Yi Sheng, Ph.D. - Related publications

Affiliations: 
2004 University of Toronto, Toronto, ON, Canada 
Area:
Molecular Biology, Biochemistry
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Maryam A, Khalid RR, Vedithi SC, Ece A, Çınaroğlu SS, Siddiqi AR, Blundell TL. Exploring the structural basis of conformational heterogeneity and autoinhibition of human cGMP-specific protein kinase Iα through computational modelling and molecular dynamics simulations. Computational and Structural Biotechnology Journal. 18: 1625-1638. PMID 32670503 DOI: 10.1016/j.csbj.2020.06.016   
2020 Mao X, Yao S, Yi Q, Xu ZM, Cang X. Function-related asymmetry of the specific cardiolipin binding sites on the mitochondrial ADP/ATP carrier. Biochimica Et Biophysica Acta. Biomembranes. 183466. PMID 32871114 DOI: 10.1016/j.bbamem.2020.183466   
2020 Murphy P, Xu Y, Rouse SL, Jaffray EG, Plechanovová A, Matthews SJ, Carlos Penedo J, Hay RT. Functional 3D architecture in an intrinsically disordered E3 ligase domain facilitates ubiquitin transfer. Nature Communications. 11: 3807. PMID 32733036 DOI: 10.1038/s41467-020-17647-x   
2020 Cheung MY, Ngo JC, Chen Z, Jia Q, Li T, Gou Y, Wang Y, Lam HM. A Structure Model Explaining the Binding Between a Ubiquitous Unconventional G-protein (OsYchF1) and a Plant-Specific C2-Domain Protein (OsGAP1) from Rice. The Biochemical Journal. PMID 32955089 DOI: 10.1042/BCJ20200380   
2020 Hu W, Bhattacharya S, Hong T, Wong P, Li L, Vaidehi N, Kalkum M, Shively JE. Structural characterization of a dimeric complex between the short cytoplasmic domain of CEACAM1 and the pseudo tetramer of S100A10-Annexin A2 using NMR and molecular dynamics. Biochimica Et Biophysica Acta. Biomembranes. 183451. PMID 32835655 DOI: 10.1016/j.bbamem.2020.183451   
2020 Liao TJ, Jang H, Fushman D, Nussinov R. SOS1 interacts with Grb2 through regions that induce closed nSH3 conformations. The Journal of Chemical Physics. 153: 045106. PMID 32752665 DOI: 10.1063/5.0013926   
2020 Liang J, Karagiannis C, Pitsillou E, Darmawan KK, Ng K, Hung A, Karagiannis TC. Site mapping and small molecule blind docking reveal a possible target site on the SARS-CoV-2 main protease dimer interface. Computational Biology and Chemistry. 89: 107372. PMID 32911432 DOI: 10.1016/j.compbiolchem.2020.107372   
2020 Stubbs HE, Bensing BA, Yamakawa I, Sharma P, Yu H, Chen X, Sullam PM, Iverson TM. Tandem sialoglycan-binding modules in a Streptococcus sanguinis serine-rich repeat adhesin create target dependent avidity effects. The Journal of Biological Chemistry. PMID 32820052 DOI: 10.1074/jbc.RA120.014177   
2020 Kadkhodayi-Kholghi N, Bhatt JS, Gor J, McDermott LC, Gale DP, Perkins SJ. The solution structure of the complement deregulator FHR5 reveals a compact dimer and provides new insights into CFHR5 nephropathy. The Journal of Biological Chemistry. PMID 32928961 DOI: 10.1074/jbc.RA120.015132   
2020 Marx DC, Leblanc MJ, Plummer AM, Krueger S, Fleming KG. Domain Interactions Determine the Conformational Ensemble of the Periplasmic Chaperone SurA. Protein Science : a Publication of the Protein Society. PMID 32748422 DOI: 10.1002/pro.3924   
2020 Lee CW, Lee S, Jeong CS, Hwang J, Chang JH, Choi IG, Kim TD, Park H, Kim HY, Lee JH. Structural insights into the psychrophilic germinal protease PaGPR and its autoinhibitory loop. Journal of Microbiology (Seoul, Korea). 58: 772-779. PMID 32870483 DOI: 10.1007/s12275-020-0292-0   
