Bart C. Weimer - Publications

Utah State University, Logan, UT, United States 
Microbiology Biology, Biochemistry

64/127 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Beck KL, Haiminen N, Chambliss D, Edlund S, Kunitomi M, Huang BC, Kong N, Ganesan B, Baker R, Markwell P, Kawas B, Davis M, Prill RJ, Krishnareddy H, Seabolt E, ... ... Weimer BC, et al. Monitoring the microbiome for food safety and quality using deep shotgun sequencing. Npj Science of Food. 5: 3. PMID 33558514 DOI: 10.1038/s41538-020-00083-y  0.96
2019 Haiminen N, Edlund S, Chambliss D, Kunitomi M, Weimer BC, Ganesan B, Baker R, Markwell P, Davis M, Huang BC, Kong N, Prill RJ, Marlowe CH, Quintanar A, Pierre S, et al. Food authentication from shotgun sequencing reads with an application on high protein powders. Npj Science of Food. 3: 24. PMID 33772018 DOI: 10.1038/s41538-019-0056-6  0.96
2019 Haiminen N, Edlund S, Chambliss D, Kunitomi M, Weimer BC, Ganesan B, Baker R, Markwell P, Davis M, Huang BC, Kong N, Prill RJ, Marlowe CH, Quintanar A, Pierre S, et al. Food authentication from shotgun sequencing reads with an application on high protein powders. Npj Science of Food. 3: 24. PMID 31754632 DOI: 10.1038/s41538-019-0056-6  0.96
2018 Weimer BC, Chen P, Desai PT, Chen D, Shah J. Whole Cell Cross-Linking to Discover Host-Microbe Protein Cognate Receptor/Ligand Pairs. Frontiers in Microbiology. 9: 1585. PMID 30072965 DOI: 10.3389/Fmicb.2018.01585  0.48
2017 Chen P, Reiter T, Huang B, Kong N, Weimer BC. Prebiotic Oligosaccharides Potentiate Host Protective Responses against L. Monocytogenes Infection. Pathogens (Basel, Switzerland). 6. PMID 29257110 DOI: 10.3390/Pathogens6040068  0.48
2017 Stevens JR, Jones TR, Lefevre M, Ganesan B, Weimer BC. SigTree: A Microbial Community Analysis Tool to Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree. Computational and Structural Biotechnology Journal. 15: 372-378. PMID 28748045 DOI: 10.1016/J.Csbj.2017.06.002  0.96
2017 Kong N, Davis M, Arabyan N, Huang BC, Weis AM, Chen P, Thao K, Ng W, Chin N, Foutouhi S, Foutouhi A, Kaufman J, Xie Y, Storey DB, Weimer BC. Draft Genome Sequences of 1,183 Salmonella Strains from the 100K Pathogen Genome Project. Genome Announcements. 5. PMID 28705963 DOI: 10.1128/Genomea.00518-17  0.48
2017 Weis AM, Gilpin B, Huang BC, Kong N, Chen P, Weimer BC. Shigella Draft Genome Sequences: Resources for Food Safety and Public Health. Genome Announcements. 5. PMID 28428292 DOI: 10.1128/Genomea.00176-17  0.48
2017 Chen P, Kong N, Huang B, Thao K, Ng W, Storey DB, Arabyan N, Foutouhi A, Foutouhi S, Weimer BC. 100K Pathogen Genome Project: 306 Listeria Draft Genome Sequences for Food Safety and Public Health. Genome Announcements. 5. PMID 28183778 DOI: 10.1128/Genomea.00967-16  0.48
2017 Weis AM, Huang BC, Storey DB, Kong N, Chen P, Arabyan N, Gilpin B, Mason C, Townsend AK, Smith WA, Byrne BA, Taff CC, Weimer BC. Large-Scale Release of Campylobacter Draft Genomes: Resources for Food Safety and Public Health from the 100K Pathogen Genome Project. Genome Announcements. 5. PMID 28057746 DOI: 10.1128/Genomea.00925-16  0.48
2016 Chen P, den Bakker HC, Korlach J, Kong N, Storey DB, Paxinos EE, Ashby M, Clark T, Luong K, Wiedmann M, Weimer BC. Comparative Genomics Reveal the Diversity of Restriction Methylation Systems in Listeria monocytogenes. Applied and Environmental Microbiology. PMID 27836852 DOI: 10.1128/Aem.02091-16  0.48
2016 Arabyan N, Park D, Foutouhi S, Weis AM, Huang BC, Williams CC, Desai P, Shah J, Jeannotte R, Kong N, Lebrilla CB, Weimer BC. Salmonella Degrades the Host Glycocalyx Leading to Altered Infection and Glycan Remodeling. Scientific Reports. 6: 29525. PMID 27389966 DOI: 10.1038/Srep29525  0.64
2015 Dhanasekaran AR, Pearson JL, Ganesan B, Weimer BC. Metabolome searcher: a high throughput tool for metabolite identification and metabolic pathway mapping directly from mass spectrometry and using genome restriction. Bmc Bioinformatics. 16: 62. PMID 25887958 DOI: 10.1186/S12859-015-0462-Y  0.64
2015 Worden N, Wilkop TE, Esteve VE, Jeannotte R, Lathe R, Vernhettes S, Weimer B, Hicks G, Alonso J, Labavitch J, Persson S, Ehrhardt D, Drakakaki G. CESA TRAFFICKING INHIBITOR inhibits cellulose deposition and interferes with the trafficking of cellulose synthase complexes and their associated proteins KORRIGAN1 and POM2/CELLULOSE SYNTHASE INTERACTIVE PROTEIN1. Plant Physiology. 167: 381-93. PMID 25535279 DOI: 10.1104/Pp.114.249003  0.64
