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Boris L. Zybailov, Ph.D. - Publications

Affiliations: 
2003 Pennsylvania State University, State College, PA, United States 
Area:
General Biophysics
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29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Glazko G, Zybailov B, Emmert-Streib F, Baranova A, Rahmatallah Y. Proteome-transcriptome alignment of molecular portraits achieved by self-contained gene set analysis: Consensus colon cancer subtypes case study. Plos One. 14: e0221444. PMID 31437237 DOI: 10.1371/Journal.Pone.0221444  0.309
2016 Zybailov BL, Byrd AK, Glazko GV, Rahmatallah Y, Raney KD. Protein-Protein Interaction Analysis for Functional Characterization of Helicases. Methods (San Diego, Calif.). PMID 27090004 DOI: 10.1016/J.Ymeth.2016.04.014  0.311
2015 Zybailov B, Gokulan K, Wiese J, Ramanagoudr-Bhojappa R, Byrd AK, Glazko G, Jaiswal M, Mackintosh S, Varughese KI, Raney KD. Analysis of Protein-protein Interaction Interface between Yeast Mitochondrial Proteins Rim1 and Pif1 Using Chemical Cross-linking Mass Spectrometry. Journal of Proteomics & Bioinformatics. 8: 243-252. PMID 26807012 DOI: 10.4172/Jpb.1000376  0.332
2013 Zybailov BL, Glazko GV, Jaiswal M, Raney KD. Large Scale Chemical Cross-linking Mass Spectrometry Perspectives. Journal of Proteomics & Bioinformatics. 6: 001. PMID 25045217 DOI: 10.4172/Jpb.S2-001  0.31
2012 Lundquist PK, Poliakov A, Bhuiyan NH, Zybailov B, Sun Q, van Wijk KJ. The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis. Plant Physiology. 158: 1172-92. PMID 22274653 DOI: 10.1104/Pp.111.193144  0.381
2009 Zybailov B, Sun Q, van Wijk KJ. Workflow for large scale detection and validation of peptide modifications by RPLC-LTQ-Orbitrap: application to the Arabidopsis thaliana leaf proteome and an online modified peptide library. Analytical Chemistry. 81: 8015-24. PMID 19725545 DOI: 10.1021/Ac9011792  0.302
2009 Kim J, Rudella A, Ramirez Rodriguez V, Zybailov B, Olinares PD, van Wijk KJ. Subunits of the plastid ClpPR protease complex have differential contributions to embryogenesis, plastid biogenesis, and plant development in Arabidopsis. The Plant Cell. 21: 1669-92. PMID 19525416 DOI: 10.1105/Tpc.108.063784  0.324
2009 Zybailov B, Friso G, Kim J, Rudella A, Rodríguez VR, Asakura Y, Sun Q, van Wijk KJ. Large scale comparative proteomics of a chloroplast Clp protease mutant reveals folding stress, altered protein homeostasis, and feedback regulation of metabolism. Molecular & Cellular Proteomics : McP. 8: 1789-1810. PMID 19423572 DOI: 10.1074/Mcp.M900104-Mcp200  0.377
2009 Sun Q, Zybailov B, Majeran W, Friso G, Olinares PD, van Wijk KJ. PPDB, the Plant Proteomics Database at Cornell. Nucleic Acids Research. 37: D969-74. PMID 18832363 DOI: 10.1093/Nar/Gkn654  0.319
2008 Majeran W, Zybailov B, Ytterberg AJ, Dunsmore J, Sun Q, van Wijk KJ. Consequences of C4 differentiation for chloroplast membrane proteomes in maize mesophyll and bundle sheath cells. Molecular & Cellular Proteomics : McP. 7: 1609-38. PMID 18453340 DOI: 10.1074/Mcp.M800016-Mcp200  0.357
2008 Zybailov B, Rutschow H, Friso G, Rudella A, Emanuelsson O, Sun Q, van Wijk KJ. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Plos One. 3: e1994. PMID 18431481 DOI: 10.1371/Journal.Pone.0001994  0.356