2020 Zhang XW, Yang CH, Zhang HQ, Pan XT, Jin ZY, Zhang HW, Xia XH. A C-type lectin with antibacterial activity in weather loach, Misgurnus anguillicaudatus. Journal of Fish Diseases. PMID 32924173 DOI: 10.1111/jfd.13255   
2020 Bahun M, Hartman K, Poklar Ulrih N. Periplasmic production of pernisine in Escherichia coli and determinants for its high thermostability. Applied Microbiology and Biotechnology. PMID 32734388 DOI: 10.1007/s00253-020-10791-w   
2020 Ni X, Knapp S, Chaikuad A. Comparative structural analyses and nucleotide-binding characterization of the four KH domains of FUBP1. Scientific Reports. 10: 13459. PMID 32778776 DOI: 10.1038/s41598-020-69832-z   
2020 Lara J, Diacovich L, Trajtenberg F, Larrieux N, Malchiodi EL, Fernández MM, Gago G, Gramajo H, Buschiazzo A. Mycobacterium tuberculosis FasR senses long fatty acyl-CoA through a tunnel and a hydrophobic transmission spine. Nature Communications. 11: 3703. PMID 32710080 DOI: 10.1038/s41467-020-17504-x   
2020 Mazurkewich S, Helland R, Mackenzie A, Eijsink VGH, Pope PB, Brändén G, Larsbrink J. Structural insights of the enzymes from the chitin utilization locus of Flavobacterium johnsoniae. Scientific Reports. 10: 13775. PMID 32792608 DOI: 10.1038/s41598-020-70749-w   
2020 Butt BG, Scourfield EJ, Graham SC. Non-native fold of the putative VPS39 zinc finger domain. Wellcome Open Research. 5: 154. PMID 32724865 DOI: 10.12688/wellcomeopenres.16078.1   
2020 Cai F, Huang Y, Wang M, Sun M, Zhao Y, Hattori M. A FRET-based screening method to detect potential inhibitors of the binding of CNNM3 to PRL2. Scientific Reports. 10: 12879. PMID 32733084 DOI: 10.1038/s41598-020-69818-x   
2020 Medina E, Villalobos P, Hamilton GL, Komives EA, Sanabria H, Ramírez-Sarmiento CA, Babul J. Intrinsically disordered regions of the DNA-binding domain of human FoxP1 facilitate domain swapping. Journal of Molecular Biology. PMID 32735805 DOI: 10.1016/j.jmb.2020.07.017   
2020 Antoni C, Quentin D, Lang AE, Aktories K, Gatsogiannis C, Raunser S. Cryo-EM structure of the fully-loaded asymmetric anthrax lethal toxin in its heptameric pre-pore state. Plos Pathogens. 16: e1008530. PMID 32810181 DOI: 10.1371/journal.ppat.1008530   
2020 Ramanathan A, Parvatikar A, Chennubhotla SC, Mei Y, Sinha SC. Transient Unfolding and Long-Range Interactions in Viral BCL2 M11 Enable Binding to the BECN1 BH3 Domain. Biomolecules. 10. PMID 32932757 DOI: 10.3390/biom10091308   
2020 Jia M, Wu B, Yang Z, Chen C, Zhao M, Hou X, Niu X, Jin C, Hu Y. Conformational dynamics of the periplasmic chaperone SurA. Biochemistry. PMID 32786408 DOI: 10.1021/acs.biochem.0c00507   
2020 Yang J, Guan X, Zhang D, Zhao P, Guo S, Kuang Z. Crystal structure of the SPRY domain-containing protein 7 reveals unique structural features. Biochemical and Biophysical Research Communications. PMID 32800543 DOI: 10.1016/j.bbrc.2020.07.076   
2020 He F, Endo R, Kuwasako K, Takahashi M, Tsuda K, Nagata T, Watanabe S, Tanaka A, Kobayashi N, Kigawa T, Güntert P, Shirouzu M, Yokoyama S, Muto Y. H, C and N resonance assignment of the YTH domain of YTHDC2. Biomolecular Nmr Assignments. PMID 32930954 DOI: 10.1007/s12104-020-09974-3   
2020 Na I, Choi S, Son SH, Uversky VN, Kim CG. Drug Discovery Targeting the Disorder-To-Order Transition Regions through the Conformational Diversity Mimicking and Statistical Analysis. International Journal of Molecular Sciences. 21. PMID 32722024 DOI: 10.3390/ijms21155248   