2015 Pandey P, Lejeune M, Biswas S, Morash D, Weimer B, Young G. A new method for converting foodwaste into pathogen free soil amendment for enhancing agricultural sustainability Journal of Cleaner Production. DOI: 10.1016/J.Jclepro.2015.09.045  0.64
2014 Ferreyra JA, Wu KJ, Hryckowian AJ, Bouley DM, Weimer BC, Sonnenburg JL. Gut microbiota-produced succinate promotes C. difficile infection after antibiotic treatment or motility disturbance. Cell Host & Microbe. 16: 770-7. PMID 25498344 DOI: 10.1016/J.Chom.2014.11.003  0.64
2014 Shah J, Desai PT, Weimer BC. Genetic mechanisms underlying the pathogenicity of cold-stressed Salmonella enterica serovar typhimurium in cultured intestinal epithelial cells. Applied and Environmental Microbiology. 80: 6943-53. PMID 25192993 DOI: 10.1128/Aem.01994-14  0.48
2014 Deng X, Desai PT, den Bakker HC, Mikoleit M, Tolar B, Trees E, Hendriksen RS, Frye JG, Porwollik S, Weimer BC, Wiedmann M, Weinstock GM, Fields PI, McClelland M. Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages. Emerging Infectious Diseases. 20: 1481-9. PMID 25147968 DOI: 10.3201/Eid2009.131095  0.64
2014 Ganesan B, Weimer BC, Pinzon J, Dao Kong N, Rompato G, Brothersen C, McMahon DJ. Probiotic bacteria survive in Cheddar cheese and modify populations of other lactic acid bacteria. Journal of Applied Microbiology. 116: 1642-56. PMID 24905221 DOI: 10.1111/Jam.12482  0.96
2014 Kol A, Foutouhi S, Walker NJ, Kong NT, Weimer BC, Borjesson DL. Gastrointestinal microbes interact with canine adipose-derived mesenchymal stem cells in vitro and enhance immunomodulatory functions. Stem Cells and Development. 23: 1831-43. PMID 24803072 DOI: 10.1089/Scd.2014.0128  0.64
2014 Chen P, Jeannotte R, Weimer BC. Exploring bacterial epigenomics in the next-generation sequencing era: a new approach for an emerging frontier. Trends in Microbiology. 22: 292-300. PMID 24725482 DOI: 10.1016/J.Tim.2014.03.005  0.48
2014 Forquin-Gomez MP, Weimer BC, Sorieul L, Kalinowski J, Vallaeys T. The family Brevibacteriaceae The Prokaryotes: Actinobacteria. 141-153. DOI: 10.1007/978-3-642-30138-4_169  0.64
2013 He X, Mishchuk DO, Shah J, Weimer BC, Slupsky CM. Cross-talk between E. coli strains and a human colorectal adenocarcinoma-derived cell line. Scientific Reports. 3: 3416. PMID 24301462 DOI: 10.1038/Srep03416  0.48
2013 Riehle C, Wende AR, Sena S, Pires KM, Pereira RO, Zhu Y, Bugger H, Frank D, Bevins J, Chen D, Perry CN, Dong XC, Valdez S, Rech M, Sheng X, ... Weimer BC, et al. Insulin receptor substrate signaling suppresses neonatal autophagy in the heart. The Journal of Clinical Investigation. 123: 5319-33. PMID 24177427 DOI: 10.1172/Jci71171  0.64
2013 Shah J, Desai PT, Chen D, Stevens JR, Weimer BC. Preadaptation to cold stress in Salmonella enterica serovar Typhimurium increases survival during subsequent acid stress exposure. Applied and Environmental Microbiology. 79: 7281-9. PMID 24056458 DOI: 10.1128/Aem.02621-13  0.64
2013 Ng KM, Ferreyra JA, Higginbottom SK, Lynch JB, Kashyap PC, Gopinath S, Naidu N, Choudhury B, Weimer BC, Monack DM, Sonnenburg JL. Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens. Nature. 502: 96-9. PMID 23995682 DOI: 10.1038/Nature12503  0.64
2013 Maga EA, Weimer BC, Murray JD. Dissecting the role of milk components on gut microbiota composition. Gut Microbes. 4: 136-9. PMID 23235404 DOI: 10.4161/Gmic.23188  0.64
2012 Maga EA, Desai PT, Weimer BC, Dao N, Kültz D, Murray JD. Consumption of lysozyme-rich milk can alter microbial fecal populations. Applied and Environmental Microbiology. 78: 6153-60. PMID 22752159 DOI: 10.1128/Aem.00956-12  0.48
2012 Heithoff DM, Shimp WR, House JK, Xie Y, Weimer BC, Sinsheimer RL, Mahan MJ. Intraspecies variation in the emergence of hyperinfectious bacterial strains in nature. Plos Pathogens. 8: e1002647. PMID 22511871 DOI: 10.1371/Journal.Ppat.1002647  0.64
2012 Bugger H, Riehle C, Jaishy B, Wende AR, Tuinei J, Chen D, Soto J, Pires KM, Boudina S, Theobald HA, Luptak I, Wayment B, Wang X, Litwin SE, Weimer BC, et al. Genetic loss of insulin receptors worsens cardiac efficiency in diabetes. Journal of Molecular and Cellular Cardiology. 52: 1019-26. PMID 22342406 DOI: 10.1016/J.Yjmcc.2012.02.001  0.48
