Carlos A. Castaneda, Ph.D. - Publications

2009 Johns Hopkins University, Baltimore, MD 
General Biophysics, Biochemistry

27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Castañeda CA, Dixon EK, Walker O, Chaturvedi A, Nakasone MA, Curtis JE, Reed MR, Krueger S, Cropp TA, Fushman D. Linkage via K27 Bestows Ubiquitin Chains with Unique Properties among Polyubiquitins. Structure (London, England : 1993). PMID 26876099 DOI: 10.1016/J.Str.2016.01.007  0.56
2015 Ha JH, Karchin JM, Walker-Kopp N, Castañeda CA, Loh SN. Engineered Domain Swapping as an On/Off Switch for Protein Function. Chemistry & Biology. 22: 1384-93. PMID 26496687 DOI: 10.1016/J.Chembiol.2015.09.007  0.56
2015 Castañeda CA, Chaturvedi A, Camara CM, Curtis JE, Krueger S, Fushman D. Linkage-specific conformational ensembles of non-canonical polyubiquitin chains. Physical Chemistry Chemical Physics : Pccp. PMID 26422168 DOI: 10.1039/C5Cp04601G  0.56
2015 Burke MC, Wang Y, Lee AE, Dixon EK, Castaneda CA, Fushman D, Fenselau C. Unexpected trypsin cleavage at ubiquitinated lysines. Analytical Chemistry. PMID 26182167 DOI: 10.1021/Acs.Analchem.5B01960  0.56
2015 Nowicka U, Zhang D, Walker O, Krutauz D, Castañeda CA, Chaturvedi A, Chen TY, Reis N, Glickman MH, Fushman D. DNA-damage-inducible 1 protein (Ddi1) contains an uncharacteristic ubiquitin-like domain that binds ubiquitin. Structure (London, England : 1993). 23: 542-57. PMID 25703377 DOI: 10.1016/J.Str.2015.01.010  0.56
2015 Yu Z, Livnat-Levanon N, Kleifeld O, Mansour W, Nakasone MA, Castaneda CA, Dixon EK, Fushman D, Reis N, Pick E, Glickman MH. Base-CP proteasome can serve as a platform for stepwise lid formation. Bioscience Reports. PMID 25628127 DOI: 10.1042/BSR20140173  0.56
2014 Lee AE, Castañeda CA, Wang Y, Fushman D, Fenselau C. Preparing to read the ubiquitin code: a middle-out strategy for characterization of all lysine-linked diubiquitins. Journal of Mass Spectrometry : Jms. 49: 1272-8. PMID 25476945 DOI: 10.1002/Jms.3458  0.56
2014 Robinson AC, Castañeda CA, Schlessman JL, García-Moreno EB. Structural and thermodynamic consequences of burial of an artificial ion pair in the hydrophobic interior of a protein. Proceedings of the National Academy of Sciences of the United States of America. 111: 11685-90. PMID 25074910 DOI: 10.1073/Pnas.1402900111  0.56
2014 Lee SY, Pullen L, Virgil DJ, Castañeda CA, Abeykoon D, Bolon DNA, Fushman D. Alanine scan of core positions in ubiquitin reveals links between dynamics, stability, and function Journal of Molecular Biology. 426: 1377-1389. PMID 24361330 DOI: 10.1016/J.Jmb.2013.10.042  0.56
2013 Berlin K, Castañeda CA, Schneidman-Duhovny D, Sali A, Nava-Tudela A, Fushman D. Recovering a representative conformational ensemble from underdetermined macromolecular structural data. Journal of the American Chemical Society. 135: 16595-609. PMID 24093873 DOI: 10.1021/Ja4083717  0.56
2013 Castañeda CA, Kashyap TR, Nakasone MA, Krueger S, Fushman D. Unique structural, dynamical, and functional properties of k11-linked polyubiquitin chains. Structure (London, England : 1993). 21: 1168-81. PMID 23823328 DOI: 10.1016/J.Str.2013.04.029  0.56
2013 Dixon EK, Castañeda CA, Kashyap TR, Wang Y, Fushman D. Nonenzymatic assembly of branched polyubiquitin chains for structural and biochemical studies. Bioorganic & Medicinal Chemistry. 21: 3421-9. PMID 23557636 DOI: 10.1016/J.Bmc.2013.02.052  0.56
2012 Lange A, Castañeda C, Hoeller D, Lancelin JM, Fushman D, Walker O. Evidence for cooperative and domain-specific binding of the signal transducing adaptor molecule 2 (STAM2) to Lys63-linked diubiquitin. The Journal of Biological Chemistry. 287: 18687-99. PMID 22493438 DOI: 10.1074/Jbc.M111.324954  0.56
