Philip R. Gafken, Ph.D. - Publications

2000 Oregon State University, Corvallis, OR 
Biochemistry, Analytical Chemistry

27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Zhu P, Gafken PR, Mehl RA, Cooley RB. A Highly Versatile Expression System for the Production of Multiply Phosphorylated Proteins. Acs Chemical Biology. PMID 31243963 DOI: 10.1021/Acschembio.9B00307  0.48
2019 Jagannathan S, Ogata Y, Gafken PR, Tapscott SJ, Bradley RK. Quantitative proteomics reveals key roles for post-transcriptional gene regulation in the molecular pathology of FSHD. Elife. 8. PMID 30644821 DOI: 10.7554/Elife.41740  0.334
2018 Blair KM, Mears KS, Taylor JA, Fero J, Jones LA, Gafken PR, Whitney JC, Salama NR. The Helicobacter pylori cell shape promoting protein Csd5 interacts with the cell wall, MurF, and the bacterial cytoskeleton. Molecular Microbiology. PMID 30039535 DOI: 10.1111/Mmi.14087  0.384
2014 Vogel WK, Gafken PR, Leid M, Filtz TM. Kinetic analysis of BCL11B multisite phosphorylation-dephosphorylation and coupled sumoylation in primary thymocytes by multiple reaction monitoring mass spectroscopy. Journal of Proteome Research. 13: 5860-8. PMID 25423098 DOI: 10.1021/Pr5007697  0.306
2014 Thayer NH, Leverich CK, Fitzgibbon MP, Nelson ZW, Henderson KA, Gafken PR, Hsu JJ, Gottschling DE. Identification of long-lived proteins retained in cells undergoing repeated asymmetric divisions. Proceedings of the National Academy of Sciences of the United States of America. 111: 14019-26. PMID 25228775 DOI: 10.1073/Pnas.1416079111  0.374
2014 Zielke RA, Gafken PR, Sikora AE. Quantitative proteomic analysis of the cell envelopes and native membrane vesicles derived from gram-negative bacteria. Current Protocols in Microbiology. 34: 1F.3.1-16. PMID 25082006 DOI: 10.1002/9780471729259.Mc01F03S34  0.436
2014 Bajaj G, Hau AM, Hsu P, Gafken PR, Schimerlik MI, Ishmael JE. Identification of an atypical calcium-dependent calmodulin binding site on the C-terminal domain of GluN2A. Biochemical and Biophysical Research Communications. 444: 588-94. PMID 24491550 DOI: 10.1016/J.Bbrc.2014.01.111  0.345
2014 Flood-Nichols SK, Kazanjian AA, Tinnemore D, Gafken PR, Ogata Y, Napolitano PG, Stallings JD, Ippolito DL. Aberrant glycosylation of plasma proteins in severe preeclampsia promotes monocyte adhesion. Reproductive Sciences (Thousand Oaks, Calif.). 21: 204-14. PMID 23757314 DOI: 10.1177/1933719113492210  0.301
2013 Jones KA, Kim PD, Patel BB, Kelsen SG, Braverman A, Swinton DJ, Gafken PR, Jones LA, Lane WS, Neveu JM, Leung HC, Shaffer SA, Leszyk JD, Stanley BA, Fox TE, et al. Immunodepletion plasma proteomics by tripleTOF 5600 and Orbitrap elite/LTQ-Orbitrap Velos/Q exactive mass spectrometers. Journal of Proteome Research. 12: 4351-65. PMID 24004147 DOI: 10.1021/Pr400307U  0.421
2012 Pan S, Chen R, Brand RE, Hawley S, Tamura Y, Gafken PR, Milless BP, Goodlett DR, Rush J, Brentnall TA. Multiplex targeted proteomic assay for biomarker detection in plasma: a pancreatic cancer biomarker case study. Journal of Proteome Research. 11: 1937-48. PMID 22316387 DOI: 10.1021/Pr201117W  0.362
2012 Pan S, Chen R, Brand R, Hawley S, Tamura Y, Gafken P, Milless B, Goodlett D, Rush J, Brentnall T. Abstract 4798: Pilot study of plasma biomarker candidates for pancreatic cancer detection - a targeted proteomics approach Cancer Research. 72: 4798-4798. DOI: 10.1158/1538-7445.Am2012-4798  0.342
2011 Whiteaker JR, Lin C, Kennedy J, Hou L, Trute M, Sokal I, Yan P, Schoenherr RM, Zhao L, Voytovich UJ, Kelly-Spratt KS, Krasnoselsky A, Gafken PR, Hogan JM, Jones LA, et al. A targeted proteomics-based pipeline for verification of biomarkers in plasma. Nature Biotechnology. 29: 625-34. PMID 21685906 DOI: 10.1038/Nbt.1900  0.377
2011 Thompson S, Pearson AN, Ashley MD, Jessick V, Murphy BM, Gafken P, Henshall DC, Morris KT, Simon RP, Meller R. Identification of a novel Bcl-2-interacting mediator of cell death (Bim) E3 ligase, tripartite motif-containing protein 2 (TRIM2), and its role in rapid ischemic tolerance-induced neuroprotection Journal of Biological Chemistry. 286: 19331-19339. PMID 21478148 DOI: 10.1074/Jbc.M110.197707  0.404
