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Adrian K. Arakaki - Publications

Affiliations: 
Center for the Study of Systems Biology Georgia Institute of Technology, Atlanta, GA 
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11 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2010 Pandit SB, Brylinski M, Zhou H, Gao M, Arakaki AK, Skolnick J. PSiFR: an integrated resource for prediction of protein structure and function. Bioinformatics (Oxford, England). 26: 687-8. PMID 20080513 DOI: 10.1093/Bioinformatics/Btq006  0.427
2009 Skolnick J, Arakaki AK, Lee SY, Brylinski M. The continuity of protein structure space is an intrinsic property of proteins. Proceedings of the National Academy of Sciences of the United States of America. 106: 15690-5. PMID 19805219 DOI: 10.1073/Pnas.0907683106  0.373
2009 Arakaki AK, Huang Y, Skolnick J. EFICAz2: enzyme function inference by a combined approach enhanced by machine learning. Bmc Bioinformatics. 10: 107. PMID 19361344 DOI: 10.1186/1471-2105-10-107  0.32
2006 Arakaki AK, Tian W, Skolnick J. High precision multi-genome scale reannotation of enzyme function by EFICAz. Bmc Genomics. 7: 315. PMID 17166279 DOI: 10.1186/1471-2164-7-315  0.327
2006 Zhang Y, Hubner IA, Arakaki AK, Shakhnovich E, Skolnick J. On the origin and highly likely completeness of single-domain protein structures. Proceedings of the National Academy of Sciences of the United States of America. 103: 2605-10. PMID 16478803 DOI: 10.1073/Pnas.0509379103  0.383
2005 Szilágyi A, Grimm V, Arakaki AK, Skolnick J. Prediction of physical protein-protein interactions. Physical Biology. 2: S1-16. PMID 16204844 DOI: 10.1088/1478-3975/2/2/S01  0.375
2005 Zhang Y, Arakaki AK, Skolnick J. TASSER: an automated method for the prediction of protein tertiary structures in CASP6. Proteins. 61: 91-8. PMID 16187349 DOI: 10.1002/Prot.20724  0.342
2004 Tian W, Arakaki AK, Skolnick J. EFICAz: a comprehensive approach for accurate genome-scale enzyme function inference. Nucleic Acids Research. 32: 6226-39. PMID 15576349 DOI: 10.1093/Nar/Gkh956  0.339
2004 Arakaki AK, Zhang Y, Skolnick J. Large-scale assessment of the utility of low-resolution protein structures for biochemical function assignment. Bioinformatics (Oxford, England). 20: 1087-96. PMID 14764543 DOI: 10.1093/Bioinformatics/Bth044  0.393
2003 Skolnick J, Zhang Y, Arakaki AK, Kolinski A, Boniecki M, Szilágyi A, Kihara D. TOUCHSTONE: a unified approach to protein structure prediction. Proteins. 53: 469-79. PMID 14579335 DOI: 10.1002/Prot.10551  0.356
2003 Lu L, Arakaki AK, Lu H, Skolnick J. Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome. Genome Research. 13: 1146-54. PMID 12799350 DOI: 10.1101/Gr.1145203  0.413
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