Bart C. Weimer - Publications

Utah State University, Logan, UT, United States 
Microbiology Biology, Biochemistry

64 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Beck KL, Haiminen N, Chambliss D, Edlund S, Kunitomi M, Huang BC, Kong N, Ganesan B, Baker R, Markwell P, Kawas B, Davis M, Prill RJ, Krishnareddy H, Seabolt E, ... ... Weimer BC, et al. Monitoring the microbiome for food safety and quality using deep shotgun sequencing. Npj Science of Food. 5: 3. PMID 33558514 DOI: 10.1038/s41538-020-00083-y  0.96
2019 Haiminen N, Edlund S, Chambliss D, Kunitomi M, Weimer BC, Ganesan B, Baker R, Markwell P, Davis M, Huang BC, Kong N, Prill RJ, Marlowe CH, Quintanar A, Pierre S, et al. Food authentication from shotgun sequencing reads with an application on high protein powders. Npj Science of Food. 3: 24. PMID 33772018 DOI: 10.1038/s41538-019-0056-6  0.96
2019 Haiminen N, Edlund S, Chambliss D, Kunitomi M, Weimer BC, Ganesan B, Baker R, Markwell P, Davis M, Huang BC, Kong N, Prill RJ, Marlowe CH, Quintanar A, Pierre S, et al. Food authentication from shotgun sequencing reads with an application on high protein powders. Npj Science of Food. 3: 24. PMID 31754632 DOI: 10.1038/s41538-019-0056-6  0.96
2018 Weimer BC, Chen P, Desai PT, Chen D, Shah J. Whole Cell Cross-Linking to Discover Host-Microbe Protein Cognate Receptor/Ligand Pairs. Frontiers in Microbiology. 9: 1585. PMID 30072965 DOI: 10.3389/Fmicb.2018.01585  0.48
2017 Chen P, Reiter T, Huang B, Kong N, Weimer BC. Prebiotic Oligosaccharides Potentiate Host Protective Responses against L. Monocytogenes Infection. Pathogens (Basel, Switzerland). 6. PMID 29257110 DOI: 10.3390/Pathogens6040068  0.48
2017 Stevens JR, Jones TR, Lefevre M, Ganesan B, Weimer BC. SigTree: A Microbial Community Analysis Tool to Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree. Computational and Structural Biotechnology Journal. 15: 372-378. PMID 28748045 DOI: 10.1016/J.Csbj.2017.06.002  0.96
2017 Kong N, Davis M, Arabyan N, Huang BC, Weis AM, Chen P, Thao K, Ng W, Chin N, Foutouhi S, Foutouhi A, Kaufman J, Xie Y, Storey DB, Weimer BC. Draft Genome Sequences of 1,183 Salmonella Strains from the 100K Pathogen Genome Project. Genome Announcements. 5. PMID 28705963 DOI: 10.1128/Genomea.00518-17  0.48
2017 Weis AM, Gilpin B, Huang BC, Kong N, Chen P, Weimer BC. Shigella Draft Genome Sequences: Resources for Food Safety and Public Health. Genome Announcements. 5. PMID 28428292 DOI: 10.1128/Genomea.00176-17  0.48
2017 Chen P, Kong N, Huang B, Thao K, Ng W, Storey DB, Arabyan N, Foutouhi A, Foutouhi S, Weimer BC. 100K Pathogen Genome Project: 306 Listeria Draft Genome Sequences for Food Safety and Public Health. Genome Announcements. 5. PMID 28183778 DOI: 10.1128/Genomea.00967-16  0.48
2017 Weis AM, Huang BC, Storey DB, Kong N, Chen P, Arabyan N, Gilpin B, Mason C, Townsend AK, Smith WA, Byrne BA, Taff CC, Weimer BC. Large-Scale Release of Campylobacter Draft Genomes: Resources for Food Safety and Public Health from the 100K Pathogen Genome Project. Genome Announcements. 5. PMID 28057746 DOI: 10.1128/Genomea.00925-16  0.48
2016 Chen P, den Bakker HC, Korlach J, Kong N, Storey DB, Paxinos EE, Ashby M, Clark T, Luong K, Wiedmann M, Weimer BC. Comparative Genomics Reveal the Diversity of Restriction Methylation Systems in Listeria monocytogenes. Applied and Environmental Microbiology. PMID 27836852 DOI: 10.1128/Aem.02091-16  0.48
