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James O. Lloyd-Smith - Publications

Affiliations: 
2008- Ecology & Evolutionary Biology University of California, Los Angeles, Los Angeles, CA 
Area:
Infectious disease dynamics, Population ecology
Website:
https://www.eeb.ucla.edu/indivfaculty.php?FacultyKey=10440
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66 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Whittier CA, Nutter FB, Johnson PLF, Cross P, Lloyd-Smith JO, Slenning BD, Stoskopf MK. Population structure, intergroup interaction, and human contact govern infectious disease impacts in mountain gorilla populations. American Journal of Primatology. e23350. PMID 34878678 DOI: 10.1002/ajp.23350  0.594
2020 Prager KC, Buhnerkempe MG, Greig DJ, Orr AJ, Jensen ED, Gomez F, Galloway RL, Wu Q, Gulland FMD, Lloyd-Smith JO. Linking longitudinal and cross-sectional biomarker data to understand host-pathogen dynamics: Leptospira in California sea lions (Zalophus californianus) as a case study. Plos Neglected Tropical Diseases. 14: e0008407. PMID 32598393 DOI: 10.1371/Journal.Pntd.0008407  0.412
2019 Pepin KM, Hopken MW, Shriner SA, Spackman E, Abdo Z, Parrish C, Riley S, Lloyd-Smith JO, Piaggio AJ. Improving risk assessment of the emergence of novel influenza A viruses by incorporating environmental surveillance. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374: 20180346. PMID 31401963 DOI: 10.1098/Rstb.2018.0346  0.365
2019 Gostic KM, Wunder EA, Bisht V, Hamond C, Julian TR, Ko AI, Lloyd-Smith JO. Mechanistic dose-response modelling of animal challenge data shows that intact skin is a crucial barrier to leptospiral infection. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374: 20190367. PMID 31401957 DOI: 10.1098/Rstb.2019.0367  0.312
2019 Wasik BR, de Wit E, Munster V, Lloyd-Smith JO, Martinez-Sobrido L, Parrish CR. Onward transmission of viruses: how do viruses emerge to cause epidemics after spillover? Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374: 20190017. PMID 31401954 DOI: 10.1098/Rstb.2019.0017  0.402
2019 Borremans B, Faust C, Manlove KR, Sokolow SH, Lloyd-Smith JO. Cross-species pathogen spillover across ecosystem boundaries: mechanisms and theory. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374: 20180344. PMID 31401953 DOI: 10.1098/Rstb.2018.0344  0.354
2018 Nelson MI, Lloyd-Smith JO, Simonsen L, Rambaut A, Holmes EC, Chowell G, Miller MA, Spiro DJ, Grenfell B, Viboud C. Fogarty International Center collaborative networks in infectious disease modeling: Lessons learnt in research and capacity building. Epidemics. PMID 30446431 DOI: 10.1016/J.Epidem.2018.10.004  0.368
2017 Hoff NA, Morier DS, Kisalu NK, Johnston SC, Doshi RH, Hensley LE, Okitolonda-Wemakoy E, Muyembe-Tamfum JJ, Lloyd-Smith JO, Rimoin AW. Varicella Coinfection in Patients with Active Monkeypox in the Democratic Republic of the Congo. Ecohealth. PMID 28894977 DOI: 10.1007/S10393-017-1266-5  0.315
2017 Lloyd-Smith JO. Infectious diseases: Predictions of virus spillover across species. Nature. PMID 28636591 DOI: 10.1038/Nature23088  0.316
2017 Plowright RK, Parrish CR, McCallum H, Hudson PJ, Ko AI, Graham AL, Lloyd-Smith JO. Pathways to zoonotic spillover. Nature Reviews. Microbiology. PMID 28555073 DOI: 10.1038/Nrmicro.2017.45  0.352
2017 Pepin KM, Kay SL, Golas BD, Shriner SS, Gilbert AT, Miller RS, Graham AL, Riley S, Cross PC, Samuel MD, Hooten MB, Hoeting JA, Lloyd-Smith JO, Webb CT, Buhnerkempe MG. Inferring infection hazard in wildlife populations by linking data across individual and population scales. Ecology Letters. PMID 28090753 DOI: 10.1111/Ele.12732  0.586
