Ryan S. Senger, Ph.D. - Publications

Affiliations: 
2005 Colorado State University, Fort Collins, CO 
Area:
Chemical Engineering, Biostatistics Biology

22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Senger RS, Robertson JL. The Rametrix PRO Toolbox v1.0 for MATLAB. Peerj. 8: e8179. PMID 31934499 DOI: 10.7717/Peerj.8179  0.308
2019 Kavuru V, Vu T, Karageorge L, Choudhury D, Senger R, Robertson J. Dipstick analysis of urine chemistry: benefits and limitations of dry chemistry-based assays. Postgraduate Medicine. PMID 31609156 DOI: 10.1080/00325481.2019.1679540  0.302
2019 Packard H, Taylor ZW, Williams SL, Guimarães PI, Toth J, Jensen RV, Senger RS, Kuhn DD, Stevens AM. Identification of soil bacteria capable of utilizing a corn ethanol fermentation byproduct. Plos One. 14: e0212685. PMID 30849084 DOI: 10.1371/Journal.Pone.0212685  0.35
2016 Freedman BG, Zu TN, Wallace RS, Senger RS. Raman spectroscopy detects phenotypic differences among E. coli enriched for 1-butanol tolerance using a metagenomic DNA library. Biotechnology Journal. PMID 26814030 DOI: 10.1002/Biot.201500144  0.389
2015 Zu TNK, Athamneh AIM, Collakova E, Robertson J, Hawken T, Aardema C, Senger RS. Assessment of ex vivo perfused liver health by Raman spectroscopy Journal of Raman Spectroscopy. 46: 551-558. DOI: 10.1002/Jrs.4688  0.312
2014 Fisher AK, Freedman BG, Bevan DR, Senger RS. A review of metabolic and enzymatic engineering strategies for designing and optimizing performance of microbial cell factories. Computational and Structural Biotechnology Journal. 11: 91-9. PMID 25379147 DOI: 10.1016/J.Csbj.2014.08.010  0.361
2014 Apte AA, Senger RS, Fong SS. Designing novel cellulase systems through agent-based modeling and global sensitivity analysis. Bioengineered. 5: 243-53. PMID 24830736 DOI: 10.4161/Bioe.29160  0.308
2014 Senger RS, Yen JY, Fong SS. A review of genome-scale metabolic flux modeling of anaerobiosis in biotechnology Current Opinion in Chemical Engineering. 6: 33-42. DOI: 10.1016/J.Coche.2014.08.003  0.336
2013 Athamneh AI, Alajlouni RA, Wallace RS, Seleem MN, Senger RS. Phenotypic profiling of antibiotic response signatures in Escherichia coli using Raman spectroscopy. Antimicrobial Agents and Chemotherapy. 58: 1302-14. PMID 24295982 DOI: 10.1128/Aac.02098-13  0.311
2013 Yen JY, Nazem-Bokaee H, Freedman BG, Athamneh AI, Senger RS. Deriving metabolic engineering strategies from genome-scale modeling with flux ratio constraints. Biotechnology Journal. 8: 581-94. PMID 23460591 DOI: 10.1002/Biot.201200234  0.344
2013 Senger RS, Nazem-Bokaee H. Resolving cell composition through simple measurements, genome-scale modeling, and a genetic algorithm. Methods in Molecular Biology (Clifton, N.J.). 985: 85-101. PMID 23417800 DOI: 10.1007/978-1-62703-299-5_5  0.328
2012 Collakova E, Yen JY, Senger RS. Are we ready for genome-scale modeling in plants? Plant Science : An International Journal of Experimental Plant Biology. 191: 53-70. PMID 22682565 DOI: 10.1016/J.Plantsci.2012.04.010  0.332
2012 McAnulty MJ, Yen JY, Freedman BG, Senger RS. Genome-scale modeling using flux ratio constraints to enable metabolic engineering of clostridial metabolism in silico. Bmc Systems Biology. 6: 42. PMID 22583864 DOI: 10.1186/1752-0509-6-42  0.325
2011 Milne CB, Eddy JA, Raju R, Ardekani S, Kim PJ, Senger RS, Jin YS, Blaschek HP, Price ND. Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052. Bmc Systems Biology. 5: 130. PMID 21846360 DOI: 10.1186/1752-0509-5-130  0.38
2010 Senger RS. Biofuel production improvement with genome-scale models: The role of cell composition. Biotechnology Journal. 5: 671-85. PMID 20540108 DOI: 10.1002/Biot.201000007  0.357
2009 Wang M, Senger RS, Paredes C, Banik GG, Lin A, Papoutsakis ET. Microarray-based gene expression analysis as a process characterization tool to establish comparability of complex biological products: scale-up of a whole-cell immunotherapy product. Biotechnology and Bioengineering. 104: 796-808. PMID 19591186 DOI: 10.1002/Bit.22441  0.612
2008 Senger RS, Papoutsakis ET. Genome-scale model for Clostridium acetobutylicum: Part I. Metabolic network resolution and analysis. Biotechnology and Bioengineering. 101: 1036-52. PMID 18767192 DOI: 10.1002/Bit.22010  0.522
2008 Senger RS, Papoutsakis ET. Genome-scale model for Clostridium acetobutylicum: Part II. Development of specific proton flux states and numerically determined sub-systems. Biotechnology and Bioengineering. 101: 1053-71. PMID 18767191 DOI: 10.1002/Bit.22009  0.514
2008 Jones SW, Paredes CJ, Tracy B, Cheng N, Sillers R, Senger RS, Papoutsakis ET. The transcriptional program underlying the physiology of clostridial sporulation. Genome Biology. 9: R114. PMID 18631379 DOI: 10.1186/Gb-2008-9-7-R114  0.541
2008 Senger RS, Papoutsakis ET. The dynamic biomass constituting equation for the genome-scale model of the biofuels producer clostridium acetobutylicum Aiche Annual Meeting, Conference Proceedings 0.429
2007 Paredes CJ, Senger RS, Spath IS, Borden JR, Sillers R, Papoutsakis ET. A general framework for designing and validating oligomer-based DNA microarrays and its application to Clostridium acetobutylicum. Applied and Environmental Microbiology. 73: 4631-8. PMID 17526797 DOI: 10.1128/Aem.00144-07  0.563
2006 Senger RS, Phisalaphong M, Karim MN, Linden JC. Development of a culture sub-population induction model: signaling pathways synergy and taxanes production by Taxus canadensis. Biotechnology Progress. 22: 1671-82. PMID 17137317 DOI: 10.1021/Bp0602552  0.325
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