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Naim Rashid, Ph.D. - Publications

Affiliations: 
2013 Biostatistics University of North Carolina, Chapel Hill, Chapel Hill, NC 
Area:
Biostatistics Biology, Bioinformatics Biology
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25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Heiling HM, Rashid NU, Li Q, Ibrahim JG. glmmPen: High Dimensional Penalized Generalized Linear Mixed Models. The R Journal. 15: 106-128. PMID 38818017 DOI: 10.32614/rj-2023-086  0.412
2024 Heiling HM, Rashid NU, Li Q, Peng XL, Yeh JJ, Ibrahim JG. Efficient computation of high-dimensional penalized generalized linear mixed models by latent factor modeling of the random effects. Biometrics. 80. PMID 38497825 DOI: 10.1093/biomtc/ujae016  0.407
2023 Lim DK, Rashid NU, Oliva JB, Ibrahim JG. Deeply-Learned Generalized Linear Models with Missing Data. Journal of Computational and Graphical Statistics : a Joint Publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America. 33: 638-650. PMID 39184956 DOI: 10.1080/10618600.2023.2276122  0.371
2021 Heiling HM, Wilson DR, Rashid NU, Sun W, Ibrahim JG. Estimating Cell Type Composition using Isoform Expression One Gene at a Time. Biometrics. PMID 34921386 DOI: 10.1111/biom.13614  0.439
2021 Lim DK, Rashid NU, Ibrahim JG. MODEL-BASED FEATURE SELECTION AND CLUSTERING OF RNA-SEQ DATA FOR UNSUPERVISED SUBTYPE DISCOVERY. The Annals of Applied Statistics. 15: 481-508. PMID 34457104 DOI: 10.1214/20-aoas1407  0.418
2021 Baldoni PL, Rashid NU, Ibrahim JG. Efficient detection and classification of epigenomic changes under multiple conditions. Biometrics. PMID 33860525 DOI: 10.1111/biom.13477  0.42
2020 Rashid NU, Li Q, Yeh JJ, Ibrahim JG. Modeling Between-Study Heterogeneity for Improved Replicability in Gene Signature Selection and Clinical Prediction. Journal of the American Statistical Association. 115: 1125-1138. PMID 33012902 DOI: 10.1080/01621459.2019.1671197  0.48
2019 Feng W, Simpson DA, Carvajal-Garcia J, Price BA, Kumar RJ, Mose LE, Wood RD, Rashid N, Purvis JE, Parker JS, Ramsden DA, Gupta GP. Genetic determinants of cellular addiction to DNA polymerase theta. Nature Communications. 10: 4286. PMID 31537809 DOI: 10.1038/S41467-019-12234-1  0.333
2019 Baldoni PL, Rashid NU, Ibrahim JG. Improved Detection of Epigenomic Marks With Mixed Effects Hidden Markov Models. Biometrics. PMID 31081192 DOI: 10.1111/Biom.13083  0.459
2018 Yang Y, Adebali O, Wu G, Selby CP, Chiou YY, Rashid N, Hu J, Hogenesch JB, Sancar A. Cisplatin-DNA adduct repair of transcribed genes is controlled by two circadian programs in mouse tissues. Proceedings of the National Academy of Sciences of the United States of America. PMID 29735688 DOI: 10.1073/Pnas.1804493115  0.303
2017 Tran AQM, Sullivan SA, Cassling C, Rashid N, Hayes DN, Bae-Jump VL. High frequency gene mutations in cervical cancer patients enrolled on a DNA sequencing protocol Gynecologic Oncology. 145: 104-105. DOI: 10.1016/J.Ygyno.2017.03.247  0.305
2016 Rashid NU, Sun W, Ibrahim JG. A STATISTICAL MODEL TO ASSESS (ALLELE-SPECIFIC) ASSOCIATIONS BETWEEN GENE EXPRESSION AND EPIGENETIC FEATURES USING SEQUENCING DATA. The Annals of Applied Statistics. 10: 2254-2273. PMID 29034055 DOI: 10.1214/16-Aoas973  0.466
2016 Chiou YY, Yang Y, Rashid N, Ye R, Selby CP, Sancar A. Mammalian Period represses and de-represses transcription by displacing CLOCK-BMAL1 from promoters in a Cryptochrome-dependent manner. Proceedings of the National Academy of Sciences of the United States of America. PMID 27688755 DOI: 10.1073/Pnas.1612917113  0.302