2011 Castañeda C, Liu J, Chaturvedi A, Nowicka U, Cropp TA, Fushman D. Nonenzymatic assembly of natural polyubiquitin chains of any linkage composition and isotopic labeling scheme. Journal of the American Chemical Society. 133: 17855-68. PMID 21962295 DOI: 10.1021/Ja207220G  0.56
2011 Castañeda CA, Spasser L, Bavikar SN, Brik A, Fushman D. Segmental isotopic labeling of ubiquitin chains to unravel monomer-specific molecular behavior. Angewandte Chemie (International Ed. in English). 50: 11210-4. PMID 21957015 DOI: 10.1002/Anie.201104649  0.56
2011 Isom DG, Castañeda CA, Cannon BR, García-Moreno B. Large shifts in pKa values of lysine residues buried inside a protein. Proceedings of the National Academy of Sciences of the United States of America. 108: 5260-5. PMID 21389271 DOI: 10.1073/Pnas.1010750108  0.84
2011 Castañeda CA, Liu J, Kashyap TR, Singh RK, Fushman D, Cropp TA. Controlled enzymatic synthesis of natural-linkage, defined-length polyubiquitin chains using lysines with removable protecting groups. Chemical Communications (Cambridge, England). 47: 2026-8. PMID 21212884 DOI: 10.1039/C0Cc04868B  0.56
2011 Chimenti MS, Castañeda CA, Majumdar A, García-Moreno E B. Structural origins of high apparent dielectric constants experienced by ionizable groups in the hydrophobic core of a protein. Journal of Molecular Biology. 405: 361-77. PMID 21059359 DOI: 10.1016/J.Jmb.2010.10.001  0.36
2011 Doctrow BM, Castañeda CA, Fitch C, Majumdar A, Schlessman JL, Cieplak M, García-Moreno B. Cooperativity in a Cluster of Carboxylic Groups in the Active Site of a Protein Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.502  0.56
2011 Robinson A, Castaneda C, Schlessman J, Garcia-Moreno B. Ion Pairs in the Hydrophobic Interior of a Protein: How Do Proteins Dissolve Salt in Oil? Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.1376  0.48
2010 Liu J, Castañeda CA, Wilkins BJ, Fushman D, Cropp TA. Condensed E. coli cultures for highly efficient production of proteins containing unnatural amino acids. Bioorganic & Medicinal Chemistry Letters. 20: 5613-6. PMID 20805030 DOI: 10.1016/J.Bmcl.2010.08.049  0.56
2010 Isom DG, Castañeda CA, Cannon BR, Velu PD, García-Moreno E B. Charges in the hydrophobic interior of proteins. Proceedings of the National Academy of Sciences of the United States of America. 107: 16096-100. PMID 20798341 DOI: 10.1073/Pnas.1004213107  0.56
2009 Castañeda CA, Fitch CA, Majumdar A, Khangulov V, Schlessman JL, García-Moreno BE. Molecular determinants of the pKa values of Asp and Glu residues in staphylococcal nuclease. Proteins. 77: 570-88. PMID 19533744 DOI: 10.1002/Prot.22470  0.56
2009 Harms MJ, Castañeda CA, Schlessman JL, Sue GR, Isom DG, Cannon BR, García-Moreno E B. The pK(a) values of acidic and basic residues buried at the same internal location in a protein are governed by different factors. Journal of Molecular Biology. 389: 34-47. PMID 19324049 DOI: 10.1016/J.Jmb.2009.03.039  0.56
2008 Isom DG, Cannon BR, Castañeda CA, Robinson A, García-Moreno B. High tolerance for ionizable residues in the hydrophobic interior of proteins. Proceedings of the National Academy of Sciences of the United States of America. 105: 17784-8. PMID 19004768 DOI: 10.1073/Pnas.0805113105  0.56
2004 Riethman H, Ambrosini A, Castaneda C, Finklestein J, Hu XL, Mudunuri U, Paul S, Wei J. Mapping and initial analysis of human subtelomeric sequence assemblies. Genome Research. 14: 18-28. PMID 14707167 DOI: 10.1101/Gr.1245004  0.56
2003 Riethman H, Ambrosini A, Castaneda C, Finklestein JM, Hu XL, Paul S, Wei J. Human subtelomeric DNA. Cold Spring Harbor Symposia On Quantitative Biology. 68: 39-47. PMID 15338601 DOI: 10.1101/Sqb.2003.68.39  0.56
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