2012 Barboza M, Pinzon J, Wickramasinghe S, Froehlich JW, Moeller I, Smilowitz JT, Ruhaak LR, Huang J, Lönnerdal B, German JB, Medrano JF, Weimer BC, Lebrilla CB. Glycosylation of human milk lactoferrin exhibits dynamic changes during early lactation enhancing its role in pathogenic bacteria-host interactions. Molecular & Cellular Proteomics : McP. 11: M111.015248. PMID 22261723 DOI: 10.1074/Mcp.M111.015248  0.64
2011 Marcobal A, Barboza M, Sonnenburg ED, Pudlo N, Martens EC, Desai P, Lebrilla CB, Weimer BC, Mills DA, German JB, Sonnenburg JL. Bacteroides in the infant gut consume milk oligosaccharides via mucus-utilization pathways. Cell Host & Microbe. 10: 507-14. PMID 22036470 DOI: 10.1016/J.Chom.2011.10.007  0.64
2011 Parnell JJ, Rompato G, Crowl TA, Weimer BC, Pfrender ME. Phylogenetic distance in Great Salt Lake microbial communities Aquatic Microbial Ecology. 64: 267-273. DOI: 10.3354/Ame01527  0.64
2011 Latta IV LC, Baker M, Crowl T, Parnell JJ, Weimer B, DeWald DB, Pfrender ME. Species and genotype diversity drive community and ecosystem properties in experimental microcosms Evolutionary Ecology. 25: 1107-1125. DOI: 10.1007/S10682-010-9457-3  0.64
2010 Wang J, Zhao B, Zhang W, Wu X, Wang R, Huang Y, Chen D, Park K, Weimer BC, Shen Y. Mycoepoxydiene, a fungal polyketide, induces cell cycle arrest at the G2/M phase and apoptosis in HeLa cells. Bioorganic & Medicinal Chemistry Letters. 20: 7054-8. PMID 20970330 DOI: 10.1016/J.Bmcl.2010.09.105  0.48
2010 Parnell JJ, Rompato G, Latta LC, Pfrender ME, Van Nostrand JD, He Z, Zhou J, Andersen G, Champine P, Ganesan B, Weimer BC. Functional biogeography as evidence of gene transfer in hypersaline microbial communities. Plos One. 5: e12919. PMID 20957119 DOI: 10.1371/Journal.Pone.0012919  0.64
2010 Bugger H, Schwarzer M, Chen D, Schrepper A, Amorim PA, Schoepe M, Nguyen TD, Mohr FW, Khalimonchuk O, Weimer BC, Doenst T. Proteomic remodelling of mitochondrial oxidative pathways in pressure overload-induced heart failure. Cardiovascular Research. 85: 376-84. PMID 19843514 DOI: 10.1093/Cvr/Cvp344  0.48
2009 Tang CT, Lu MK, Guo Y, Wang YN, Peng JY, Wu WB, Li WH, Weimer BC, Chen D. Development of larval Schistosoma japonicum blocked in Oncomelania hupensis by pre-infection with larval Exorchis sp. The Journal of Parasitology. 95: 1321-5. PMID 19663532 DOI: 10.1645/Ge-2055.1  0.48
2009 Bugger H, Chen D, Riehle C, Soto J, Theobald HA, Hu XX, Ganesan B, Weimer BC, Abel ED. Tissue-specific remodeling of the mitochondrial proteome in type 1 diabetic akita mice. Diabetes. 58: 1986-97. PMID 19542201 DOI: 10.2337/Db09-0259  0.96
2009 Parnell JJ, Crowl TA, Weimer BC, Pfrender ME. Biodiversity in microbial communities: system scale patterns and mechanisms. Molecular Ecology. 18: 1455-62. PMID 19298265 DOI: 10.1111/J.1365-294X.2009.04128.X  0.64
2009 Chen D, Peel MD, Olson KC, Weimer BC, Dewald DB. Differential ruminai degradation of alfalfa proteins Canadian Journal of Plant Science. 89: 1065-1074. DOI: 10.4141/Cjps08220  0.64
2008 Zhan Y, Du X, Chen H, Liu J, Zhao B, Huang D, Li G, Xu Q, Zhang M, Weimer BC, Chen D, Cheng Z, Zhang L, Li Q, Li S, et al. Cytosporone B is an agonist for nuclear orphan receptor Nur77. Nature Chemical Biology. 4: 548-56. PMID 18690216 DOI: 10.1038/Nchembio.106  0.48
2008 Lee JH, Karamychev VN, Kozyavkin SA, Mills D, Pavlov AR, Pavlova NV, Polouchine NN, Richardson PM, Shakhova VV, Slesarev AI, Weimer B, O'Sullivan DJ. Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth. Bmc Genomics. 9: 247. PMID 18505588 DOI: 10.1186/1471-2164-9-247  0.64
2008 Desai PT, Walsh MK, Weimer BC. Solid-phase capture of pathogenic bacteria by using gangliosides and detection with real-time PCR. Applied and Environmental Microbiology. 74: 2254-8. PMID 18263751 DOI: 10.1128/Aem.02601-07  0.64
2008 Pate BJ, White KL, Chen D, Aston KI, Sessions BR, Bunch TD, Weimer BC. A novel approach to identify bovine sperm membrane proteins that interact with receptors on the vitelline membrane of bovine oocytes. Molecular Reproduction and Development. 75: 641-9. PMID 17886263 DOI: 10.1002/Mrd.20805  0.48
2007 Champine PJ, Michaelson J, Weimer BC, Welch DR, DeWald DB. Microarray analysis reveals potential mechanisms of BRMS1-mediated metastasis suppression. Clinical & Experimental Metastasis. 24: 551-65. PMID 17896182 DOI: 10.1007/S10585-007-9092-8  0.64