2016 Schakner ZA, Buhnerkempe MG, Tennis MJ, Stansell RJ, van der Leeuw BK, Lloyd-Smith JO, Blumstein DT. Epidemiological models to control the spread of information in marine mammals. Proceedings. Biological Sciences. 283. PMID 27974523 DOI: 10.1098/Rspb.2016.2037  0.342
2016 Gostic KM, Ambrose M, Worobey M, Lloyd-Smith JO. Potent protection against H5N1 and H7N9 influenza via childhood hemagglutinin imprinting. Science (New York, N.Y.). 354: 722-726. PMID 27846599 DOI: 10.1126/Science.Aag1322  0.305
2016 Graham AL, Nussey DH, Lloyd-Smith JO, Longbottom D, Maley M, Pemberton JM, Pilkington JG, Prager KC, Smith L, Watt KA, Wilson K, McNEILLY TN, Brülisauer F. Exposure to viral and bacterial pathogens among Soay sheep (Ovis aries) of the St Kilda archipelago. Epidemiology and Infection. 1-10. PMID 26829883 DOI: 10.1017/S0950268816000017  0.345
2015 Buhnerkempe MG, Gostic K, Park M, Ahsan P, Belser JA, Lloyd-Smith JO. Mapping influenza transmission in the ferret model to transmission in humans. Elife. 4. PMID 26329460 DOI: 10.7554/Elife.07969  0.304
2015 Biek R, Pybus OG, Lloyd-Smith JO, Didelot X. Measurably evolving pathogens in the genomic era. Trends in Ecology & Evolution. 30: 306-313. PMID 25887947 DOI: 10.1016/J.Tree.2015.03.009  0.333
2015 Gog JR, Pellis L, Wood JL, McLean AR, Arinaminpathy N, Lloyd-Smith JO. Seven challenges in modeling pathogen dynamics within-host and across scales. Epidemics. 10: 45-8. PMID 25843382 DOI: 10.1016/J.Epidem.2014.09.009  0.387
2015 Metcalf CJ, Birger RB, Funk S, Kouyos RD, Lloyd-Smith JO, Jansen VA. Five challenges in evolution and infectious diseases. Epidemics. 10: 40-4. PMID 25843381 DOI: 10.1016/J.Epidem.2014.12.003  0.36
2015 Lloyd-Smith JO, Funk S, McLean AR, Riley S, Wood JL. Nine challenges in modelling the emergence of novel pathogens. Epidemics. 10: 35-9. PMID 25843380 DOI: 10.1016/J.Epidem.2014.09.002  0.36
2015 Buhnerkempe MG, Roberts MG, Dobson AP, Heesterbeek H, Hudson PJ, Lloyd-Smith JO. Eight challenges in modelling disease ecology in multi-host, multi-agent systems. Epidemics. 10: 26-30. PMID 25843378 DOI: 10.1016/J.Epidem.2014.10.001  0.312
2015 Heesterbeek H, Anderson RM, Andreasen V, Bansal S, De Angelis D, Dye C, Eames KT, Edmunds WJ, Frost SD, Funk S, Hollingsworth TD, House T, Isham V, Klepac P, Lessler J, ... Lloyd-Smith JO, et al. Modeling infectious disease dynamics in the complex landscape of global health. Science (New York, N.Y.). 347: aaa4339. PMID 25766240 DOI: 10.1126/Science.Aaa4339  0.375
2015 Gostic KM, Kucharski AJ, Lloyd-Smith JO. Effectiveness of traveller screening for emerging pathogens is shaped by epidemiology and natural history of infection. Elife. 4. PMID 25695520 DOI: 10.7554/Elife.05564  0.311
2014 Blumberg S, Enanoria WT, Lloyd-Smith JO, Lietman TM, Porco TC. Identifying postelimination trends for the introduction and transmissibility of measles in the United States. American Journal of Epidemiology. 179: 1375-82. PMID 24786800 DOI: 10.1093/Aje/Kwu068  0.343
2014 Viana M, Mancy R, Biek R, Cleaveland S, Cross PC, Lloyd-Smith JO, Haydon DT. Assembling evidence for identifying reservoirs of infection. Trends in Ecology & Evolution. 29: 270-9. PMID 24726345 DOI: 10.1016/J.Tree.2014.03.002  0.562
