| Year |
Citation |
Score |
| 2022 |
Rush TA, Tannous J, Lane MJ, Gopalakrishnan Meena M, Carrell AA, Golan JJ, Drott MT, Cottaz S, Fort S, Ané JM, Keller NP, Pelletier DA, Jacobson DA, Kainer D, Abraham PE, et al. Lipo-Chitooligosaccharides Induce Specialized Fungal Metabolite Profiles That Modulate Bacterial Growth. Msystems. e0105222. PMID 36453934 DOI: 10.1128/msystems.01052-22 |
0.33 |
|
| 2020 |
Pelletier DA, Li Z, Lu TS, Zhang L, Hu Z, Morris GP, Glavina Del Rio T, Wang D, Chen JG, Pan C. Genome Sequences of 42 Bacteria Isolated from Sorghum bicolor Roots. Microbiology Resource Announcements. 9. PMID 32912912 DOI: 10.1128/MRA.00736-20 |
0.351 |
|
| 2020 |
Xie M, Zhang J, Yao T, Bryan AC, Pu Y, Labbé J, Pelletier DA, Engle N, Morrell-Falvey JL, Schmutz J, Ragauskas AJ, Tschaplinski TJ, Chen F, Tuskan GA, Muchero W, et al. Arabidopsis C-terminal Binding Protein ANGUSTIFOLIA modulates transcriptional co-regulation of MYB46 and WRKY33. The New Phytologist. PMID 32706429 DOI: 10.1111/Nph.16826 |
0.377 |
|
| 2020 |
Carper DL, Schadt CW, Burdick LH, Kalluri UC, Pelletier DA. Draft Genome Sequence of sp. Strain BK434, Isolated from the Roots of Eastern Cottonwood. Microbiology Resource Announcements. 9. PMID 32467272 DOI: 10.1128/MRA.00351-20 |
0.307 |
|
| 2020 |
Carper DL, Lawrence TJ, Carrell AA, Pelletier DA, Weston DJ. DISCo-microbe: design of an identifiable synthetic community of microbes. Peerj. 8: e8534. PMID 32149021 DOI: 10.7717/Peerj.8534 |
0.315 |
|
| 2019 |
Henning JA, Weston DJ, Pelletier DA, Timm CM, Jawdy SS, Classen AT. Relatively rare root endophytic bacteria drive plant resource allocation patterns and tissue nutrient concentration in unpredictable ways. American Journal of Botany. PMID 31657872 DOI: 10.1002/Ajb2.1373 |
0.35 |
|
| 2018 |
Bortniak VL, Pelletier DA, Newman JD. Chryseobacterium populi sp. nov., isolated from Populus deltoides endosphere. International Journal of Systematic and Evolutionary Microbiology. PMID 30570477 DOI: 10.1099/Ijsem.0.003140 |
0.394 |
|
| 2018 |
Blair PM, Land ML, Piatek MJ, Jacobson DA, Lu TS, Doktycz MJ, Pelletier DA. Exploration of the Biosynthetic Potential of the Microbiome. Msystems. 3. PMID 30320216 DOI: 10.1128/mSystems.00045-18 |
0.302 |
|
| 2018 |
Stough JMA, Kolton M, Kostka JE, Weston DJ, Pelletier DA, Wilhelm SW. Diversity of active viral infections within the microbiome. Applied and Environmental Microbiology. PMID 30217851 DOI: 10.1128/Aem.01124-18 |
0.379 |
|
| 2018 |
Coutinho BG, Mevers E, Schaefer AL, Pelletier DA, Harwood CS, Clardy J, Greenberg EP. A plant-responsive bacterial-signaling system senses an ethanolamine derivative. Proceedings of the National Academy of Sciences of the United States of America. PMID 30190434 DOI: 10.1073/Pnas.1809611115 |
0.607 |
|
| 2018 |
Hasim S, Allison DP, Mendez B, Farmer AT, Pelletier DA, Retterer ST, Campagna SR, Reynolds TB, Doktycz MJ. Elucidating Duramycin's Bacterial Selectivity and Mode of Action on the Bacterial Cell Envelope. Frontiers in Microbiology. 9: 219. PMID 29491859 DOI: 10.3389/Fmicb.2018.00219 |
0.317 |
|
| 2017 |