2007 Ganesan B, Stuart MR, Weimer BC. Carbohydrate starvation causes a metabolically active but nonculturable state in Lactococcus lactis. Applied and Environmental Microbiology. 73: 2498-512. PMID 17293521 DOI: 10.1128/Aem.01832-06  0.64
2007 Pate BJ, White KL, Winger QA, Rickords LF, Aston KI, Sessons BR, Li GP, Campbell KD, Weimer B, Bunch TD. Specific integrin subunits in bovine oocytes, including novel sequences for alpha 6 and beta 3 subunits. Molecular Reproduction and Development. 74: 600-7. PMID 17039534 DOI: 10.1002/Mrd.20649  0.64
2006 Liang Y, Gardner DR, Miller CD, Chen D, Anderson AJ, Weimer BC, Sims RC. Study of biochemical pathways and enzymes involved in pyrene degradation by Mycobacterium sp. strain KMS. Applied and Environmental Microbiology. 72: 7821-8. PMID 17041157 DOI: 10.1128/Aem.01274-06  0.64
2006 Makarova K, Slesarev A, Wolf Y, Sorokin A, Mirkin B, Koonin E, Pavlov A, Pavlova N, Karamychev V, Polouchine N, Shakhova V, Grigoriev I, Lou Y, Rohksar D, Lucas S, ... ... Weimer B, et al. Comparative genomics of the lactic acid bacteria. Proceedings of the National Academy of Sciences of the United States of America. 103: 15611-6. PMID 17030793 DOI: 10.1073/Pnas.0607117103  0.64
2006 Ganesan B, Dobrowolski P, Weimer BC. Identification of the leucine-to-2-methylbutyric acid catabolic pathway of Lactococcus lactis. Applied and Environmental Microbiology. 72: 4264-73. PMID 16751541 DOI: 10.1128/Aem.00448-06  0.96
2004 Xie Y, Chou LS, Cutler A, Weimer B. DNA Macroarray profiling of Lactococcus lactis subsp. lactis IL1403 gene expression during environmental stresses. Applied and Environmental Microbiology. 70: 6738-47. PMID 15528540 DOI: 10.1128/Aem.70.11.6738-6747.2004  0.48
2004 Ganesan B, Seefeldt K, Weimer BC. Fatty acid production from amino acids and alpha-keto acids by Brevibacterium linens BL2. Applied and Environmental Microbiology. 70: 6385-93. PMID 15528496 DOI: 10.1128/Aem.70.11.6385-6393.2004  0.96
2004 Ganesan B, Weimer BC. Role of aminotransferase IlvE in production of branched-chain fatty acids by Lactococcus lactis subsp. lactis. Applied and Environmental Microbiology. 70: 638-41. PMID 14711703 DOI: 10.1128/Aem.70.1.638-641.2004  0.96
2002 Klaenhammer T, Altermann E, Arigoni F, Bolotin A, Breidt F, Broadbent J, Cano R, Chaillou S, Deutscher J, Gasson M, van de Guchte M, Guzzo J, Hartke A, Hawkins T, Hols P, ... ... Weimer B, et al. Discovering lactic acid bacteria by genomics. Antonie Van Leeuwenhoek. 82: 29-58. PMID 12369195 DOI: 10.1023/A:1020638309912  0.64
2001 Walsh MK, Wang X, Weimer BC. Optimizing the immobilization of single-stranded DNA onto glass beads. Journal of Biochemical and Biophysical Methods. 47: 221-31. PMID 11245893 DOI: 10.1016/S0165-022X(00)00146-9  0.64
2001 Weimer BC, Walsh MK, Beer C, Koka R, Wang X. Solid-phase capture of proteins, spores, and bacteria. Applied and Environmental Microbiology. 67: 1300-7. PMID 11229925 DOI: 10.1128/Aem.67.3.1300-1307.2001  0.64
2000 Weimer BC, Walsh MK, Wang X. Influence of a poly-ethylene glycol spacer on antigen capture by immobilized antibodies. Journal of Biochemical and Biophysical Methods. 45: 211-9. PMID 10989137 DOI: 10.1016/S0165-022X(00)00114-7  0.64
1999 Pederson JA, Mileski GJ, Weimer BC, Steele JL. Genetic characterization of a cell envelope-associated proteinase from Lactobacillus helveticus CNRZ32 Journal of Bacteriology. 181: 4592-4597. PMID 10419958 DOI: 10.1128/Jb.181.15.4592-4597.1999  0.64
1999 Chou LS, Weimer B. Isolation and characterization of acid- and bile-tolerant isolates from strains of Lactobacillus acidophilus. Journal of Dairy Science. 82: 23-31. PMID 10022003 DOI: 10.3168/Jds.S0022-0302(99)75204-5  0.44
1999 Stuart MR, Chou LS, Weimer BC. Influence of carbohydrate starvation and arginine on culturability and amino acid utilization of lactococcus lactis subsp. lactis. Applied and Environmental Microbiology. 65: 665-73. PMID 9925598 DOI: 10.1128/Aem.65.2.665-673.1999  0.64
1998 Broadbent JR, Strickland M, Weimer BC, Johnson ME, Steele JL. Peptide Accumulation and Bitterness in Cheddar Cheese Made Using Single-Strain Lactococcus lactis Starters with Distinct Proteinase Specificities Journal of Dairy Science. 81: 327-337. DOI: 10.3168/Jds.S0022-0302(98)75581-X  0.64