2013 Pepin KM, Lloyd-Smith JO, Webb CT, Holcomb K, Zhu H, Guan Y, Riley S. Minimizing the threat of pandemic emergence from avian influenza in poultry systems. Bmc Infectious Diseases. 13: 592. PMID 24341669 DOI: 10.1186/1471-2334-13-592  0.323
2013 Blumberg S, Lloyd-Smith JO. Comparing methods for estimating R0 from the size distribution of subcritical transmission chains. Epidemics. 5: 131-45. PMID 24021520 DOI: 10.1016/J.Epidem.2013.05.002  0.333
2013 Thomassen HA, Fuller T, Asefi-Najafabady S, Shiplacoff JA, Mulembakani PM, Blumberg S, Johnston SC, Kisalu NK, Kinkela TL, Fair JN, Wolfe ND, Shongo RL, LeBreton M, Meyer H, Wright LL, ... ... Lloyd-Smith JO, et al. Pathogen-host associations and predicted range shifts of human monkeypox in response to climate change in central Africa. Plos One. 8: e66071. PMID 23935820 DOI: 10.1371/Journal.Pone.0066071  0.316
2013 Lloyd-Smith JO. Vacated niches, competitive release and the community ecology of pathogen eradication. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20120150. PMID 23798698 DOI: 10.1098/Rstb.2012.0150  0.361
2013 Blumberg S, Lloyd-Smith JO. Inference of R(0) and transmission heterogeneity from the size distribution of stuttering chains. Plos Computational Biology. 9: e1002993. PMID 23658504 DOI: 10.1371/Journal.Pcbi.1002993  0.367
2013 Strelioff CC, Vijaykrishna D, Riley S, Guan Y, Peiris JS, Lloyd-Smith JO. Inferring patterns of influenza transmission in swine from multiple streams of surveillance data. Proceedings. Biological Sciences / the Royal Society. 280: 20130872. PMID 23658205 DOI: 10.1098/Rspb.2013.0872  0.335
2013 Ke R, Aaskov J, Holmes EC, Lloyd-Smith JO. Phylodynamic analysis of the emergence and epidemiological impact of transmissible defective dengue viruses. Plos Pathogens. 9: e1003193. PMID 23468631 DOI: 10.1371/Journal.Ppat.1003193  0.346
2013 Prager KC, Greig DJ, Alt DP, Galloway RL, Hornsby RL, Palmer LJ, Soper J, Wu Q, Zuerner RL, Gulland FM, Lloyd-Smith JO. Asymptomatic and chronic carriage of Leptospira interrogans serovar Pomona in California sea lions (Zalophus californianus). Veterinary Microbiology. 164: 177-83. PMID 23419822 DOI: 10.1016/J.Vetmic.2013.01.032  0.329
2013 Bulterys PL, Le T, Quang VM, Nelson KE, Lloyd-Smith JO. Environmental predictors and incubation period of AIDS-associated penicillium marneffei infection in Ho Chi Minh City, Vietnam. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 56: 1273-9. PMID 23386634 DOI: 10.1093/Cid/Cit058  0.323
2013 Park M, Loverdo C, Schreiber SJ, Lloyd-Smith JO. Multiple scales of selection influence the evolutionary emergence of novel pathogens. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20120333. PMID 23382433 DOI: 10.1098/Rstb.2012.0333  0.34
2012 Karesh WB, Dobson A, Lloyd-Smith JO, Lubroth J, Dixon MA, Bennett M, Aldrich S, Harrington T, Formenty P, Loh EH, Machalaba CC, Thomas MJ, Heymann DL. Ecology of zoonoses: natural and unnatural histories. Lancet. 380: 1936-45. PMID 23200502 DOI: 10.1016/S0140-6736(12)61678-X  0.388
2012 Ke R, Lloyd-Smith JO. Evolutionary analysis of human immunodeficiency virus type 1 therapies based on conditionally replicating vectors. Plos Computational Biology. 8: e1002744. PMID 23133349 DOI: 10.1371/Journal.Pcbi.1002744  0.324
2012 Loverdo C, Park M, Schreiber SJ, Lloyd-Smith JO. Influence of viral replication mechanisms on within-host evolutionary dynamics. Evolution; International Journal of Organic Evolution. 66: 3462-71. PMID 23106710 DOI: 10.1111/J.1558-5646.2012.01687.X  0.302