Levy A, Salas Gonzalez I, Mittelviefhaus M, Clingenpeel S, Herrera Paredes S, Miao J, Wang K, Devescovi G, Stillman K, Monteiro F, Rangel Alvarez B, Lundberg DS, Lu TY, Lebeis S, Jin Z, ... ... Pelletier DA, et al. Genomic features of bacterial adaptation to plants. Nature Genetics. PMID 29255260 DOI: 10.1038/S41588-017-0012-9 |
0.417 |
|
| 2017 |
Cabugao KG, Timm CM, Carrell AA, Childs J, Lu TS, Pelletier DA, Weston DJ, Norby RJ. Root and Rhizosphere Bacterial Phosphatase Activity Varies with Tree Species and Soil Phosphorus Availability in Puerto Rico Tropical Forest. Frontiers in Plant Science. 8: 1834. PMID 29163572 DOI: 10.3389/Fpls.2017.01834 |
0.32 |
|
| 2016 |
Henning JA, Weston DJ, Pelletier DA, Timm CM, Jawdy SS, Classen AT. Root bacterial endophytes alter plant phenotype, but not physiology. Peerj. 4: e2606. PMID 27833797 DOI: 10.7717/Peerj.2606 |
0.371 |
|
| 2016 |
Schaefer AL, Oda Y, Coutinho BG, Pelletier DA, Weiburg J, Venturi V, Greenberg EP, Harwood CS. A LuxR Homolog in a Cottonwood Tree Endophyte That Activates Gene Expression in Response to a Plant Signal or Specific Peptides. Mbio. 7. PMID 27486195 DOI: 10.1128/Mbio.01101-16 |
0.608 |
|
| 2016 |
Utturkar SM, Cude WN, Robeson MS, Yang ZK, Klingeman DM, Land ML, Allman SL, Lu TS, Brown SD, Schadt CW, Podar M, Doktycz MJ, Pelletier DA. Enrichment of root endophytic bacteria from Populus deltoides and single-cell genomics analysis. Applied and Environmental Microbiology. PMID 27422831 DOI: 10.1128/Aem.01285-16 |
0.438 |
|
| 2016 |
Manga P, Klingeman DM, Lu TY, Mehlhorn TL, Pelletier DA, Hauser LJ, Wilson CM, Brown SD. Replicates, Read Numbers, and Other Important Experimental Design Considerations for Microbial RNA-seq Identified Using Bacillus thuringiensis Datasets. Frontiers in Microbiology. 7: 794. PMID 27303383 DOI: 10.3389/Fmicb.2016.00794 |
0.351 |
|
| 2016 |
Timm CM, Pelletier DA, Jawdy SS, Gunter LE, Henning JA, Engle N, Aufrecht J, Gee E, Nookaew I, Yang Z, Lu TY, Tschaplinski TJ, Doktycz MJ, Tuskan GA, Weston DJ. Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System. Frontiers in Plant Science. 7: 497. PMID 27200001 DOI: 10.3389/Fpls.2016.00497 |
0.398 |
|
| 2016 |
Bible AN, Fletcher SJ, Pelletier DA, Schadt CW, Jawdy SS, Weston DJ, Engle NL, Tschaplinski T, Masyuko R, Polisetti S, Bohn PW, Coutinho TA, Doktycz MJ, Morrell-Falvey JL. A Carotenoid-Deficient Mutant in Pantoea sp. YR343, a Bacteria Isolated from the Rhizosphere of Populus deltoides, Is Defective in Root Colonization. Frontiers in Microbiology. 7: 491. PMID 27148182 DOI: 10.3389/Fmicb.2016.00491 |
0.359 |
|
| 2015 |
Klingeman DM, Utturkar S, Lu TY, Schadt CW, Pelletier DA, Brown SD. Draft Genome Sequences of Four Streptomyces Isolates from the Populus trichocarpa Root Endosphere and Rhizosphere. Genome Announcements. 3. PMID 26564053 DOI: 10.1128/Genomea.01344-15 |
0.448 |
|
| 2015 |
Timm CM, Campbell AG, Utturkar SM, Jun SR, Parales RE, Tan WA, Robeson MS, Lu TY, Jawdy S, Brown SD, Ussery DW, Schadt CW, Tuskan GA, Doktycz MJ, Weston DJ, ... Pelletier DA, et al. Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment. Frontiers in Microbiology. 6: 1118. PMID 26528266 DOI: 10.3389/Fmicb.2015.01118 |
0.678 |
|
| 2015 |
Jun SR, Wassenaar TM, Nookaew I, Hauser L, Wanchai V, Land M, Timm C, Lu TS, Schadt CW, Doktycz MJ, Pelletier DA, Ussery DW. Comparative genome analysis of Pseudomonas genomes including Populus-associated isolates. Applied and Environmental Microbiology. PMID 26519390 DOI: 10.1128/Aem.02612-15 |