1997 Gao S, Oh DH, Broadbent JR, Johnson ME, Weimer BC, Steele JL. Aromatic amino acid catabolism by lactococci Lait. 77: 371-381. DOI: 10.1051/Lait:1997325  0.64
1996 Strickland M, Weimer BC, Broadbent JR. Capillary electrophoresis of Cheddar cheese Journal of Chromatography A. 731: 305-313. DOI: 10.1016/0021-9673(95)01160-9  0.64
Low-probability matches
2020 Chang R, Pandey P, Li Y, Venkitasamy C, Chen Z, Gallardo R, Weimer B, Jay-Russell M, Weimer B. Assessment of gaseous ozone treatment on Salmonella Typhimurium and Escherichia coli O157:H7 reductions in poultry litter. Waste Management (New York, N.Y.). 117: 42-47. PMID 32805600 DOI: 10.1016/J.Wasman.2020.07.039  0.28
2017 Arabyan N, Huang BC, Weimer BC. Draft Genome Sequences of Salmonella Lysozyme Gene Knockout Mutants. Genome Announcements. 5. PMID 28596411 DOI: 10.1128/Genomea.00519-17  0.28
2017 Arabyan N, Huang BC, Weimer BC. Amylases and Their Importance during Glycan Degradation: Genome Sequence Release of Salmonella Amylase Knockout Strains. Genome Announcements. 5. PMID 28522713 DOI: 10.1128/Genomea.00355-17  0.28
2020 Higdon SM, Pozzo T, Kong N, Huang BC, Yang ML, Jeannotte R, Brown CT, Bennett AB, Weimer BC. Genomic characterization of a diazotrophic microbiota associated with maize aerial root mucilage. Plos One. 15: e0239677. PMID 32986754 DOI: 10.1371/journal.pone.0239677  0.24
2019 Kaufman JH, Elkins CA, Davis M, Weis AM, Huang BC, Mammel MK, Patel IR, Beck KL, Edlund S, Chambliss D, Douglas J, Bianco S, Kunitomi M, Weimer BC. Insular Microbiogeography: Three Pathogens as Exemplars. Current Issues in Molecular Biology. 36: 89-108. PMID 31596250 DOI: 10.21775/Cimb.036.089  0.24
2019 Campbell E, Gerst M, Huang BC, Kong N, Weimer BC, Yousef AE. Draft Genome Sequence of Bacillus velezensis CE2, Which Genetically Encodes a Novel Multicomponent Lantibiotic. Microbiology Resource Announcements. 8. PMID 30687828 DOI: 10.1128/MRA.01420-18  0.24
2017 Weis AM, Clothier KA, Huang BC, Kong N, Weimer BC. Draft Genome Sequence of Multidrug-Resistant Abortive Campylobacter jejuni from Northern California. Genome Announcements. 5. PMID 28408683 DOI: 10.1128/Genomea.00171-17  0.24
2017 Draper JL, Hansen LM, Bernick DL, Abedrabbo S, Underwood JG, Kong N, Huang BC, Weis AM, Weimer BC, van Vliet AH, Pourmand N, Solnick JV, Karplus K, Ottemann KM. Fallacy of the Unique Genome: Sequence Diversity within Single Helicobacter pylori Strains. Mbio. 8. PMID 28223462 DOI: 10.1128/Mbio.02321-16  0.24
2016 Weis AM, Clothier KA, Huang BC, Kong N, Weimer BC. Draft Genome Sequences of Campylobacter jejuni Strains That Cause Abortion in Livestock. Genome Announcements. 4. PMID 27908990 DOI: 10.1128/Genomea.01324-16  0.24
2016 Park D, Arabyan N, Williams CC, Song T, Mitra A, Weimer BC, Maverakis E, Lebrilla CB. Salmonella Typhimurium enzymatically landscapes the host intestinal epithelial cell surface glycome to increase invasion. Molecular & Cellular Proteomics : McP. PMID 27754876 DOI: 10.1074/Mcp.M116.063206  0.24
2016 Hu Y, Yang X, Li J, Lv N, Liu F, Wu J, Lin IY, Wu N, Weimer BC, Gao GF, Liu Y, Zhu B. The transfer network of bacterial mobile resistome connecting animal and human microbiome. Applied and Environmental Microbiology. PMID 27613679 DOI: 10.1128/Aem.01802-16  0.24
2010 LoCascio RG, Desai P, Sela DA, Weimer BC, Mills DA. Broad conservation of milk utilization genes in Bifidobacterium longum subsp. infantis as revealed by comparative genomic hybridization. Applied and Environmental Microbiology. 76: 7373-7381. PMID 20802066 DOI: 10.1128/Aem.00675-10  0.24
2017 Arabyan N, Weis AM, Huang BC, Weimer BC. Implication of Sialidases in Salmonella Infection: Genome Release of Sialidase Knockout Strains from Salmonella enterica Serovar Typhimurium LT2. Genome Announcements. 5. PMID 28495784 DOI: 10.1128/Genomea.00341-17  0.2
2015 Wende AR, O'Neill BT, Bugger H, Riehle C, Tuinei J, Buchanan J, Tsushima K, Wang L, Caro P, Guo A, Sloan C, Kim BJ, Wang X, Pereira RO, McCrory MA, ... ... Weimer BC, et al. Enhanced cardiac Akt/protein kinase B signaling contributes to pathological cardiac hypertrophy in part by impairing mitochondrial function via transcriptional repression of mitochondrion-targeted nuclear genes. Molecular and Cellular Biology. 35: 831-46. PMID 25535334 DOI: 10.1128/Mcb.01109-14  0.2