2011 Metzger VT, Lloyd-Smith JO, Weinberger LS. Autonomous targeting of infectious superspreaders using engineered transmissible therapies. Plos Computational Biology. 7: e1002015. PMID 21483468 DOI: 10.1371/Journal.Pcbi.1002015  0.393
2011 Raffel TR, Lloyd-Smith JO, Sessions SK, Hudson PJ, Rohr JR. Does the early frog catch the worm? Disentangling potential drivers of a parasite age-intensity relationship in tadpoles. Oecologia. 165: 1031-42. PMID 20852894 DOI: 10.1007/S00442-010-1776-0  0.329
2010 Pepin KM, Lass S, Pulliam JR, Read AF, Lloyd-Smith JO. Identifying genetic markers of adaptation for surveillance of viral host jumps. Nature Reviews. Microbiology. 8: 802-13. PMID 20938453 DOI: 10.1038/Nrmicro2440  0.332
2010 Lloyd-Smith JO. Modeling density dependence in heterogeneous landscapes: dispersal as a case study. Journal of Theoretical Biology. 265: 160-6. PMID 20346364 DOI: 10.1016/J.Jtbi.2010.03.032  0.323
2010 Volkov I, Pepin KM, Lloyd-Smith JO, Banavar JR, Grenfell BT. Synthesizing within-host and population-level selective pressures on viral populations: the impact of adaptive immunity on viral immune escape. Journal of the Royal Society, Interface / the Royal Society. 7: 1311-8. PMID 20335194 DOI: 10.1098/Rsif.2009.0560  0.323
2010 Sánchez MS, Lloyd-Smith JO, Getz WM. Monitoring linked epidemics: the case of tuberculosis and HIV. Plos One. 5: e8796. PMID 20098716 DOI: 10.1371/Journal.Pone.0008796  0.538
2009 Sánchez MS, Lloyd-Smith JO, Williams BG, Porco TC, Ryan SJ, Borgdorff MW, Mansoer J, Dye C, Getz WM. Incongruent HIV and tuberculosis co-dynamics in Kenya: interacting epidemics monitor each other. Epidemics. 1: 14-20. PMID 21352748 DOI: 10.1016/J.Epidem.2008.08.001  0.649
2009 Hahn JA, Wylie D, Dill J, Sanchez MS, Lloyd-Smith JO, Page-Shafer K, Getz WM. Potential impact of vaccination on the hepatitis C virus epidemic in injection drug users. Epidemics. 1: 47-57. PMID 20445816 DOI: 10.1016/J.Epidem.2008.10.002  0.487
2009 Lloyd-Smith JO, George D, Pepin KM, Pitzer VE, Pulliam JR, Dobson AP, Hudson PJ, Grenfell BT. Epidemic dynamics at the human-animal interface. Science (New York, N.Y.). 326: 1362-7. PMID 19965751 DOI: 10.1126/Science.1177345  0.381
2009 Polansky L, de Valpine P, Lloyd-Smith JO, Getz WM. Likelihood ridges and multimodality in population growth rate models. Ecology. 90: 2313-20. PMID 19739392 DOI: 10.1890/08-1461.1  0.738
2008 Sánchez MS, Lloyd-Smith JO, Porco TC, Williams BG, Borgdorff MW, Mansoer J, Salomon JA, Getz WM. Impact of HIV on novel therapies for tuberculosis control. Aids (London, England). 22: 963-72. PMID 18453856 DOI: 10.1097/Qad.0B013E3282F7Cb4B  0.515
2008 Lloyd-Smith JO, Poss M, Grenfell BT. HIV-1/parasite co-infection and the emergence of new parasite strains. Parasitology. 135: 795-806. PMID 18371236 DOI: 10.1017/S0031182008000292  0.362
2008 Polansky L, de Valpine P, Lloyd-Smith JO, Getz WM. Parameter estimation in a generalized discrete-time model of density dependence Theoretical Ecology. 1: 221-229. DOI: 10.1007/S12080-008-0022-4  0.742
2007 Lloyd-Smith JO, Greig DJ, Hietala S, Ghneim GS, Palmer L, St Leger J, Grenfell BT, Gulland FM. Cyclical changes in seroprevalence of leptospirosis in California sea lions: endemic and epidemic disease in one host species? Bmc Infectious Diseases. 7: 125. PMID 17986335 DOI: 10.1186/1471-2334-7-125  0.396
2007 Graham AL, Cattadori IM, Lloyd-Smith JO, Ferrari MJ, Bjørnstad ON. Transmission consequences of coinfection: cytokines writ large? Trends in Parasitology. 23: 284-91. PMID 17466597 DOI: 10.1016/J.Pt.2007.04.005  0.328