2020 Stojanovski BM, Pelc LA, Zuo X, Di Cera E. Zymogen and activated protein C have similar structural architecture. The Journal of Biological Chemistry. PMID 32855236 DOI: 10.1074/jbc.RA120.014789   
2020 Vattepu R, Klausmeyer RA, Ayella A, Yadav R, Dille JT, Saiz SV, Beck MR. Conserved tryptophan mutation disrupts structure and function of immunoglobulin domain revealing unusual tyrosine fluorescence. Protein Science : a Publication of the Protein Society. PMID 32797644 DOI: 10.1002/pro.3929   
2020 Haque A, Cortes C, Alam MN, Sreedhar M, Ferreira VP, Pangburn MK. Characterization of Binding Properties of Individual Functional Sites of Human Complement Factor H. Frontiers in Immunology. 11: 1728. PMID 32849614 DOI: 10.3389/fimmu.2020.01728   
2020 Schön A, Freire E. Binding Thermodynamics to Intrinsically Disordered Protein Domains. Methods in Molecular Biology (Clifton, N.J.). 2141: 449-462. PMID 32696371 DOI: 10.1007/978-1-0716-0524-0_22   
2020 Huang SP, Zhou LC, Wen B, Wang P, Zhu GP. Biochemical Characterization and Crystal Structure of a Novel NAD-Dependent Isocitrate Dehydrogenase from . International Journal of Molecular Sciences. 21. PMID 32824636 DOI: 10.3390/ijms21165915   
2020 Perlinska AP, Kalek M, Christian T, Hou YM, Sulkowska JI. Mg-Dependent Methyl Transfer by a Knotted Protein: A Molecular Dynamics Simulation and Quantum Mechanics Study. Acs Catalysis. 10: 8058-8068. PMID 32904895 DOI: 10.1021/acscatal.0c00059   
2020 Wang Y, Wang B, Liu M, Jiang K, Wang M, Wang L. Characterization and function analysis of a Kazal-type serine proteinase inhibitor in the red claw crayfish Cherax quadricarinatus. Developmental and Comparative Immunology. 103871. PMID 32946920 DOI: 10.1016/j.dci.2020.103871   
2020 Gaziova I, Moncrief T, Christian CJ, Villarreal M, Powell S, Lee H, Qadota H, White MA, Benian GM, Oberhauser AF. Mutational Analysis of the Structure and Function of the Chaperoning Domain of UNC-45B. Biophysical Journal. PMID 32755562 DOI: 10.1016/j.bpj.2020.07.012   
2020 Lokareddy RK, Ko YH, Hong N, Doll SG, Paduch M, Niederweis M, Kossiakoff AA, Cingolani G. Recognition of an α-helical hairpin in P22 large terminase by a synthetic antibody fragment. Acta Crystallographica. Section D, Structural Biology. 76: 876-888. PMID 32876063 DOI: 10.1107/S2059798320009912   
2020 Sharma S, Mahajan S, Sunsunwal S, Khairnar A, Ramya TNC. Amino acid residues important for D-galactose recognition by the F-type lectin, Ranaspumin-4. Biochemical and Biophysical Research Communications. PMID 32819714 DOI: 10.1016/j.bbrc.2020.08.033   
2020 Kirchhofer D, Burdick DJ, Skelton NJ, Zhang Y, Ultsch M. Regions of conformational flexibility in the proprotein convertase PCSK9 and design of antagonists for LDL cholesterol lowering. Biochemical Society Transactions. PMID 32794575 DOI: 10.1042/BST20190672   
2020 Bhattacharya S, Sah PP, Banerjee A, Ray S. Structural impact due to PPQEE deletion in multiple cancer associated protein - Integrin αV: An In silico exploration. Bio Systems. 104216. PMID 32777252 DOI: 10.1016/j.biosystems.2020.104216   
2020 Kumar R, Jayaraman M, Ramadas K, Chandrasekaran A. Insight into the structural and functional analysis of the impact of missense mutation on cytochrome P450 oxidoreductase. Journal of Molecular Graphics & Modelling. 100: 107708. PMID 32805558 DOI: 10.1016/j.jmgm.2020.107708   
