Kimon C. Kanelakis, Ph.D. - Related publications

Affiliations: 
2002 University of Michigan, Ann Arbor, Ann Arbor, MI 
Area:
Pharmacology, Molecular Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Medfisch SM, Muehl EM, Morrissey JH, Bailey RC. Phosphatidylethanolamine-phosphatidylserine binding synergy of seven coagulation factors revealed using Nanodisc arrays on silicon photonic sensors. Scientific Reports. 10: 17407. PMID 33060620 DOI: 10.1038/s41598-020-73647-3   
2020 Chen M, Feng Z, Wang S, Lin W, Xie XQ. MCCS, a novel characterization method for protein-ligand complex. Briefings in Bioinformatics. PMID 33051641 DOI: 10.1093/bib/bbaa239   
2020 Arooj M, Shehadi I, Nassab CN, Mohamed AA. Physicochemical stability study of protein-benzoic acid complexes using molecular dynamics simulations. Amino Acids. 52: 1353-1362. PMID 33006112 DOI: 10.1007/s00726-020-02897-2   
2020 Miyamae Y, Chen LC, Utsugi Y, Farrants H, Wandless TJ. A Method for Conditional Regulation of Protein Stability in Native or Near-Native Form. Cell Chemical Biology. PMID 33007216 DOI: 10.1016/j.chembiol.2020.09.004   
2020 Sung YY, Son E, Im G, Kim DS. Herbal Combination of and Inhibits Adipogenesis and Promotes Browning via AMPK Activation in 3T3-L1 Adipocytes. Plants (Basel, Switzerland). 9. PMID 33114092 DOI: 10.3390/plants9111422   
2020 Basu A, Sarkar A, Maulik U. Molecular docking study of potential phytochemicals and their effects on the complex of SARS-CoV2 spike protein and human ACE2. Scientific Reports. 10: 17699. PMID 33077836 DOI: 10.1038/s41598-020-74715-4   
2020 Mondal P, Natesh J, Abdul Salam AA, Thiyagarajan S, Meeran SM. Traditional medicinal plants against replication, maturation and transmission targets of SARS-CoV-2: computational investigation. Journal of Biomolecular Structure & Dynamics. 1-18. PMID 33150860 DOI: 10.1080/07391102.2020.1842246   
2020 Adihou H, Gopalakrishnan R, Förster T, Guéret SM, Gasper R, Geschwindner S, Carrillo García C, Karatas H, Pobbati AV, Vazquez-Chantada M, Davey P, Wassvik CM, Pang JKS, Soh BS, Hong W, et al. A protein tertiary structure mimetic modulator of the Hippo signalling pathway. Nature Communications. 11: 5425. PMID 33110077 DOI: 10.1038/s41467-020-19224-8   
2020 Nowak K, Rosenthal F, Karlberg T, Bütepage M, Thorsell AG, Dreier B, Grossmann J, Sobek J, Imhof R, Lüscher B, Schüler H, Plückthun A, Leslie Pedrioli DM, Hottiger MO. Engineering Af1521 improves ADP-ribose binding and identification of ADP-ribosylated proteins. Nature Communications. 11: 5199. PMID 33060572 DOI: 10.1038/s41467-020-18981-w   
2020 Avsar SY, Kapinos LE, Schoenenberger CA, Schertler GFX, Mühle J, Meger B, Lim RYH, Ostermaier MK, Lesca E, Palivan CG. Immobilization of arrestin-3 on different biosensor platforms for evaluating GPCR binding. Physical Chemistry Chemical Physics : Pccp. PMID 33079118 DOI: 10.1039/d0cp01464h   
2020 Xue W, Zhang SX, He WT, Hong JY, Jiang LL, Hu HY. Domain interactions reveal auto-inhibition of the deubiquitinating enzyme USP19 and its activation by HSP90 in modulation of huntingtin aggregation. The Biochemical Journal. PMID 33094816 DOI: 10.1042/BCJ20200536   
2020 Tu M, Zheng X, Liu P, Wang S, Yan Z, Sun Q, Liu X. Typical organic pollutant-protein interactions studies through spectroscopy, molecular docking and crystallography: A review. The Science of the Total Environment. 142959. PMID 33121791 DOI: 10.1016/j.scitotenv.2020.142959   