2016 Arabyan N, Park D, Foutouhi S, Weis AM, Huang BC, Williams CC, Desai P, Shah J, Jeannotte R, Kong N, Lebrilla CB, Weimer BC. Salmonella Degrades the Host Glycocalyx Leading to Altered Infection and Glycan Remodeling. Scientific Reports. 6: 29525. PMID 27389966 DOI: 10.1038/Srep29525  0.64
2015 Dhanasekaran AR, Pearson JL, Ganesan B, Weimer BC. Metabolome searcher: a high throughput tool for metabolite identification and metabolic pathway mapping directly from mass spectrometry and using genome restriction. Bmc Bioinformatics. 16: 62. PMID 25887958 DOI: 10.1186/S12859-015-0462-Y  0.64
2015 Worden N, Wilkop TE, Esteve VE, Jeannotte R, Lathe R, Vernhettes S, Weimer B, Hicks G, Alonso J, Labavitch J, Persson S, Ehrhardt D, Drakakaki G. CESA TRAFFICKING INHIBITOR inhibits cellulose deposition and interferes with the trafficking of cellulose synthase complexes and their associated proteins KORRIGAN1 and POM2/CELLULOSE SYNTHASE INTERACTIVE PROTEIN1. Plant Physiology. 167: 381-93. PMID 25535279 DOI: 10.1104/Pp.114.249003  0.64
2015 Pandey P, Lejeune M, Biswas S, Morash D, Weimer B, Young G. A new method for converting foodwaste into pathogen free soil amendment for enhancing agricultural sustainability Journal of Cleaner Production. DOI: 10.1016/J.Jclepro.2015.09.045  0.64
2014 Ferreyra JA, Wu KJ, Hryckowian AJ, Bouley DM, Weimer BC, Sonnenburg JL. Gut microbiota-produced succinate promotes C. difficile infection after antibiotic treatment or motility disturbance. Cell Host & Microbe. 16: 770-7. PMID 25498344 DOI: 10.1016/J.Chom.2014.11.003  0.64
2014 Shah J, Desai PT, Weimer BC. Genetic mechanisms underlying the pathogenicity of cold-stressed Salmonella enterica serovar typhimurium in cultured intestinal epithelial cells. Applied and Environmental Microbiology. 80: 6943-53. PMID 25192993 DOI: 10.1128/Aem.01994-14  0.48
2014 Deng X, Desai PT, den Bakker HC, Mikoleit M, Tolar B, Trees E, Hendriksen RS, Frye JG, Porwollik S, Weimer BC, Wiedmann M, Weinstock GM, Fields PI, McClelland M. Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages. Emerging Infectious Diseases. 20: 1481-9. PMID 25147968 DOI: 10.3201/Eid2009.131095  0.64
2014 Ganesan B, Weimer BC, Pinzon J, Dao Kong N, Rompato G, Brothersen C, McMahon DJ. Probiotic bacteria survive in Cheddar cheese and modify populations of other lactic acid bacteria. Journal of Applied Microbiology. 116: 1642-56. PMID 24905221 DOI: 10.1111/Jam.12482  0.96
2014 Kol A, Foutouhi S, Walker NJ, Kong NT, Weimer BC, Borjesson DL. Gastrointestinal microbes interact with canine adipose-derived mesenchymal stem cells in vitro and enhance immunomodulatory functions. Stem Cells and Development. 23: 1831-43. PMID 24803072 DOI: 10.1089/Scd.2014.0128  0.64
2014 Chen P, Jeannotte R, Weimer BC. Exploring bacterial epigenomics in the next-generation sequencing era: a new approach for an emerging frontier. Trends in Microbiology. 22: 292-300. PMID 24725482 DOI: 10.1016/J.Tim.2014.03.005  0.48
2014 Forquin-Gomez MP, Weimer BC, Sorieul L, Kalinowski J, Vallaeys T. The family Brevibacteriaceae The Prokaryotes: Actinobacteria. 141-153. DOI: 10.1007/978-3-642-30138-4_169  0.64
2013 He X, Mishchuk DO, Shah J, Weimer BC, Slupsky CM. Cross-talk between E. coli strains and a human colorectal adenocarcinoma-derived cell line. Scientific Reports. 3: 3416. PMID 24301462 DOI: 10.1038/Srep03416  0.48
2013 Riehle C, Wende AR, Sena S, Pires KM, Pereira RO, Zhu Y, Bugger H, Frank D, Bevins J, Chen D, Perry CN, Dong XC, Valdez S, Rech M, Sheng X, ... Weimer BC, et al. Insulin receptor substrate signaling suppresses neonatal autophagy in the heart. The Journal of Clinical Investigation. 123: 5319-33. PMID 24177427 DOI: 10.1172/Jci71171  0.64