2007 Zybailov BL, Florens L, Washburn MP. Quantitative shotgun proteomics using a protease with broad specificity and normalized spectral abundance factors. Molecular Biosystems. 3: 354-60. PMID 17460794 DOI: 10.1039/B701483J  0.314
2006 Zybailov B, Mosley AL, Sardiu ME, Coleman MK, Florens L, Washburn MP. Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae. Journal of Proteome Research. 5: 2339-47. PMID 16944946 DOI: 10.1021/Pr060161N  0.323
2005 Sakuragi Y, Zybailov B, Shen G, Bryant DA, Golbeck JH, Diner BA, Karygina I, Pushkar Y, Stehlik D. Recruitment of a foreign quinone into the A1 site of photosystem I. Characterization of a menB rubA double deletion mutant in Synechococcus sp. PCC 7002 devoid of FX, FA, and FB and containing plastoquinone or exchanged 9,10-anthraquinone. The Journal of Biological Chemistry. 280: 12371-81. PMID 15681848 DOI: 10.1074/Jbc.M412943200  0.569
2004 Sato S, Tomomori-Sato C, Parmely TJ, Florens L, Zybailov B, Swanson SK, Banks CA, Jin J, Cai Y, Washburn MP, Conaway JW, Conaway RC. A set of consensus mammalian mediator subunits identified by multidimensional protein identification technology. Molecular Cell. 14: 685-91. PMID 15175163 DOI: 10.1016/J.Molcel.2004.05.006  0.337
2004 Tomomori-Sato C, Sato S, Parmely TJ, Banks CA, Sorokina I, Florens L, Zybailov B, Washburn MP, Brower CS, Conaway RC, Conaway JW. A mammalian mediator subunit that shares properties with Saccharomyces cerevisiae mediator subunit Cse2. The Journal of Biological Chemistry. 279: 5846-51. PMID 14638676 DOI: 10.1074/Jbc.M312523200  0.329
2003 Xu W, Chitnis PR, Valieva A, van der Est A, Brettel K, Guergova-Kuras M, Pushkar YN, Zech SG, Stehlik D, Shen G, Zybailov B, Golbeck JH. Electron transfer in cyanobacterial photosystem I: II. Determination of forward electron transfer rates of site-directed mutants in a putative electron transfer pathway from A0 through A1 to FX. The Journal of Biological Chemistry. 278: 27876-87. PMID 12721306 DOI: 10.1074/Jbc.M302965200  0.6
2003 Xu W, Chitnis P, Valieva A, van der Est A, Pushkar YN, Krzystyniak M, Teutloff C, Zech SG, Bittl R, Stehlik D, Zybailov B, Shen G, Golbeck JH. Electron transfer in cyanobacterial photosystem I: I. Physiological and spectroscopic characterization of site-directed mutants in a putative electron transfer pathway from A0 through A1 to FX. The Journal of Biological Chemistry. 278: 27864-75. PMID 12721305 DOI: 10.1074/Jbc.M302962200  0.592
2003 Wade Johnson T, Naithani S, Stewart C, Zybailov B, Daniel Jones A, Golbeck JH, Chitnis PR. The menD and menE homologs code for 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylate synthase and O-succinylbenzoic acid-CoA synthase in the phylloquinone biosynthetic pathway of Synechocystis sp. PCC 6803. Biochimica Et Biophysica Acta. 1557: 67-76. PMID 12615349 DOI: 10.1016/S0005-2728(02)00396-1  0.605
2002 Shinkarev VP, Zybailov B, Vassiliev IR, Golbeck JH. Modeling of the P700+ charge recombination kinetics with phylloquinone and plastoquinone-9 in the A1 site of photosystem I. Biophysical Journal. 83: 2885-97. PMID 12496065 DOI: 10.1016/S0006-3495(02)75298-3  0.566