2021 Miller JJ, Weimer BC, Timme R, Lüdeke CHM, Pettengill JB, Bandoy DD, Weis AM, Kaufman J, Huang BC, Payne J, Strain E, Jones JL. Erratum for Miller et al., "Phylogenetic and Biogeographic Patterns of Vibrio parahaemolyticus Strains from North America Inferred from Whole-Genome Sequence Data". Applied and Environmental Microbiology. 87: e0069321. PMID 34037462 DOI: 10.1128/AEM.00693-21  0.16
2020 Higdon SM, Huang BC, Bennett AB, Weimer BC. Identification of Nitrogen Fixation Genes in Isolated from Maize Using Population Genomics and Machine Learning. Microorganisms. 8. PMID 33419343 DOI: 10.3390/microorganisms8122043  0.16
2020 Miller JJ, Weimer BC, Timme R, Lüdeke CHM, Pettengill JB, Bandoy DD, Weis AM, Kaufman J, Huang BC, Payne J, Strain E, Jones JL. Phylogenetic and Biogeographic Patterns of from North America Inferred from Whole Genome Sequence Data. Applied and Environmental Microbiology. PMID 33187991 DOI: 10.1128/AEM.01403-20  0.16
2018 Lawton SJ, Weis AM, Byrne BA, Fritz H, Taff CC, Townsend AK, Weimer BC, Mete A, Wheeler S, Boyce WM. Comparative analysis of Campylobacter isolates from wild birds and chickens using MALDI-TOF MS, biochemical testing, and DNA sequencing. Journal of Veterinary Diagnostic Investigation : Official Publication of the American Association of Veterinary Laboratory Diagnosticians, Inc. 1040638718762562. PMID 29528812 DOI: 10.1177/1040638718762562  0.16
2017 Arabyan N, Huang BC, Weimer BC. Draft Genome Sequences of Salmonella enterica Serovar Typhimurium LT2 with Deleted Chitinases That Are Emerging Virulence Factors. Genome Announcements. 5. PMID 28774970 DOI: 10.1128/Genomea.00659-17  0.16
2017 Emond-Rheault JG, Jeukens J, Freschi L, Kukavica-Ibrulj I, Boyle B, Dupont MJ, Colavecchio A, Barrere V, Cadieux B, Arya G, Bekal S, Berry C, Burnett E, Cavestri C, Chapin TK, ... ... Weimer BC, et al. A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis. Frontiers in Microbiology. 8: 996. PMID 28626454 DOI: 10.3389/Fmicb.2017.00996  0.16
2017 Kong N, Ng W, Thao K, Agulto R, Weis A, Kim KS, Korlach J, Hickey L, Kelly L, Lappin S, Weimer BC. Automation of PacBio SMRTbell NGS library preparation for bacterial genome sequencing. Standards in Genomic Sciences. 12: 27. PMID 28344744 DOI: 10.1186/S40793-017-0239-1  0.16
2016 Weis AM, Storey DB, Taff CC, Townsend AK, Huang BC, Kong NT, Clothier KA, Spinner A, Byrne BA, Weimer BC. Genomic Comparisons and Zoonotic Potential of Campylobacter Between Birds, Primates, and Livestock. Applied and Environmental Microbiology. PMID 27736787 DOI: 10.1128/Aem.01746-16  0.16
2016 Taff CC, Weis AM, Wheeler S, Hinton MG, Weimer BC, Barker CM, Jones M, Logsdon R, Smith WA, Boyce WM, Townsend AK. Influence of host ecology and behavior on Campylobacter jejuni prevalence and environmental contamination risk in a synanthropic wild bird. Applied and Environmental Microbiology. PMID 27260356 DOI: 10.1128/Aem.01456-16  0.16
2016 Camargo MC, Torres J, Solnick JV, Raley C, Storey D, Becker M, Torres R, Weis A, Huang C, Kong N, Hanson LM, Zhao Y, Chen X, Tran B, Weimer B, et al. Abstract 3438: DNA methylation profiles of Helicobacter pylori strains from patients with gastric cancer and gastritis Cancer Research. 76: 3438-3438. DOI: 10.1158/1538-7445.Am2016-3438  0.16
2015 Lüdeke CH, Kong N, Weimer BC, Fischer M, Jones JL. Complete Genome Sequences of a Clinical Isolate and an Environmental Isolate of Vibrio parahaemolyticus. Genome Announcements. 3. PMID 25814612 DOI: 10.1128/Genomea.00216-15  0.16
2020 Pandey P, Vidyarthi SK, Vaddella V, Venkitasamy C, Pitesky M, Weimer B, Pires AFA. Improving Biosecurity Procedures to Minimize the Risk of Spreading Pathogenic Infections Agents After Carcass Recycling. Frontiers in Microbiology. 11: 623. PMID 32390969 DOI: 10.3389/Fmicb.2020.00623  0.12
2017 Borras E, Aksenov AA, Baird M, Novick B, Schivo M, Zamuruyev KO, Pasamontes A, Parry C, Foutouhi S, Venn-Watson S, Weimer BC, Davis CE. Exhaled breath condensate methods adapted from human studies using longitudinal metabolomics for predicting early health alterations in dolphins. Analytical and Bioanalytical Chemistry. PMID 29063162 DOI: 10.1007/S00216-017-0581-6  0.08