2020 Martinelli L, Adamopoulos A, Johansson P, Wan PT, Gunnarsson J, Guo H, Boyd H, Zelcer N, Sixma TK. Structural analysis of the LDL receptor-interacting FERM domain in the E3 ubiquitin ligase IDOL reveals an obscured substrate binding site. The Journal of Biological Chemistry. PMID 32727844 DOI: 10.1074/jbc.RA120.014349   
2020 Godoy-Castillo C, Bravo-Acuña N, Arriagada G, Faunes F, León R, Soto-Delgado J. Identification of the naphthoquinone derivative inhibitors binding site in heat shock protein 90: an induced-fit docking, molecular dynamics and 3D-QSAR study. Journal of Biomolecular Structure & Dynamics. 1-11. PMID 32799638 DOI: 10.1080/07391102.2020.1803134   
2020 Nebl S, Alwan WS, Williams ML, Sharma G, Taylor A, Doak BC, Wilde KL, McMahon RM, Halili MA, Martin JL, Capuano B, Fenwick RB, Mohanty B, Scanlon MJ. NMR fragment screening reveals a novel small molecule binding site near the catalytic surface of the disulfide-dithiol oxidoreductase enzyme DsbA from Burkholderia pseudomallei. Journal of Biomolecular Nmr. PMID 32761504 DOI: 10.1007/s10858-020-00339-5   
2020 Sakurai S, Shimizu T, Ohto U. Crystal structure of the FYCO1 RUN domain suggests possible interfaces with small GTPases. Acta Crystallographica. Section F, Structural Biology Communications. 76: 326-333. PMID 32744243 DOI: 10.1107/S2053230X20009012   
2020 Unni S, Deshmukh P, Krishnappa G, Kommu P, Balasundaram P. Structural insights into the multiple binding modes of Dimethyl Fumarate (DMF) and its analogs to the Kelch domain of Keap1. The Febs Journal. PMID 32672401 DOI: 10.1111/febs.15485   
2020 Rao Z, Kim SY, Li X, Kim DS, Kim YJ, Park JH. Insight into Structural Aspects of Histidine 284 of Arginine Kinase. Molecules and Cells. PMID 32863281 DOI: 10.14348/molcells.2020.0136   
2020 Chandna R, Kaczanowska K, Taylor P, Kini RM. Drysdalin, a snake neurotoxin with higher affinity for soluble acetylcholine binding protein from Aplysia californica than from Lymnaea stagnalis. Toxicon : Official Journal of the International Society On Toxinology. 187: 86-92. PMID 32889025 DOI: 10.1016/j.toxicon.2020.08.030   
2020 Miller MC, Nesmelova IV, Daragan VA, Ippel H, Michalak M, Dregni A, Kaltner H, Kopitz J, Gabius HJ, Mayo KH. Pro4 prolyl peptide bond isomerization in human galectin-7 modulates the monomer-dimer equilibrum to affect function. The Biochemical Journal. PMID 32766716 DOI: 10.1042/BCJ20200499   
2020 Marasco M, Carlomagno T. Specificity and regulation of phosphotyrosine signaling through SH2 domains. Journal of Structural Biology: X. 4: 100026. PMID 32647828 DOI: 10.1016/j.yjsbx.2020.100026   
2020 Jana B, Biswas I. Significance of individual domains of ClpL: a novel chaperone from . Biochemistry. PMID 32791831 DOI: 10.1021/acs.biochem.0c00544   
2020 Chen SK, Guan HH, Wu PH, Lin LT, Wu MC, Chang HY, Chen NC, Lin CC, Chuankhayan P, Huang YC, Lin PJ, Chen CJ. Structural insights into the histidine-containing phospho-transfer protein and receiver domain of sensor histidine kinase suggest a complex model in the two-component regulatory system in . Iucrj. 7: 934-948. PMID 32939285 DOI: 10.1107/S2052252520009665   
2020 Manne K, Chattopadhyay D, Agarwal V, Blom AM, Khare B, Chakravarthy S, Chang C, Ton-That H, Narayana SVL. Novel structure of the N-terminal helical domain of BibA, a group B streptococcus immunogenic bacterial adhesin. Acta Crystallographica. Section D, Structural Biology. 76: 759-770. PMID 32744258 DOI: 10.1107/S2059798320008116