0.478 |
|
| 2015 |
Allen MS, Hurst GB, Lu TY, Perry LM, Pan C, Lankford PK, Pelletier DA. Rhodopseudomonas palustris CGA010 Proteome Implicates Extracytoplasmic Function Sigma Factor in Stress Response. Journal of Proteome Research. 14: 2158-68. PMID 25853567 DOI: 10.1021/Pr5012558 |
0.405 |
|
| 2014 |
Labbé JL, Weston DJ, Dunkirk N, Pelletier DA, Tuskan GA. Newly identified helper bacteria stimulate ectomycorrhizal formation in Populus. Frontiers in Plant Science. 5: 579. PMID 25386184 DOI: 10.3389/Fpls.2014.00579 |
0.327 |
|
| 2014 |
Utturkar SM, Klingeman DM, Land ML, Schadt CW, Doktycz MJ, Pelletier DA, Brown SD. Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences. Bioinformatics (Oxford, England). 30: 2709-16. PMID 24930142 DOI: 10.1093/Bioinformatics/Btu391 |
0.357 |
|
| 2013 |
Schaefer AL, Lappala CR, Morlen RP, Pelletier DA, Lu TY, Lankford PK, Harwood CS, Greenberg EP. LuxR- and luxI-type quorum-sensing circuits are prevalent in members of the Populus deltoides microbiome. Applied and Environmental Microbiology. 79: 5745-52. PMID 23851092 DOI: 10.1128/Aem.01417-13 |
0.649 |
|
| 2012 |
Brown SD, Utturkar SM, Klingeman DM, Johnson CM, Martin SL, Land ML, Lu TY, Schadt CW, Doktycz MJ, Pelletier DA. Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides. Journal of Bacteriology. 194: 5991-3. PMID 23045501 DOI: 10.1128/Jb.01243-12 |
0.422 |
|
| 2012 |
Brown SD, Klingeman DM, Lu TY, Johnson CM, Utturkar SM, Land ML, Schadt CW, Doktycz MJ, Pelletier DA. Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides. Journal of Bacteriology. 194: 2383-4. PMID 22493196 DOI: 10.1128/Jb.00198-12 |
0.405 |
|
| 2012 |
Crosby HA, Pelletier DA, Hurst GB, Escalante-Semerena JC. System-wide studies of N-lysine acetylation in Rhodopseudomonas palustris reveal substrate specificity of protein acetyltransferases. The Journal of Biological Chemistry. 287: 15590-601. PMID 22416131 DOI: 10.1074/Jbc.M112.352104 |
0.347 |
|
| 2012 |
Weston DJ, Pelletier DA, Morrell-Falvey JL, Tschaplinski TJ, Jawdy SS, Lu TY, Allen SM, Melton SJ, Martin MZ, Schadt CW, Karve AA, Chen JG, Yang X, Doktycz MJ, Tuskan GA. Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism, photosynthesis, and fitness. Molecular Plant-Microbe Interactions : Mpmi. 25: 765-78. PMID 22375709 DOI: 10.1094/Mpmi-09-11-0253 |
0.42 |
|
| 2011 |
Gottel NR, Castro HF, Kerley M, Yang Z, Pelletier DA, Podar M, Karpinets T, Uberbacher E, Tuskan GA, Vilgalys R, Doktycz MJ, Schadt CW. Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types. Applied and Environmental Microbiology. 77: 5934-44. PMID 21764952 DOI: 10.1128/Aem.05255-11 |
0.368 |
|
| 2010 |
Pelletier DA, Suresh AK, Holton GA, McKeown CK, Wang W, Gu B, Mortensen NP, Allison DP, Joy DC, Allison MR, Brown SD, Phelps TJ, Doktycz MJ. Effects of engineered cerium oxide nanoparticles on bacterial growth and viability. Applied and Environmental Microbiology. 76: 7981-9. PMID 20952651 DOI: 10.1128/Aem.00650-10 |
0.314 |
|
| 2010 |
Yang S, Land ML, Klingeman DM, Pelletier DA, Lu TY, Martin SL, Guo HB, Smith JC, Brown SD. Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 107: 10395-400. PMID 20484677 DOI: 10.1073/Pnas.0914506107 |