2002 Sakuragi Y, Zybailov B, Shen G, Jones AD, Chitnis PR, van der Est A, Bittl R, Zech S, Stehlik D, Golbeck JH, Bryant DA. Insertional inactivation of the menG gene, encoding 2-phytyl-1,4-naphthoquinone methyltransferase of Synechocystis sp. PCC 6803, results in the incorporation of 2-phytyl-1,4-naphthoquinone into the A(1) site and alteration of the equilibrium constant between A(1) and F(X) in photosystem I. Biochemistry. 41: 394-405. PMID 11772039 DOI: 10.1021/Bi011297W  0.604
2001 Johnson TW, Zybailov B, Jones AD, Bittl R, Zech S, Stehlik D, Golbeck JH, Chitnis PR. Recruitment of a foreign quinone into the A1 site of photosystem I. In vivo replacement of plastoquinone-9 by media-supplemented naphthoquinones in phylloquinone biosynthetic pathway mutants of Synechocystis sp. PCC 6803. The Journal of Biological Chemistry. 276: 39512-21. PMID 11470786 DOI: 10.1074/Jbc.M104040200  0.577
2001 Vassilieva EV, Antonkine ML, Zybailov BL, Yang F, Jakobs CU, Golbeck JH, Bryant DA. Electron transfer may occur in the chlorosome envelope: the CsmI and CsmJ proteins of chlorosomes are 2Fe-2S ferredoxins. Biochemistry. 40: 464-73. PMID 11148041 DOI: 10.1021/Bi001917D  0.679
2001 Golbeck J, Xu W, Zybailov B, Est Avd, Zech S, Stehlik D, Chitnis P. Electron transfer through the quinone acceptor in cyanobacterial Photosystem I Science Access. 3. DOI: 10.1071/Sa0403164  0.55
2000 Semenov AY, Vassiliev IR, van Der Est A, Mamedov MD, Zybailov B, Shen G, Stehlik D, Diner BA, Chitnis PR, Golbeck JH. Recruitment of a foreign quinone into the A1 site of photosystem I. Altered kinetics of electron transfer in phylloquinone biosynthetic pathway mutants studied by time-resolved optical, EPR, and electrometric techniques. The Journal of Biological Chemistry. 275: 23429-38. PMID 10801789 DOI: 10.1074/Jbc.M000508200  0.605
2000 Zybailov B, van der Est A, Zech SG, Teutloff C, Johnson TW, Shen G, Bittl R, Stehlik D, Chitnis PR, Golbeck JH. Recruitment of a foreign quinone into the A(1) site of photosystem I. II. Structural and functional characterization of phylloquinone biosynthetic pathway mutants by electron paramagnetic resonance and electron-nuclear double resonance spectroscopy. The Journal of Biological Chemistry. 275: 8531-9. PMID 10722691 DOI: 10.1074/Jbc.275.12.8531  0.583
2000 Johnson TW, Shen G, Zybailov B, Kolling D, Reategui R, Beauparlant S, Vassiliev IR, Bryant DA, Jones AD, Golbeck JH, Chitnis PR. Recruitment of a foreign quinone into the A(1) site of photosystem I. I. Genetic and physiological characterization of phylloquinone biosynthetic pathway mutants in Synechocystis sp. pcc 6803. The Journal of Biological Chemistry. 275: 8523-30. PMID 10722690 DOI: 10.1074/Jbc.275.12.8523  0.616
1998 Kjaer B, Frigaard NU, Yang F, Zybailov B, Miller M, Golbeck JH, Scheller HV. Menaquinone-7 in the reaction center complex of the green sulfur bacterium Chlorobium vibrioforme functions as the electron acceptor A1. Biochemistry. 37: 3237-42. PMID 9536963 DOI: 10.1021/Bi973121T  0.558
1998 Yang F, Shen G, Schluchter WM, Zybailov BL, Ganago AO, Vassiliev IR, Bryant DA, Golbeck JH. Deletion of the PsaF Polypeptide Modifies the Environment of the Redox-Active Phylloquinone (A1). Evidence for Unidirectionality of Electron Transfer in Photosystem I The Journal of Physical Chemistry B. 102: 8288-8299. DOI: 10.1021/Jp981952I  0.595
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