2013 Shah J, Desai PT, Chen D, Stevens JR, Weimer BC. Preadaptation to cold stress in Salmonella enterica serovar Typhimurium increases survival during subsequent acid stress exposure. Applied and Environmental Microbiology. 79: 7281-9. PMID 24056458 DOI: 10.1128/Aem.02621-13  0.64
2013 Ng KM, Ferreyra JA, Higginbottom SK, Lynch JB, Kashyap PC, Gopinath S, Naidu N, Choudhury B, Weimer BC, Monack DM, Sonnenburg JL. Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens. Nature. 502: 96-9. PMID 23995682 DOI: 10.1038/Nature12503  0.64
2013 Maga EA, Weimer BC, Murray JD. Dissecting the role of milk components on gut microbiota composition. Gut Microbes. 4: 136-9. PMID 23235404 DOI: 10.4161/Gmic.23188  0.64
2012 Maga EA, Desai PT, Weimer BC, Dao N, Kültz D, Murray JD. Consumption of lysozyme-rich milk can alter microbial fecal populations. Applied and Environmental Microbiology. 78: 6153-60. PMID 22752159 DOI: 10.1128/Aem.00956-12  0.48
2012 Heithoff DM, Shimp WR, House JK, Xie Y, Weimer BC, Sinsheimer RL, Mahan MJ. Intraspecies variation in the emergence of hyperinfectious bacterial strains in nature. Plos Pathogens. 8: e1002647. PMID 22511871 DOI: 10.1371/Journal.Ppat.1002647  0.64
2012 Bugger H, Riehle C, Jaishy B, Wende AR, Tuinei J, Chen D, Soto J, Pires KM, Boudina S, Theobald HA, Luptak I, Wayment B, Wang X, Litwin SE, Weimer BC, et al. Genetic loss of insulin receptors worsens cardiac efficiency in diabetes. Journal of Molecular and Cellular Cardiology. 52: 1019-26. PMID 22342406 DOI: 10.1016/J.Yjmcc.2012.02.001  0.48
2012 Barboza M, Pinzon J, Wickramasinghe S, Froehlich JW, Moeller I, Smilowitz JT, Ruhaak LR, Huang J, Lönnerdal B, German JB, Medrano JF, Weimer BC, Lebrilla CB. Glycosylation of human milk lactoferrin exhibits dynamic changes during early lactation enhancing its role in pathogenic bacteria-host interactions. Molecular & Cellular Proteomics : McP. 11: M111.015248. PMID 22261723 DOI: 10.1074/Mcp.M111.015248  0.64
2011 Marcobal A, Barboza M, Sonnenburg ED, Pudlo N, Martens EC, Desai P, Lebrilla CB, Weimer BC, Mills DA, German JB, Sonnenburg JL. Bacteroides in the infant gut consume milk oligosaccharides via mucus-utilization pathways. Cell Host & Microbe. 10: 507-14. PMID 22036470 DOI: 10.1016/J.Chom.2011.10.007  0.64
2011 Parnell JJ, Rompato G, Crowl TA, Weimer BC, Pfrender ME. Phylogenetic distance in Great Salt Lake microbial communities Aquatic Microbial Ecology. 64: 267-273. DOI: 10.3354/Ame01527  0.64
2011 Latta IV LC, Baker M, Crowl T, Parnell JJ, Weimer B, DeWald DB, Pfrender ME. Species and genotype diversity drive community and ecosystem properties in experimental microcosms Evolutionary Ecology. 25: 1107-1125. DOI: 10.1007/S10682-010-9457-3  0.64
2010 Wang J, Zhao B, Zhang W, Wu X, Wang R, Huang Y, Chen D, Park K, Weimer BC, Shen Y. Mycoepoxydiene, a fungal polyketide, induces cell cycle arrest at the G2/M phase and apoptosis in HeLa cells. Bioorganic & Medicinal Chemistry Letters. 20: 7054-8. PMID 20970330 DOI: 10.1016/J.Bmcl.2010.09.105  0.48
2010 Parnell JJ, Rompato G, Latta LC, Pfrender ME, Van Nostrand JD, He Z, Zhou J, Andersen G, Champine P, Ganesan B, Weimer BC. Functional biogeography as evidence of gene transfer in hypersaline microbial communities. Plos One. 5: e12919. PMID 20957119 DOI: 10.1371/Journal.Pone.0012919  0.64