0.379 |
|
| 2010 |
Yang S, Pelletier DA, Lu TY, Brown SD. The Zymomonas mobilis regulator hfq contributes to tolerance against multiple lignocellulosic pretreatment inhibitors. Bmc Microbiology. 10: 135. PMID 20459639 DOI: 10.1186/1471-2180-10-135 |
0.341 |
|
| 2009 |
Yang S, Pappas KM, Hauser LJ, Land ML, Chen GL, Hurst GB, Pan C, Kouvelis VN, Typas MA, Pelletier DA, Klingeman DM, Chang YJ, Samatova NF, Brown SD. Improved genome annotation for Zymomonas mobilis. Nature Biotechnology. 27: 893-4. PMID 19816441 DOI: 10.1038/Nbt1009-893 |
0.343 |
|
| 2009 |
Kalluri UC, Hurst GB, Lankford PK, Ranjan P, Pelletier DA. Shotgun proteome profile of Populus developing xylem. Proteomics. 9: 4871-80. PMID 19743414 DOI: 10.1002/Pmic.200800854 |
0.39 |
|
| 2009 |
Edwards AN, Fowlkes JD, Owens ET, Standaert RF, Pelletier DA, Hurst GB, Doktycz MJ, Morrell-Falvey JL. An in vivo imaging-based assay for detecting protein interactions over a wide range of binding affinities. Analytical Biochemistry. 395: 166-77. PMID 19698693 DOI: 10.1016/J.Ab.2009.08.015 |
0.301 |
|
| 2009 |
Hervey WJ, Khalsa-Moyers G, Lankford PK, Owens ET, McKeown CK, Lu TY, Foote LJ, Asano KG, Morrell-Falvey JL, McDonald WH, Pelletier DA, Hurst GB. Evaluation of affinity-tagged protein expression strategies using local and global isotope ratio measurements. Journal of Proteome Research. 8: 3675-88. PMID 19459691 DOI: 10.1021/Pr801088F |
0.361 |
|
| 2009 |
Joshi GS, Romagnoli S, Verberkmoes NC, Hettich RL, Pelletier D, Tabita FR. Differential accumulation of form I RubisCO in Rhodopseudomonas palustris CGA010 under Photoheterotrophic growth conditions with reduced carbon sources. Journal of Bacteriology. 191: 4243-50. PMID 19376869 DOI: 10.1128/Jb.01795-08 |
0.337 |
|
| 2009 |
Karpinets TV, Pelletier DA, Pan C, Uberbacher EC, Melnichenko GV, Hettich RL, Samatova NF. Phenotype fingerprinting suggests the involvement of single-genotype consortia in degradation of aromatic compounds by Rhodopseudomonas palustris. Plos One. 4: e4615. PMID 19242537 DOI: 10.1371/Journal.Pone.0004615 |
0.428 |
|
| 2008 |
Oda Y, Larimer FW, Chain PS, Malfatti S, Shin MV, Vergez LM, Hauser L, Land ML, Braatsch S, Beatty JT, Pelletier DA, Schaefer AL, Harwood CS. Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments. Proceedings of the National Academy of Sciences of the United States of America. 105: 18543-8. PMID 19020098 DOI: 10.1073/Pnas.0809160105 |
0.66 |
|
| 2008 |
Pelletier DA, Hurst GB, Foote LJ, Lankford PK, McKeown CK, Lu TY, Schmoyer DD, Shah MB, Hervey WJ, McDonald WH, Hooker BS, Cannon WR, Daly DS, Gilmore JM, Wiley HS, et al. A general system for studying protein-protein interactions in Gram-negative bacteria. Journal of Proteome Research. 7: 3319-28. PMID 18590317 DOI: 10.1021/Pr8001832 |
0.348 |
|
| 2008 |
Parales RE, Parales JV, Pelletier DA, Ditty JL. Chapter 1 Diversity of Microbial Toluene Degradation Pathways Advances in Applied Microbiology. 64: 1-73. PMID 18485280 DOI: 10.1016/S0065-2164(08)00401-2 |
0.58 |
|
| 2008 |