2010 Morrish F, Noonan J, Perez-Olsen C, Gafken PR, Fitzgibbon M, Kelleher J, VanGilst M, Hockenbery D. Myc-dependent mitochondrial generation of acetyl-CoA contributes to fatty acid biosynthesis and histone acetylation during cell cycle entry. The Journal of Biological Chemistry. 285: 36267-74. PMID 20813845 DOI: 10.1074/Jbc.M110.141606  0.313
2009 Gafken PR. An overview of the qualitative analysis of phosphoproteins by mass spectrometry. Methods in Molecular Biology (Clifton, N.J.). 527: 159-72, ix. PMID 19241012 DOI: 10.1007/978-1-60327-834-8_12  0.483
2009 Zhang LJ, Liu X, Gafken PR, Kioussi C, Leid M. A chicken ovalbumin upstream promoter transcription factor I (COUP-TFI) complex represses expression of the gene encoding tumor necrosis factor alpha-induced protein 8 (TNFAIP8). The Journal of Biological Chemistry. 284: 6156-68. PMID 19112178 DOI: 10.1074/Jbc.M807713200  0.416
2008 Meller R, Thompson SJ, Lusardi TA, Ordonez AN, Ashley MD, Jessick V, Wang W, Torrey DJ, Henshall DC, Gafken PR, Saugstad JA, Xiong ZG, Simon RP. Ubiquitin proteasome-mediated synaptic reorganization: a novel mechanism underlying rapid ischemic tolerance. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 50-9. PMID 18171922 DOI: 10.1523/Jneurosci.3474-07.2008  0.308
2008 Klimek J, Eddes JS, Hohmann L, Jackson J, Peterson A, Letarte S, Gafken PR, Katz JE, Mallick P, Lee H, Schmidt A, Ossola R, Eng JK, Aebersold R, Martin DB. The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools. Journal of Proteome Research. 7: 96-103. PMID 17711323 DOI: 10.1021/Pr070244J  0.422
2007 Gafken PR, Doneanu CE, Bennett SE, Barofsky DF. Comparison of ESI-MS interfaces for the analysis of UV-crosslinked peptide-nucleic acid complexes. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 860: 145-52. PMID 18042442 DOI: 10.1016/J.Jchromb.2007.09.029  0.681
2007 Katzenellenbogen RA, Egelkrout EM, Vliet-Gregg P, Gewin LC, Gafken PR, Galloway DA. NFX1-123 and poly(A) binding proteins synergistically augment activation of telomerase in human papillomavirus type 16 E6-expressing cells. Journal of Virology. 81: 3786-96. PMID 17267499 DOI: 10.1128/Jvi.02007-06  0.308
2006 Gafken PR, Lampe PD. Methodologies for characterizing phosphoproteins by mass spectrometry. Cell Communication & Adhesion. 13: 249-62. PMID 17162667 DOI: 10.1080/15419060601077917  0.475
2006 Sundararajan N, Mao D, Chan S, Koo TW, Su X, Sun L, Zhang J, Sung KB, Yamakawa M, Gafken PR, Randolph T, McLerran D, Feng Z, Berlin AA, Roth MB. Ultrasensitive detection and characterization of posttranslational modifications using surface-enhanced Raman spectroscopy. Analytical Chemistry. 78: 3543-50. PMID 16737206 DOI: 10.1021/Ac051525I  0.38
2005 Mitchell BL, Yasui Y, Lampe JW, Gafken PR, Lampe PD. Evaluation of matrix-assisted laser desorption/ionization-time of flight mass spectrometry proteomic profiling: identification of alpha 2-HS glycoprotein B-chain as a biomarker of diet. Proteomics. 5: 2238-46. PMID 15841498 DOI: 10.1002/Pmic.200401099  0.374
2004 Doneanu CE, Gafken PR, Bennett SE, Barofsky DF. Mass spectrometry of UV-cross-linked protein-nucleic acid complexes: identification of amino acid residues in the single-stranded DNA-binding domain of human replication protein A. Analytical Chemistry. 76: 5667-76. PMID 15456284 DOI: 10.1021/Ac049547C  0.705
2004 Farr CD, Gafken PR, Norbeck AD, Doneanu CE, Stapels MD, Barofsky DF, Minami M, Saugstad JA. Proteomic analysis of native metabotropic glutamate receptor 5 protein complexes reveals novel molecular constituents. Journal of Neurochemistry. 91: 438-50. PMID 15447677 DOI: 10.1111/J.1471-4159.2004.02735.X  0.618
2003 Smith CM, Gafken PR, Zhang Z, Gottschling DE, Smith JB, Smith DL. Mass spectrometric quantification of acetylation at specific lysines within the amino-terminal tail of histone H4. Analytical Biochemistry. 316: 23-33. PMID 12694723 DOI: 10.1016/S0003-2697(03)00032-0  0.419
2002 Doneanu CE, Gafken PR, Barofsky DF. Mass spectrometric analysis of UV-crosslinked protein-nucleic acid complexes: Identification of amino acid residues in the single-stranded dna binding domain of human replication protein a Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 467-468.  0.715
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