2017 Aksenov AA, Zamuruyev KO, Pasamontes A, Brown JF, Schivo M, Foutouhi S, Weimer BC, Kenyon NJ, Davis CE. Analytical methodologies for broad metabolite coverage of exhaled breath condensate. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 1061: 17-25. PMID 28697414 DOI: 10.1016/J.Jchromb.2017.06.038  0.08
2016 Zamuruyev KO, Aksenov AA, Pasamontes A, Brown JF, Pettit DR, Foutouhi S, Weimer BC, Schivo M, Kenyon NJ, Delplanque JP, Davis CE. Human breath metabolomics using an optimized non-invasive exhaled breath condensate sampler. Journal of Breath Research. 11: 016001. PMID 28004639 DOI: 10.1088/1752-7163/11/1/016001  0.08
2016 Zamuruyev KO, Aksenov AA, Baird M, Pasamontes A, Parry C, Foutouhi S, Venn-Watson S, Weimer BC, Delplanque JP, Davis CE. Enhanced non-invasive respiratory sampling from bottlenose dolphins for breath metabolomics measurements. Journal of Breath Research. 10: 046005. PMID 27689905 DOI: 10.1088/1752-7155/10/4/046005  0.08
2007 Chen D, Liang M, DeWald D, Weimer B, Peel MD, Bugbee B, Michaelson J, Davis E, Wu Y. Identification of dehydration responsive genes from two non-nodulated alfalfa cultivars using Medicago truncatula microarrays Acta Physiologiae Plantarum. 30: 183-199. DOI: 10.1007/S11738-007-0107-5  0.08
1995 DIAS B, WEIMER B. A SEMI-AUTOMATED COLORIMETRIC METHOD FOR DETERMINATION OF AMINOPEPTIDASE ACTIVITY IN TURBID SOLUTIONS Journal of Rapid Methods and Automation in Microbiology. 3: 223-235. DOI: 10.1111/J.1745-4581.1995.Tb00098.X  0.08
2020 Higdon SM, Pozzo T, Tibbett EJ, Chiu C, Jeannotte R, Weimer BC, Bennett AB. Diazotrophic bacteria from maize exhibit multifaceted plant growth promotion traits in multiple hosts. Plos One. 15: e0239081. PMID 32925972 DOI: 10.1371/Journal.Pone.0239081  0.04
2020 Dias B, Weimer B. Purification and characterization of L-methionine gamma-lyase from brevibacterium linens BL2 Applied and Environmental Microbiology. 64: 3327-31. PMID 9726878 DOI: 10.1128/Aem.64.9.3327-3331.1998  0.04
2018 Van Deynze A, Zamora P, Delaux PM, Heitmann C, Jayaraman D, Rajasekar S, Graham D, Maeda J, Gibson D, Schwartz KD, Berry AM, Bhatnagar S, Jospin G, Darling A, Jeannotte R, ... ... Weimer BC, et al. Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota. Plos Biology. 16: e2006352. PMID 30086128 DOI: 10.1371/Journal.Pbio.2006352  0.04
2014 Bua-In S, Paisooksantivatana Y, Weimer B, Chowpongpang S. Molecular cloning and expression levels of the monoterpene synthase gene (ZMM1) in Cassumunar ginger (Zingiber montanum (Koenig) Link ex Dietr.) Archives of Biological Sciences. 66: 1321-1331. DOI: 10.2298/Abs1404321B  0.04
1999 Dias B, Weimer B. Production of volatile sulfur compounds in Cheddar cheese slurries International Dairy Journal. 9: 605-611. DOI: 10.1016/S0958-6946(99)00130-2  0.04
1996 Blake M, Koka R, Weimer B. A Semiautomated Reflectance Colorimetric Method for the Determination of Lipase Activity in Milk Journal of Dairy Science. 79: 1164-1171. DOI: 10.3168/Jds.S0022-0302(96)76470-6  0.04
1989 Weimer B, Oberg C, Moyes L, Brown R, Richardson G. Comparison of Classical Ion Exchange Amino Acid Analysis and o-Phthaldialdehyde Methods to Characterize Proteolysis by Lactobacillus bulgaricus Journal of Dairy Science. 72: 2873-2876. DOI: 10.3168/Jds.S0022-0302(89)79437-6  0.04
2021 Bandoy DJDR, Weimer BC. Analysis of SARS-CoV-2 genomic epidemiology reveals disease transmission coupled to variant emergence and allelic variation. Scientific Reports. 11: 7380. PMID 33795722 DOI: 10.1038/s41598-021-86265-4  0.01
2021 Borras E, Schrumpf L, Stephens N, Weimer BC, Davis CE, Schelegle ES. Novel LC-MS-TOF method to detect and quantify ascorbic and uric acid simultaneously in different biological matrices. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 1168: 122588. PMID 33690092 DOI: 10.1016/j.jchromb.2021.122588  0.01
2020 Bandoy DDR, Weimer BC. Biological Machine Learning Combined with Population Genomics Reveals Virulence Gene Allelic Variants Cause Disease. Microorganisms. 8. PMID 32290186 DOI: 10.3390/microorganisms8040549  0.01
2020 Dias B, Weimer B. Conversion of methionine to thiols by lactococci, lactobacilli, and brevibacteria Applied and Environmental Microbiology. 64: 3320-6. PMID 9726877 DOI: 10.1128/Aem.64.9.3320-3326.1998  0.01