2020 Swargiary A, Mahmud S, Saleh MA. Screening of phytochemicals as potent inhibitor of 3-chymotrypsin and papain-like proteases of SARS-CoV2: an in silico approach to combat COVID-19. Journal of Biomolecular Structure & Dynamics. 1-15. PMID 33089730 DOI: 10.1080/07391102.2020.1835729   
2020 Martin-Martin I, Smith LB, Chagas AC, Sá-Nunes A, Shrivastava G, Valenzuela-Leon PC, Calvo E. D7 Salivary Protein Prevents Host Hemostasis and Inflammation. Biomolecules. 10. PMID 32992542 DOI: 10.3390/biom10101372   
2020 Rawlings ND, Bateman A. How to use the MEROPS database and website to help understand peptidase specificity. Protein Science : a Publication of the Protein Society. PMID 32920969 DOI: 10.1002/pro.3948   
2020 North OI, Davidson AR. Phage proteins required for tail fiber assembly also bind specifically to the surface of host bacterial strains. Journal of Bacteriology. PMID 33139482 DOI: 10.1128/JB.00406-20   
2020 Sun X, Cai X, Yin K, Gu L, Shen Y, Hu B, Wang Y, Chen Y, Zhu Y, Jia B, Sun M. Wild soybean SNARE proteins BET1s mediate the subcellular localization of the cytoplasmic receptor-like kinases CRCK1s to modulate salt stress responses. The Plant Journal : For Cell and Molecular Biology. PMID 33160290 DOI: 10.1111/tpj.15072   
2020 Boonen A, Singh AK, Hout AV, Das K, Loy TV, Noppen S, Schols D. Development of a Novel SPR Assay to Study CXCR4-Ligand Interactions. Biosensors. 10. PMID 33096938 DOI: 10.3390/bios10100150   
2020 Will JM, Erbacher C, Sperling M, Karst U. A mass spectrometry-based approach gives new insight into organotin-protein interactions. Metallomics : Integrated Biometal Science. PMID 32930317 DOI: 10.1039/d0mt00171f   
2020 Stadmiller SS, Aguilar JS, Parnham S, Pielak GJ. Protein-Peptide Binding Energetics under Crowded Conditions. The Journal of Physical Chemistry. B. PMID 32936642 DOI: 10.1021/acs.jpcb.0c05578   
2020 Emirik M. Potential therapeutic effect of turmeric contents against SARS-CoV-2 compared with experimental COVID-19 therapies: in silico study. Journal of Biomolecular Structure & Dynamics. 1-14. PMID 33078675 DOI: 10.1080/07391102.2020.1835719   
2020 Shin G, Lim SI. Site-specific proximity ligation provides molecular insights into biologically relevant interfaces of protein-protein interaction. Biochemical and Biophysical Research Communications. PMID 33008597 DOI: 10.1016/j.bbrc.2020.09.097   
2020 Shin G, Lim SI. Site-specific proximity ligation provides molecular insights into biologically relevant interfaces of protein-protein interaction. Biochemical and Biophysical Research Communications. PMID 33008597 DOI: 10.1016/j.bbrc.2020.09.097   
2020 Fiorentini F, Esposito D, Rittinger K. Does it take two to tango? RING domain self-association and activity in TRIM E3 ubiquitin ligases. Biochemical Society Transactions. PMID 33170204 DOI: 10.1042/BST20200383   
2020 Zhao B, Zhang Z, Chen X, Shen Y, Qin Y, Yang X, Xing Z, Zhang S, Long X, Zhang Y, An S, Wu H, Qi Y. The important roles of protein SUMOylation in the occurrence and development of leukemia and clinical implications. Journal of Cellular Physiology. PMID 33151565 DOI: 10.1002/jcp.30143   