2010 Bugger H, Schwarzer M, Chen D, Schrepper A, Amorim PA, Schoepe M, Nguyen TD, Mohr FW, Khalimonchuk O, Weimer BC, Doenst T. Proteomic remodelling of mitochondrial oxidative pathways in pressure overload-induced heart failure. Cardiovascular Research. 85: 376-84. PMID 19843514 DOI: 10.1093/Cvr/Cvp344  0.48
2009 Tang CT, Lu MK, Guo Y, Wang YN, Peng JY, Wu WB, Li WH, Weimer BC, Chen D. Development of larval Schistosoma japonicum blocked in Oncomelania hupensis by pre-infection with larval Exorchis sp. The Journal of Parasitology. 95: 1321-5. PMID 19663532 DOI: 10.1645/Ge-2055.1  0.48
2009 Bugger H, Chen D, Riehle C, Soto J, Theobald HA, Hu XX, Ganesan B, Weimer BC, Abel ED. Tissue-specific remodeling of the mitochondrial proteome in type 1 diabetic akita mice. Diabetes. 58: 1986-97. PMID 19542201 DOI: 10.2337/Db09-0259  0.96
2009 Parnell JJ, Crowl TA, Weimer BC, Pfrender ME. Biodiversity in microbial communities: system scale patterns and mechanisms. Molecular Ecology. 18: 1455-62. PMID 19298265 DOI: 10.1111/J.1365-294X.2009.04128.X  0.64
2009 Chen D, Peel MD, Olson KC, Weimer BC, Dewald DB. Differential ruminai degradation of alfalfa proteins Canadian Journal of Plant Science. 89: 1065-1074. DOI: 10.4141/Cjps08220  0.64
2008 Zhan Y, Du X, Chen H, Liu J, Zhao B, Huang D, Li G, Xu Q, Zhang M, Weimer BC, Chen D, Cheng Z, Zhang L, Li Q, Li S, et al. Cytosporone B is an agonist for nuclear orphan receptor Nur77. Nature Chemical Biology. 4: 548-56. PMID 18690216 DOI: 10.1038/Nchembio.106  0.48
2008 Lee JH, Karamychev VN, Kozyavkin SA, Mills D, Pavlov AR, Pavlova NV, Polouchine NN, Richardson PM, Shakhova VV, Slesarev AI, Weimer B, O'Sullivan DJ. Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth. Bmc Genomics. 9: 247. PMID 18505588 DOI: 10.1186/1471-2164-9-247  0.64
2008 Desai PT, Walsh MK, Weimer BC. Solid-phase capture of pathogenic bacteria by using gangliosides and detection with real-time PCR. Applied and Environmental Microbiology. 74: 2254-8. PMID 18263751 DOI: 10.1128/Aem.02601-07  0.64
2008 Pate BJ, White KL, Chen D, Aston KI, Sessions BR, Bunch TD, Weimer BC. A novel approach to identify bovine sperm membrane proteins that interact with receptors on the vitelline membrane of bovine oocytes. Molecular Reproduction and Development. 75: 641-9. PMID 17886263 DOI: 10.1002/Mrd.20805  0.48
2007 Champine PJ, Michaelson J, Weimer BC, Welch DR, DeWald DB. Microarray analysis reveals potential mechanisms of BRMS1-mediated metastasis suppression. Clinical & Experimental Metastasis. 24: 551-65. PMID 17896182 DOI: 10.1007/S10585-007-9092-8  0.64
2007 Ganesan B, Stuart MR, Weimer BC. Carbohydrate starvation causes a metabolically active but nonculturable state in Lactococcus lactis. Applied and Environmental Microbiology. 73: 2498-512. PMID 17293521 DOI: 10.1128/Aem.01832-06  0.64
2007 Pate BJ, White KL, Winger QA, Rickords LF, Aston KI, Sessons BR, Li GP, Campbell KD, Weimer B, Bunch TD. Specific integrin subunits in bovine oocytes, including novel sequences for alpha 6 and beta 3 subunits. Molecular Reproduction and Development. 74: 600-7. PMID 17039534 DOI: 10.1002/Mrd.20649  0.64
2006 Liang Y, Gardner DR, Miller CD, Chen D, Anderson AJ, Weimer BC, Sims RC. Study of biochemical pathways and enzymes involved in pyrene degradation by Mycobacterium sp. strain KMS. Applied and Environmental Microbiology. 72: 7821-8. PMID 17041157 DOI: 10.1128/Aem.01274-06  0.64
2006 Makarova K, Slesarev A, Wolf Y, Sorokin A, Mirkin B, Koonin E, Pavlov A, Pavlova N, Karamychev V, Polouchine N, Shakhova V, Grigoriev I, Lou Y, Rohksar D, Lucas S, ... ... Weimer B, et al. Comparative genomics of the lactic acid bacteria. Proceedings of the National Academy of Sciences of the United States of America. 103: 15611-6. PMID 17030793 DOI: 10.1073/Pnas.0607117103  0.64