2018 Zamuruyev KO, Borras E, Pettit DR, Aksenov AA, Simmons JD, Weimer BC, Schivo M, Kenyon NJ, Delplanque JP, Davis CE. Effect of temperature control on the metabolite content in exhaled breath condensate. Analytica Chimica Acta. 1006: 49-60. PMID 30016264 DOI: 10.1016/J.Aca.2017.12.025  0.01
2017 Weimer BC. 100K Pathogen Genome Project. Genome Announcements. 5. PMID 28705971 DOI: 10.1128/Genomea.00594-17  0.01
2016 Edlund SB, Beck KL, Haiminen N, Parida LP, Storey DB, Weimer BC, Kaufman JH, Chambliss DD. Design of the MCAW compute service for food safety bioinformatics Ibm Journal of Research and Development. 60: 2:1-2:12. DOI: 10.1147/Jrd.2016.2584798  0.01
2016 Weimer BC, Storey DB, Elkins CA, Baker RC, Markwell P, Chambliss DD, Edlund SB, Kaufman JH. Defining the food microbiome for authentication, safety, and process management Ibm Journal of Research and Development. 60: 1:1-1:13. DOI: 10.1147/Jrd.2016.2582598  0.01
2007 Wilkinson MG, Kilcawley KN. Carbohydrate metabolism and cheese flavour development Improving the Flavour of Cheese. 55-69. DOI: 10.1533/9781845693053.1.55  0.01
2007 Bayles A, Sessions B, Aston K, Brinkerhoff J, Chen D, Weimer B, White K. PURIFICATION OF BOVINE SPERM MEMBRANE-PROTEINS INVOLVED IN SPERM-OOCYTE INTERACTIONS: ADHESION, FUSION, AND ACTIVATION Biology of Reproduction. 77: 88-88. DOI: 10.1093/Biolreprod/77.S1.88  0.01
2004 Ganesan B, Seefeldt K, Koka RC, Dias B, Weimer BC. Monocarboxylic acid production by lactococci and lactobacilli International Dairy Journal. 14: 237-246. DOI: 10.1016/J.Idairyj.2003.07.004  0.01
2003 Ummadi M, Weimer BC. Use of capillary electrophoresis and laser-induced fluorescence for attomole detection of amino acids. Journal of Chromatography. A. 964: 243-53. PMID 12198853 DOI: 10.1016/S0021-9673(02)00692-1  0.01
2002 Ummadi M, Weimer BC. Tryptophan catabolism in Brevibacterium linens as a potential cheese flavor adjunct. Journal of Dairy Science. 84: 1773-82. PMID 11518299 DOI: 10.3168/Jds.S0022-0302(01)74614-0  0.01
2001 Koka RA, Weimer BC. Influence of growth conditions on heat-stable phospholipase activity in Pseudomonas. The Journal of Dairy Research. 68: 109-16. PMID 11289260 DOI: 10.1017/S0022029900004647  0.01
2001 Seefeldt KE, Weimer BC. Diversity of sulfur compound production in lactic acid bacteria. Journal of Dairy Science. 83: 2740-6. PMID 11132840 DOI: 10.3168/Jds.S0022-0302(00)75168-X  0.01
2001 Chou L, Weimer BC, Cutler R. Relationship of arginine and lactose utilization by Lactococcus lactis ssp. lactis ML3 International Dairy Journal. 11: 253-258. DOI: 10.1016/S0958-6946(01)00055-3  0.01
2000 Koka R, Weimer BC. Isolation and characterization of a protease from Pseudomonas fluorescens RO98. Journal of Applied Microbiology. 89: 280-8. PMID 10971760 DOI: 10.1046/J.1365-2672.2000.01108.X  0.01
2000 Koka R, Weimer BC. Investigation of the ability of a purified protease from Pseudomonas fluorescens RO98 to hydrolyze bitter peptides from cheese International Dairy Journal. 10: 75-79. DOI: 10.1016/S0958-6946(00)00023-6  0.01
1999 Weimer B, Seefeldt K, Dias B. Antonie Van Leeuwenhoek. 76: 247-261. DOI: 10.1023/A:1002050625344  0.01
1997 Blake MR, Weimer BC. Immunomagnetic detection of Bacillus stearothermophilus spores in food and environmental samples. Applied and Environmental Microbiology. 63: 1643-6. PMID 9143097 DOI: 10.1128/Aem.63.5.1643-1646.1997  0.01
1997 Weimer B, Dias B, Ummadi M, Broadbent J, Brennand C, Jaegi J, Johnson M, Milani F, Steele J, Sisson DV. Influence of NaCl and pH on intracellular enzymes that influence Cheddar cheese ripening Le Lait. 77: 383-398. DOI: 10.1051/Lait:1997326  0.01
1995 BLAKE MR, WEIMER BC, MCMAHON DJ, SAVELLO PA. Sensory and Microbial Quality of Milk Processed for Extended Shelf Life by Direct Steam Injection† Journal of Food Protection. 58: 1007-1013. DOI: 10.4315/0362-028X-58.9.1007  0.01
1991 Ernst E, Botzenhardt R, Matrai A, Weimer B, von Arnim T. Blood and plasma viscometry – A comparison between three viscometers Clinical Hemorheology and Microcirculation. 11: 575-581. DOI: 10.3233/CH-1991-11603  0.01
1991 Oberg CJ, Weimer BC, Moyes LV, Brown RJ, Richardson GH. Proteolytic Characterization of Lactobacillus delbrueckii ssp. bulgaricus Strains by the o-Phthaldialdehyde Test and Amino Acid Analysis Journal of Dairy Science. 74: 398-403. DOI: 10.3168/Jds.S0022-0302(91)78181-2  0.01
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