2020 Niu J, Luo G, Liu X, Huang Y, Tang J, Wang B, Lu Y, Cai J, Jian J. Characterization and functional analysis of a galectin-related protein B from Nile tilapia involved in the immune response to bacterial infection. Journal of Fish Diseases. PMID 33040388 DOI: 10.1111/jfd.13273   
2020 El Kantar S, Nehmeh B, Saad P, Mitri G, Estephan C, Mroueh M, Akoury E, Taleb RI. Derivatization and combination therapy of current COVID-19 therapeutic agents: a review of mechanistic pathways, adverse effects, and binding sites. Drug Discovery Today. PMID 32801052 DOI: 10.1016/j.drudis.2020.08.002   
2020 Cheng L, Zhang W, Hu J, Zhang Z, Liu Y, Lin Y. Characterization of the Key Region and Putative Phosphorylation Sites of EcaICE1 in its Molecular Interaction with the EcaHOS1 Protein in Eucalyptus camaldulensis. Plant Biology (Stuttgart, Germany). PMID 33107181 DOI: 10.1111/plb.13205   
2020 Jussing E, Lu L, Grafström J, Tegnebratt T, Arnberg F, Rosik HW, Wennborg A, Holmin S, Feldwisch J, Stone-Elander S. [Ga]ABY-028: an albumin-binding domain (ABD) protein-based imaging tracer for positron emission tomography (PET) studies of altered vascular permeability and predictions of albumin-drug conjugate transport. Ejnmmi Research. 10: 106. PMID 32960353 DOI: 10.1186/s13550-020-00694-2   
2020 Li Z, Lin Y, Song H, Qin X, Yu Z, Zhang Z, Dong G, Li X, Shi X, Du L, Zhao W, Li M. First small-molecule PROTACs for G protein-coupled receptors: inducing -adrenergic receptor degradation. Acta Pharmaceutica Sinica. B. 10: 1669-1679. PMID 33088687 DOI: 10.1016/j.apsb.2020.01.014   
2020 Banerjee S. Effect of glyoxal and 1-methylisatin on stress-induced fibrillation of Hen Egg White Lysozyme: Insight into the anti-amyloidogenic property of the compounds with possible therapeutic implications. International Journal of Biological Macromolecules. PMID 33065156 DOI: 10.1016/j.ijbiomac.2020.10.017   
2020 Masuzawa T, Sato S, Niwa T, Taguchi H, Nakamura H, Oyoshi T. G-quadruplex-proximity protein labeling based on peroxidase activity. Chemical Communications (Cambridge, England). 56: 11641-11644. PMID 33000777 DOI: 10.1039/d0cc02571b   
2020 Ahamad S, Gupta D, Kumar V. Targeting SARS-CoV-2 nucleocapsid oligomerization: Insights from molecular docking and molecular dynamics simulations. Journal of Biomolecular Structure & Dynamics. 1-14. PMID 33140703 DOI: 10.1080/07391102.2020.1839563   
2020 Tan F, Sun N, Zhang L, Wu J, Xiao S, Tan Q, Uversky VN, Liu Y. Functional characterization of an unknown soybean intrinsically disordered protein in vitro and in Escherichia coli. International Journal of Biological Macromolecules. PMID 33137381 DOI: 10.1016/j.ijbiomac.2020.10.211   
2020 Yamanaka S, Shoya Y, Matsuoka S, Nishida-Fukuda H, Shibata N, Sawasaki T. An IMiD-induced SALL4 degron system for selective degradation of target proteins. Communications Biology. 3: 515. PMID 32948804 DOI: 10.1038/s42003-020-01240-5   
2020 Uhlemann EE, Yu CH, Patry J, Dolgova N, Lutsenko S, Muyldermans S, Dmitriev OY. Nanobodies against the metal binding domains of ATP7B as tools to study copper transport in the cell. Metallomics : Integrated Biometal Science. PMID 33094790 DOI: 10.1039/d0mt00191k   
2020 Lipsh-Sokolik R, Listov D, Fleishman SJ. The AbDesign computational pipeline for modular backbone assembly and design of binders and enzymes. Protein Science : a Publication of the Protein Society. PMID 33040418 DOI: 10.1002/pro.3970   
