 1945: 258-271. DOI: 10.1080/03461238.1945.10404914  1
1939 Vajda S. Die Wahrscheinlichkeit einer bestimmten Auszahlungssumme Scandinavian Actuarial Journal. 1939: 10-21. DOI: 10.1080/03461238.1939.10419247  1
1936 Vajda S. Über Wahrscheinlichkeiten geordneter Ereignisse Monatshefte FüR Mathematik Und Physik. 44: 186-202. DOI: 10.1007/BF01699315  1
1933 Vajda S. Der derzeitige stand der bausparmathematik Scandinavian Actuarial Journal. 1933: 22-50. DOI: 10.1080/03461238.1933.10419207  1
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