Pan C, Oda Y, Lankford PK, Zhang B, Samatova NF, Pelletier DA, Harwood CS, Hettich RL. Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris by integrating transcriptomics and quantitative proteomics. Molecular & Cellular Proteomics : McP. 7: 938-48. PMID 18156135 DOI: 10.1074/Mcp.M700147-Mcp200 |
0.605 |
|
| 2006 |
Connelly HM, Pelletier DA, Lu TY, Lankford PK, Hettich RL. Characterization of pII family (GlnK1, GlnK2, and GlnB) protein uridylylation in response to nitrogen availability for Rhodopseudomonas palustris. Analytical Biochemistry. 357: 93-104. PMID 16860774 DOI: 10.1016/J.Ab.2006.05.038 |
0.373 |
|
| 2006 |
VerBerkmoes NC, Shah MB, Lankford PK, Pelletier DA, Strader MB, Tabb DL, McDonald WH, Barton JW, Hurst GB, Hauser L, Davison BH, Beatty JT, Harwood CS, Tabita FR, Hettich RL, et al. Determination and comparison of the baseline proteomes of the versatile microbe Rhodopseudomonas palustris under its major metabolic states. Journal of Proteome Research. 5: 287-98. PMID 16457594 DOI: 10.1021/Pr0503230 |
0.614 |
|
| 2004 |
Thormann KM, Saville RM, Shukla S, Pelletier DA, Spormann AM. Initial Phases of biofilm formation in Shewanella oneidensis MR-1. Journal of Bacteriology. 186: 8096-104. PMID 15547283 DOI: 10.1128/Jb.186.23.8096-8104.2004 |
0.301 |
|
| 2004 |
Strader MB, Verberkmoes NC, Tabb DL, Connelly HM, Barton JW, Bruce BD, Pelletier DA, Davison BH, Hettich RL, Larimer FW, Hurst GB. Characterization of the 70S Ribosome from Rhodopseudomonas palustris using an integrated "top-down" and "bottom-up" mass spectrometric approach. Journal of Proteome Research. 3: 965-78. PMID 15473684 DOI: 10.1021/Pr049940Z |
0.323 |
|
| 2004 |
Larimer FW, Chain P, Hauser L, Lamerdin J, Malfatti S, Do L, Land ML, Pelletier DA, Beatty JT, Lang AS, Tabita FR, Gibson JL, Hanson TE, Bobst C, Torres JL, et al. Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris. Nature Biotechnology. 22: 55-61. PMID 14704707 DOI: 10.1038/Nbt923 |
0.656 |
|
| 2001 |
Johnson HA, Pelletier DA, Spormann AM. Isolation and characterization of anaerobic ethylbenzene dehydrogenase, a novel Mo-Fe-S enzyme. Journal of Bacteriology. 183: 4536-42. PMID 11443088 DOI: 10.1128/Jb.183.15.4536-4542.2001 |
0.331 |
|
| 2000 |
Pelletier DA, Harwood CS. 2-Hydroxycyclohexanecarboxyl coenzyme A dehydrogenase, an enzyme characteristic of the anaerobic benzoate degradation pathway used by Rhodopseudomonas palustris. Journal of Bacteriology. 182: 2753-60. PMID 10781543 DOI: 10.1128/Jb.182.10.2753-2760.2000 |
0.616 |
|
| 1998 |
Pelletier DA, Harwood CS. 2-Ketocyclohexanecarboxyl coenzyme A hydrolase, the ring cleavage enzyme required for anaerobic benzoate degradation by Rhodopseudomonas palustris. Journal of Bacteriology. 180: 2330-6. PMID 9573182 DOI: 10.1128/Jb.180.9.2330-2336.1998 |
0.611 |
|
| 1997 |
Egland PG, Pelletier DA, Dispensa M, Gibson J, Harwood CS. A cluster of bacterial genes for anaerobic benzene ring biodegradation. Proceedings of the National Academy of Sciences of the United States of America. 94: 6484-9. PMID 9177244 DOI: 10.1073/Pnas.94.12.6484 |
0.631 |
|
| 1991 |
Weisburg WG, Barns SM, Pelletier DA, Lane DJ. 16S ribosomal DNA amplification for phylogenetic study Journal of Bacteriology. 173: 697-703. PMID 1987160 DOI: 10.1128/Jb.173.2.697-703.1991 |
0.337 |
|
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