2020 Soini L, Leysen S, Davis J, Westwood M, Ottmann C. The 14-3-3/SLP76 protein-protein interaction in T-cell receptor signaling: a structural and biophysical characterization. Febs Letters. PMID 33159816 DOI: 10.1002/1873-3468.13993   
2020 Lv B, Yang HL, Peng YD, Wang J, Zeng Z, Li N, Tang YE, Wang Z, Song QS. Cadmium exposure alters expression of protective enzymes and protein processing genes in venom glands of the wolf spider Pardosa pseudoannulata. Environmental Pollution (Barking, Essex : 1987). 268: 115847. PMID 33130443 DOI: 10.1016/j.envpol.2020.115847   
2020 Kehinde I, Ramharack P, Nlooto M, Gordon M. Molecular dynamic mechanism(s) of inhibition of bioactive antiviral phytochemical compounds targeting cytochrome P450 3A4 and P-glycoprotein. Journal of Biomolecular Structure & Dynamics. 1-11. PMID 33063648 DOI: 10.1080/07391102.2020.1821780   
2020 Tran-Nguyen TS, Ngo-Luong DT, Nguyen-Phuoc KH, Tran TL, Tran-Van H. Simultaneously targeting nitrocellulose and antibody by a dual-headed protein. Protein Expression and Purification. 177: 105764. PMID 32971296 DOI: 10.1016/j.pep.2020.105764   
2020 Su Z, Dhusia K, Wu Y. Understand the Functions of Scaffold Proteins in Cell Signaling by a Mesoscopic Simulation Method. Biophysical Journal. PMID 33113350 DOI: 10.1016/j.bpj.2020.10.002   
2020 Sayyed-Ahmad A, Gorfe AA. How to make an undruggable enzyme druggable: lessons from ras proteins. Advances in Protein Chemistry and Structural Biology. 122: 181-202. PMID 32951811 DOI: 10.1016/bs.apcsb.2020.05.003   
2020 Shibasaki S, Karasaki M, Matsui K, Iwasaki T. Functional Evaluation of anti-TNF-α Antibody Molecules in Biochemical Detection and Inhibition to Signalling Pathways of a Synovial Cell. Current Pharmaceutical Biotechnology. PMID 33069194 DOI: 10.2174/1389201021666201016143730   
2020 Hochreiter B, Chong CS, Hartig A, Maurer-Stroh S, Berger J, Schmid JA, Kunze M. A Novel FRET Approach Quantifies the Interaction Strength of Peroxisomal Targeting Signals and Their Receptor in Living Cells. Cells. 9. PMID 33143123 DOI: 10.3390/cells9112381   
2020 Bandekar D, Mohapatra S, Hazra M, Hazra S, Biswas S. N-terminal truncation of VC0395_0300 protein from Vibrio cholerae does not lead to loss of diguanylate cyclase activity. Biophysical Chemistry. 268: 106493. PMID 33152620 DOI: 10.1016/j.bpc.2020.106493   
2020 Di Rienzo L, Milanetti E, Testi C, Montemiglio LC, Baiocco P, Boffi A, Ruocco G. A novel strategy for molecular interfaces optimization: The case of Ferritin-Transferrin receptor interaction. Computational and Structural Biotechnology Journal. 18: 2678-2686. PMID 33101606 DOI: 10.1016/j.csbj.2020.09.020   
2020 Kang TH, Seong BL. Solubility, Stability, and Avidity of Recombinant Antibody Fragments Expressed in Microorganisms. Frontiers in Microbiology. 11: 1927. PMID 33101218 DOI: 10.3389/fmicb.2020.01927   
2020 Wang H, Shi X, Qiu M, Lv S, Zheng H, Niu B, Liu H. Hydrogen Sulfide Plays an Important Role by Influencing NLRP3 inflammasome. International Journal of Biological Sciences. 16: 2752-2760. PMID 33110394 DOI: 10.7150/ijbs.47595   
2020 Chen J, Gao K, Wang R, Nguyen DD, Wei GW. Review of COVID-19 Antibody Therapies. Annual Review of Biophysics. PMID 33064571 DOI: 10.1146/annurev-biophys-062920-063711