2016 Roque DR, Makowski L, Chen TH, Rashid N, Hayes DN, Bae-Jump V. Association between differential gene expression and body mass index among endometrial cancers from The Cancer Genome Atlas Project. Gynecologic Oncology. PMID 27288544 DOI: 10.1016/J.Ygyno.2016.06.006  0.306
2016 White B, Bae-Jump VL, Rashid N. Correlation of endometrial biopsy and hysterectomy gene expression profiles in patients with endometrial cancer Gynecologic Oncology. 141: 182. DOI: 10.1016/J.Ygyno.2016.04.470  0.318
2014 Rashid NU, Sun W, Ibrahim JG. Some Statistical Strategies for DAE-seq Data Analysis: Variable Selection and Modeling Dependencies among Observations. Journal of the American Statistical Association. 109: 78-94. PMID 24678134 DOI: 10.1080/01621459.2013.869222  0.454
2014 Bolli N, Avet-Loiseau H, Wedge DC, Van Loo P, Alexandrov LB, Martincorena I, Dawson KJ, Iorio F, Nik-Zainal S, Bignell GR, Hinton JW, Li Y, Tubio JM, McLaren S, O' Meara S, ... ... Rashid N, et al. Heterogeneity of genomic evolution and mutational profiles in multiple myeloma. Nature Communications. 5: 2997. PMID 24429703 DOI: 10.1038/Ncomms3997  0.305
2014 Cleynen A, Szalat R, Samur MK, Rashid N, Parmigiani G, Munshi NC, Avet-Loiseau H. Frequent Igh Fusion Transcripts with Clinical Impact in Multiple Myeloma Blood. 124: 721-721. DOI: 10.1182/Blood.V124.21.721.721  0.336
2014 Samur MK, Rashid N, Cleynen A, Fulciniti M, Sperling A, Minvielle S, Anderson KC, Parmigiani G, Avet-Loiseau H, Munshi NC. Long Intergenic Non-Coding RNAs (lincRNA) Impacts Biology and Clinical Outcome in Multiple Myeloma Blood. 124: 642-642. DOI: 10.1182/Blood.V124.21.642.642  0.377
2014 Rashid N, Minvielle S, Magrangeas F, Samur MK, Clynen A, Sperling A, Tai Y, Fulciniti M, Richardson PG, Attal M, Moreau P, Anderson KC, Parmigiani G, Avet-Loiseau H, Munshi NC. Alternative Splicing Is a Frequent Event and Impacts Clinical Outcome in Myeloma: A Large RNA-Seq Data Analysis of Newly-Diagnosed Myeloma Patients Blood. 124: 638-638. DOI: 10.1182/Blood.V124.21.638.638  0.379
2014 Song W, Zhang C, Hu Y, Gkotzamanidou M, Shah P, Shan W, Yang G, Li Y, Sperling A, Rashid N, Samur MK, Amin SB, Tai Y, Hideshima T, Parmigiani G, et al. Bone Marrow Microenvironment Regulates Alternative Splicing Events in Myeloma Cells through Downregulation of RNA Binding Protein Fox2 Blood. 124: 4714-4714. DOI: 10.1182/Blood.V124.21.4714.4714  0.328
2014 Gkotzamanidou M, Shammas M, Souliotis VL, Song W, Pal J, Nanjappa P, Rashid N, Anderson KC, Dimopoulos MA, Bradner J, Munshi NC. Ongoing Spontaneous DNA Damage and the Role of Aberrant Epigenome in Multiple Myeloma Blood. 124: 3398-3398. DOI: 10.1182/Blood.V124.21.3398.3398  0.316
2014 Fulciniti M, Bhasin M, Samur MK, Bandi RL, Rashid N, Jaime R, Lin C, Anderson KC, Parmigiani G, Bradner JE, Munshi NC. Functional and Clinical Relevance of Splicing Factor SRSF1 in Multiple Myeloma (MM) Blood. 124: 3388-3388. DOI: 10.1182/Blood.V124.21.3388.3388  0.372
2013 Zhang C, Hu Y, Gkotzamanidou M, Shah P, Shan W, Yang G, Amin SB, Tai Y, Li Y, Sperling A, Rashid N, Magrangeas F, Minvielle S, Avet-Loiseau H, Anderson KC, et al. Bone Marrow Microenvironment Affects The Pathogenesis Of Multiple Myeloma Through Downregulation Of Alternative Splicing Factor Fox2 In Myeloma Cells Blood. 122: 3085-3085. DOI: 10.1182/Blood.V122.21.3085.3085  0.312
2011 Rashid NU, Giresi PG, Ibrahim JG, Sun W, Lieb JD. ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions. Genome Biology. 12: R67. PMID 21787385 DOI: 10.1186/Gb-2011-12-7-R67  0.433
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