2006 Ganesan B, Dobrowolski P, Weimer BC. Identification of the leucine-to-2-methylbutyric acid catabolic pathway of Lactococcus lactis. Applied and Environmental Microbiology. 72: 4264-73. PMID 16751541 DOI: 10.1128/Aem.00448-06  0.96
2004 Xie Y, Chou LS, Cutler A, Weimer B. DNA Macroarray profiling of Lactococcus lactis subsp. lactis IL1403 gene expression during environmental stresses. Applied and Environmental Microbiology. 70: 6738-47. PMID 15528540 DOI: 10.1128/Aem.70.11.6738-6747.2004  0.48
2004 Ganesan B, Seefeldt K, Weimer BC. Fatty acid production from amino acids and alpha-keto acids by Brevibacterium linens BL2. Applied and Environmental Microbiology. 70: 6385-93. PMID 15528496 DOI: 10.1128/Aem.70.11.6385-6393.2004  0.96
2004 Ganesan B, Weimer BC. Role of aminotransferase IlvE in production of branched-chain fatty acids by Lactococcus lactis subsp. lactis. Applied and Environmental Microbiology. 70: 638-41. PMID 14711703 DOI: 10.1128/Aem.70.1.638-641.2004  0.96
2002 Klaenhammer T, Altermann E, Arigoni F, Bolotin A, Breidt F, Broadbent J, Cano R, Chaillou S, Deutscher J, Gasson M, van de Guchte M, Guzzo J, Hartke A, Hawkins T, Hols P, ... ... Weimer B, et al. Discovering lactic acid bacteria by genomics. Antonie Van Leeuwenhoek. 82: 29-58. PMID 12369195 DOI: 10.1023/A:1020638309912  0.64
2001 Walsh MK, Wang X, Weimer BC. Optimizing the immobilization of single-stranded DNA onto glass beads. Journal of Biochemical and Biophysical Methods. 47: 221-31. PMID 11245893 DOI: 10.1016/S0165-022X(00)00146-9  0.64
2001 Weimer BC, Walsh MK, Beer C, Koka R, Wang X. Solid-phase capture of proteins, spores, and bacteria. Applied and Environmental Microbiology. 67: 1300-7. PMID 11229925 DOI: 10.1128/Aem.67.3.1300-1307.2001  0.64
2000 Weimer BC, Walsh MK, Wang X. Influence of a poly-ethylene glycol spacer on antigen capture by immobilized antibodies. Journal of Biochemical and Biophysical Methods. 45: 211-9. PMID 10989137 DOI: 10.1016/S0165-022X(00)00114-7  0.64
1999 Pederson JA, Mileski GJ, Weimer BC, Steele JL. Genetic characterization of a cell envelope-associated proteinase from Lactobacillus helveticus CNRZ32 Journal of Bacteriology. 181: 4592-4597. PMID 10419958 DOI: 10.1128/Jb.181.15.4592-4597.1999  0.64
1999 Chou LS, Weimer B. Isolation and characterization of acid- and bile-tolerant isolates from strains of Lactobacillus acidophilus. Journal of Dairy Science. 82: 23-31. PMID 10022003 DOI: 10.3168/Jds.S0022-0302(99)75204-5  0.44
1999 Stuart MR, Chou LS, Weimer BC. Influence of carbohydrate starvation and arginine on culturability and amino acid utilization of lactococcus lactis subsp. lactis. Applied and Environmental Microbiology. 65: 665-73. PMID 9925598 DOI: 10.1128/Aem.65.2.665-673.1999  0.64
1998 Broadbent JR, Strickland M, Weimer BC, Johnson ME, Steele JL. Peptide Accumulation and Bitterness in Cheddar Cheese Made Using Single-Strain Lactococcus lactis Starters with Distinct Proteinase Specificities Journal of Dairy Science. 81: 327-337. DOI: 10.3168/Jds.S0022-0302(98)75581-X  0.64
1997 Gao S, Oh DH, Broadbent JR, Johnson ME, Weimer BC, Steele JL. Aromatic amino acid catabolism by lactococci Lait. 77: 371-381. DOI: 10.1051/Lait:1997325  0.64
1996 Strickland M, Weimer BC, Broadbent JR. Capillary electrophoresis of Cheddar cheese Journal of Chromatography A. 731: 305-313. DOI: 10.1016/0021-9673(95)01160-9  0.64
Show low-probability matches.