2007 Cross PC, Johnson PL, Lloyd-Smith JO, Getz WM. Utility of R0 as a predictor of disease invasion in structured populations. Journal of the Royal Society, Interface / the Royal Society. 4: 315-24. PMID 17251146 DOI: 10.1098/Rsif.2006.0185  0.723
2006 Salomon JA, Lloyd-Smith JO, Getz WM, Resch S, Sánchez MS, Porco TC, Borgdorff MW. Prospects for advancing tuberculosis control efforts through novel therapies. Plos Medicine. 3: e273. PMID 16866578 DOI: 10.1371/Journal.Pmed.0030273  0.51
2006 Williams BG, Lloyd-Smith JO, Gouws E, Hankins C, Getz WM, Hargrove J, de Zoysa I, Dye C, Auvert B. The potential impact of male circumcision on HIV in Sub-Saharan Africa. Plos Medicine. 3: e262. PMID 16822094 DOI: 10.1371/Journal.Pmed.0030262  0.51
2006 Bar-David S, Lloyd-Smith JO, Getz WM. Dynamics and management of infectious disease in colonizing populations. Ecology. 87: 1215-24. PMID 16761600 DOI: 10.1890/0012-9658(2006)87[1215:Damoid]2.0.Co;2  0.594
2006 Getz WM, Lloyd-Smith JO. Comment on "On the regulation of populations of mammals, birds, fish, and insects" I. Science (New York, N.Y.). 311: 1100; author reply 1. PMID 16497915 DOI: 10.1126/Science.1121388  0.546
2005 Lloyd-Smith JO, Cross PC, Briggs CJ, Daugherty M, Getz WM, Latto J, Sanchez MS, Smith AB, Swei A. Should we expect population thresholds for wildlife disease? Trends in Ecology & Evolution. 20: 511-9. PMID 16701428 DOI: 10.1016/J.Tree.2005.07.004  0.681
2005 Lloyd-Smith JO, Schreiber SJ, Kopp PE, Getz WM. Superspreading and the effect of individual variation on disease emergence. Nature. 438: 355-9. PMID 16292310 DOI: 10.1038/Nature04153  0.606
2005 Bauch CT, Lloyd-Smith JO, Coffee MP, Galvani AP. Dynamically modeling SARS and other newly emerging respiratory illnesses: past, present, and future. Epidemiology (Cambridge, Mass.). 16: 791-801. PMID 16222170 DOI: 10.1097/01.Ede.0000181633.80269.4C  0.375
2005 Porco TC, Lloyd-Smith JO, Gross KL, Galvani AP. The effect of treatment on pathogen virulence. Journal of Theoretical Biology. 233: 91-102. PMID 15615623 DOI: 10.1016/J.Jtbi.2004.09.009  0.322
2005 Cross PC, Lloyd-Smith JO, Johnson PLF, Getz WM. Duelling timescales of host movement and disease recovery determine invasion of disease in structured populations Ecology Letters. 8: 587-595. DOI: 10.1111/J.1461-0248.2005.00760.X  0.666
2005 Cross PC, Lloyd-Smith JO, Getz WM. Disentangling association patterns in fission-fusion societies using African buffalo as an example Animal Behaviour. 69: 499-506. DOI: 10.1016/J.Anbehav.2004.08.006  0.647
2004 Lloyd-Smith JO, Getz WM, Westerhoff HV. Frequency-dependent incidence in models of sexually transmitted diseases: portrayal of pair-based transmission and effects of illness on contact behaviour. Proceedings. Biological Sciences / the Royal Society. 271: 625-34. PMID 15156921 DOI: 10.1098/Rspb.2003.2632  0.569
2004 Cross PC, Lloyd-Smith JO, Bowers JA, Hay CT, Hofmeyr M, Getz WM. Integrating association data and disease dynamics in a social ungulate: Bovine tuberculosis in African buffalo in the Kruger National Park Annales Zoologici Fennici. 41: 879-892.  0.617
2003 Lloyd-Smith JO, Galvani AP, Getz WM. Curtailing transmission of severe acute respiratory syndrome within a community and its hospital. Proceedings. Biological Sciences / the Royal Society. 270: 1979-89. PMID 14561285 DOI: 10.1098/Rspb.2003.2481  0.503
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