Ignacia Echeverria, Ph.D. - Publications

Affiliations: 
2011 Johns Hopkins University, Baltimore, MD 
Area:
General Biophysics, Physical Chemistry

18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Kwon Y, Kaake RM, Echeverria I, Suarez M, Karimian Shamsabadi M, Stoneham C, Ramirez PW, Kress J, Singh R, Sali A, Krogan N, Guatelli J, Jia X. Structural basis of CD4 downregulation by HIV-1 Nef. Nature Structural & Molecular Biology. PMID 32719457 DOI: 10.1038/S41594-020-0463-Z  0.301
2020 Gutierrez C, Chemmama IE, Mao H, Yu C, Echeverria I, Block SA, Rychnovsky SD, Zheng N, Sali A, Huang L. Structural dynamics of the human COP9 signalosome revealed by cross-linking mass spectrometry and integrative modeling. Proceedings of the National Academy of Sciences of the United States of America. PMID 32034103 DOI: 10.1073/Pnas.1915542117  0.389
2019 Saltzberg D, Greenberg CH, Viswanath S, Chemmama I, Webb B, Pellarin R, Echeverria I, Sali A. Modeling Biological Complexes Using Integrative Modeling Platform. Methods in Molecular Biology (Clifton, N.J.). 2022: 353-377. PMID 31396911 DOI: 10.1007/978-1-4939-9608-7_15  0.307
2018 Kim SJ, Fernandez-Martinez J, Nudelman I, Shi Y, Zhang W, Raveh B, Herricks T, Slaughter BD, Hogan JA, Upla P, Chemmama IE, Pellarin R, Echeverria I, Shivaraju M, Chaudhury AS, et al. Integrative structure and functional anatomy of a nuclear pore complex. Nature. 555: 475-482. PMID 29539637 DOI: 10.1017/S1431927618006542  0.362
2018 Echeverria I, Sali A. Integrative Structure Determination of Protein Complexes by Inferred Structural Equivalence Biophysical Journal. 114. DOI: 10.1016/J.Bpj.2017.11.383  0.349
2018 Joong Kim S, Fernandez-Martinez J, Nudelman I, Shi Y, Zhang W, Raveh B, Upla P, Chemmama IE, Pellarin R, Echeverria I, Ludtke SJ, Akey CW, Chait BT, Sali A, Rout MP. Structure and Functional Anatomy of the Nuclear Pore Complex Biophysical Journal. 114: 372a. DOI: 10.1016/J.Bpj.2017.11.2063  0.31
2017 Zhou CY, Stoddard CI, Johnston JB, Trnka MJ, Echeverria I, Palovcak E, Sali A, Burlingame AL, Cheng Y, Narlikar GJ. Regulation of Rvb1/Rvb2 by a Domain within the INO80 Chromatin Remodeling Complex Implicates the Yeast Rvbs as Protein Assembly Chaperones. Cell Reports. 19: 2033-2044. PMID 28591576 DOI: 10.1016/J.Celrep.2017.05.029  0.355
2016 Schulze-Gahmen U, Echeverria I, Stjepanovic G, Bai Y, Lu H, Schneidman-Duhovny D, Doudna JA, Zhou Q, Sali A, Hurley JH. Insights into HIV-1 proviral transcription from the structure and dynamics of the Tat:AFF4:P-TEFb:TAR complex. Elife. 5. PMID 27731797 DOI: 10.7554/Elife.15910  0.337
2016 Schulze-Gahmen U, Echeverria I, Stjepanovic G, Bai Y, Lu H, Schneidman-Duhovny D, Doudna JA, Zhou Q, Sali A, Hurley JH. Author response: Insights into HIV-1 proviral transcription from integrative structure and dynamics of the Tat:AFF4:P-TEFb:TAR complex Elife. DOI: 10.7554/Elife.15910.025  0.304
2015 Winogradoff D, Echeverria I, Potoyan DA, Papoian GA. The Acetylation Landscape of the H4 Histone Tail: Disentangling the Interplay between the Specific and Cumulative Effects. Journal of the American Chemical Society. 137: 6245-53. PMID 25905561 DOI: 10.1021/Jacs.5B00235  0.336
2015 Echeverria I, Papoian GA. DNA exit ramps are revealed in the binding landscapes obtained from simulations in helical coordinates. Plos Computational Biology. 11: e1003980. PMID 25675216 DOI: 10.1371/Journal.Pcbi.1003980  0.364
2015 Echeverria I, Papoian GA. Characterizing the Binding Landscape Around DNA: Is DNA a Slide? Biophysical Journal. 108: 76a. DOI: 10.1016/J.Bpj.2014.11.448  0.356
2015 Winogradoff D, Echeverria I, Papoian G. The Acetylation Landscape of the H4 Histone Tail Biophysical Journal. 108: 388a. DOI: 10.1016/J.Bpj.2014.11.2128  0.308
2014 Echeverria I, Makarov DE, Papoian GA. Concerted dihedral rotations give rise to internal friction in unfolded proteins. Journal of the American Chemical Society. 136: 8708-13. PMID 24844314 DOI: 10.1021/Ja503069K  0.335
2014 Echeverria I, Papoian GA. Structural heterogeneity and dynamics of the unfolded ensemble Israel Journal of Chemistry. DOI: 10.1002/Ijch.201400030  0.339
2013 Echeverria I, Makarov DE, Papoian G. Insight into the Molecular Origins of the Internal Friction in Unfolded Proteins Biophysical Journal. 104: 188a. DOI: 10.1016/J.Bpj.2012.11.1061  0.361
2011 Echeverria I, Amzel LM. Disaccharide binding to galectin-1: free energy calculations and molecular recognition mechanism. Biophysical Journal. 100: 2283-92. PMID 21539798 DOI: 10.1016/J.Bpj.2011.03.032  0.366
2011 Echeverria I, Amzel LM. Disaccharide Binding to Galectin-1: Free Energy Calculations and Insight of the Molecular Recognition Mechanism Biophysical Journal. 100: 147a-148a. DOI: 10.1016/J.Bpj.2010.12.1012  0.358
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