Chuming Chen, Ph.D. - Publications

Affiliations: 
2008 Computer Science & Engineering University of South Carolina, Columbia, SC 
Area:
Computer Science

16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Shamsaei B, Chojnacki S, Pilarczyk M, Najafabadi M, Niu W, Chen C, Ross K, Matlock A, Muhlich J, Chutipongtanate S, Zheng J, Turner J, Vidović D, Jaffe J, MacCoss M, et al. piNET: a versatile web platform for downstream analysis and visualization of proteomics data. Nucleic Acids Research. PMID 32469073 DOI: 10.1093/Nar/Gkaa436  0.315
2020 MacDougall A, Volynkin V, Saidi R, Poggioli D, Zellner H, Hatton-Ellis E, Joshi V, O'Donovan C, Orchard S, Auchincloss AH, Baratin D, Bolleman J, Coudert E, de Castro E, Hulo C, ... ... Chen C, et al. UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase. Bioinformatics (Oxford, England). PMID 32399560 DOI: 10.1093/Bioinformatics/Btaa485  0.333
2020 Gavali S, Cowart J, Chen C, Ross KE, Arighi C, Wu CH. RESTful API for iPTMnet: a resource for protein post-translational modification network discovery. Database : the Journal of Biological Databases and Curation. 2020. PMID 32395768 DOI: 10.1093/Database/Baz157  0.329
2018 Huang LC, Ross KE, Baffi TR, Drabkin H, Kochut KJ, Ruan Z, D'Eustachio P, McSkimming D, Arighi C, Chen C, Natale DA, Smith C, Gaudet P, Newton AC, Wu C, et al. Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources. Scientific Reports. 8: 6518. PMID 29695735 DOI: 10.1038/S41598-018-24457-1  0.302
2017 Chen C, Huang H, Wu CH. Protein Bioinformatics Databases and Resources. Methods in Molecular Biology (Clifton, N.J.). 1558: 3-39. PMID 28150231 DOI: 10.1007/978-1-4939-6783-4_1  0.345
2016 Natale DA, Arighi CN, Blake JA, Bona J, Chen C, Chen SC, Christie KR, Cowart J, D'Eustachio P, Diehl AD, Drabkin HJ, Duncan WD, Huang H, Ren J, Ross K, et al. Protein Ontology (PRO): enhancing and scaling up the representation of protein entities. Nucleic Acids Research. PMID 27899649 DOI: 10.1093/Nar/Gkw1075  0.339
2016 Chen C, Huang H, Mazumder R, Natale DA, McGarvey PB, Zhang J, Polson SW, Wang Y, Wu CH. Computational clustering for viral reference proteomes. Bioinformatics (Oxford, England). PMID 27153712 DOI: 10.1093/Bioinformatics/Btw110  0.32
2015 Crowgey EL, Stabley DL, Chen C, Huang H, Robbins KM, Polson SW, Sol-Church K, Wu CH. An integrated approach for analyzing clinical genomic variant data from next-generation sequencing. Journal of Biomolecular Techniques : Jbt. 26: 19-28. PMID 25649353 DOI: 10.7171/Jbt.15-2601-002  0.327
2014 Wyffels J, King BL, Vincent J, Chen C, Wu CH, Polson SW. SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes. F1000research. 3: 191. PMID 25309735 DOI: 10.12688/F1000Research.4996.1  0.31
2013 Chen C, Li Z, Huang H, Suzek BE, Wu CH. A fast Peptide Match service for UniProt Knowledgebase. Bioinformatics (Oxford, England). 29: 2808-9. PMID 23958731 DOI: 10.1093/Bioinformatics/Btt484  0.313
2012 Wang Q, Arighi CN, King BL, Polson SW, Vincent J, Chen C, Huang H, Kingham BF, Page ST, Rendino MF, Thomas WK, Udwary DW, Wu CH. Community annotation and bioinformatics workforce development in concert--Little Skate Genome Annotation Workshops and Jamborees. Database : the Journal of Biological Databases and Curation. 2012: bar064. PMID 22434832 DOI: 10.1093/Database/Bar064  0.306
2011 Chen C, Natale DA, Finn RD, Huang H, Zhang J, Wu CH, Mazumder R. Representative proteomes: a stable, scalable and unbiased proteome set for sequence analysis and functional annotation. Plos One. 6: e18910. PMID 21556138 DOI: 10.1371/Journal.Pone.0018910  0.351
2010 Chen C, McGarvey PB, Huang H, Wu CH. Protein Bioinformatics Infrastructure for the Integration and Analysis of Multiple High-Throughput "omics" Data. Advances in Bioinformatics. 423589. PMID 20369061 DOI: 10.1155/2010/423589  0.343
2007 Huang C, Matthews M, Ginley M, Zheng X, Chen C, Chang JM. Efficient and Secure Multicast in WirelessMAN: A Cross-layer Design Journal of Communications Software and Systems. 3: 199-206. DOI: 10.24138/Jcomss.V3I3.254  0.549
2005 McKillen DJ, Chen YA, Chen C, Jenny MJ, Trent HF, Robalino J, McLean DC, Gross PS, Chapman RW, Warr GW, Almeida JS. Marine genomics: a clearing-house for genomic and transcriptomic data of marine organisms. Bmc Genomics. 6: 34. PMID 15760464 DOI: 10.1186/1471-2164-6-34  0.301
2005 Stanislaus R, Chen C, Franklin J, Arthur J, Almeida JS. AGML Central: web based gel proteomic infrastructure. Bioinformatics (Oxford, England). 21: 1754-7. PMID 15647304 DOI: 10.1093/Bioinformatics/Bti246  0.326
Show low-probability matches.