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Jan Aerts - Publications

Affiliations: 
Genome Dynamics and Evolution Group Wellcome Trust Sanger Institute, England, United Kingdom 
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39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Papadimitriou S, Gazzo A, Versbraegen N, Nachtegael C, Aerts J, Moreau Y, Van Dooren S, Nowé A, Smits G, Lenaerts T. Predicting disease-causing variant combinations. Proceedings of the National Academy of Sciences of the United States of America. PMID 31127050 DOI: 10.1073/Pnas.1815601116  0.32
2018 Moerman T, Aibar S, González-Blas CB, Simm J, Moreau Y, Aerts J, Aerts S. GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks. Bioinformatics (Oxford, England). PMID 30445495 DOI: 10.1093/Bioinformatics/Bty916  0.318
2018 Faria R, Triant D, Perdomo-Sabogal A, Overduin B, Bleidorn C, Santana CIB, Langenberger D, Dall’Olio GM, Indrischek H, Aerts J, Engelhardt J, Engelken J, Liebal K, Fasold M, Robb S, et al. Introducing evolutionary biologists to the analysis of big data: guidelines to organize extended bioinformatics training courses Evolution: Education and Outreach. 11. DOI: 10.1186/S12052-018-0080-Z  0.312
2016 Tranchevent L, Ardeshirdavani A, ElShal S, Alcaide D, Aerts J, Auboeuf D, Moreau Y. Candidate gene prioritization with Endeavour. Nucleic Acids Research. 44: 1-6. PMID 27131783 DOI: 10.1093/Nar/Gkw365  0.362
2015 Aerts J, Marai GE, Nieselt K, Nielsen C, Streit M, Weiskopf D. Highlights from the 5th Symposium on Biological Data Visualization: Part 1. Bmc Bioinformatics. 16: S1. PMID 26330192 DOI: 10.1186/1471-2105-16-S11-S1  0.317
2014 Sakai R, Aerts J. Sequence Diversity Diagram for comparative analysis of multiple sequence alignments. Bmc Proceedings. 8: S9. PMID 25237396 DOI: 10.1186/1753-6561-8-S2-S9  0.321
2014 Katayama T, Wilkinson MD, Aoki-Kinoshita KF, Kawashima S, Yamamoto Y, Yamaguchi A, Okamoto S, Kawano S, Kim JD, Wang Y, Wu H, Kano Y, Ono H, Bono H, Kocbek S, ... Aerts J, et al. BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. Journal of Biomedical Semantics. 5: 5. PMID 24495517 DOI: 10.1186/2041-1480-5-5  0.316
2014 Winand R, Hens K, Dondorp W, de Wert G, Moreau Y, Vermeesch JR, Liebaers I, Aerts J. In vitro screening of embryos by whole-genome sequencing: now, in the future or never? Human Reproduction (Oxford, England). 29: 842-51. PMID 24491297 DOI: 10.1093/Humrep/Deu005  0.388
2013 Sifrim A, Popovic D, Tranchevent LC, Ardeshirdavani A, Sakai R, Konings P, Vermeesch JR, Aerts J, De Moor B, Moreau Y. eXtasy: variant prioritization by genomic data fusion. Nature Methods. 10: 1083-4. PMID 24076761 DOI: 10.1038/Nmeth.2656  0.396
2013 Pavlopoulos GA, Oulas A, Iacucci E, Sifrim A, Moreau Y, Schneider R, Aerts J, Iliopoulos I. Unraveling genomic variation from next generation sequencing data. Biodata Mining. 6: 13. PMID 23885890 DOI: 10.1186/1756-0381-6-13  0.448
2013 Sakai R, Moisse M, Reumers J, Aerts J. Pipit: visualizing functional impacts of structural variations. Bioinformatics (Oxford, England). 29: 2206-7. PMID 23803468 DOI: 10.1093/Bioinformatics/Btt367  0.392
2013 Sakai R, Sifrim A, Vande Moere A, Aerts J. TrioVis: A visualization approach for filtering genomic variants of parent-child trios Bioinformatics. 29: 1801-1802. PMID 23658417 DOI: 10.1093/Bioinformatics/Btt267  0.343
2013 Pavlopoulos GA, Kumar P, Sifrim A, Sakai R, Lin ML, Voet T, Moreau Y, Aerts J. Meander: visually exploring the structural variome using space-filling curves. Nucleic Acids Research. 41: e118. PMID 23605045 DOI: 10.1093/Nar/Gkt254  0.422
2013 Katayama T, Wilkinson MD, Micklem G, Kawashima S, Yamaguchi A, Nakao M, Yamamoto Y, Okamoto S, Oouchida K, Chun HW, Aerts J, Afzal H, Antezana E, Arakawa K, Aranda B, et al. The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies. Journal of Biomedical Semantics. 4: 6. PMID 23398680 DOI: 10.1186/2041-1480-4-6  0.326
2012 Sifrim A, Van Houdt JK, Tranchevent LC, Nowakowska B, Sakai R, Pavlopoulos GA, Devriendt K, Vermeesch JR, Moreau Y, Aerts J. Annotate-it: a Swiss-knife approach to annotation, analysis and interpretation of single nucleotide variation in human disease. Genome Medicine. 4: 73. PMID 23013645 DOI: 10.1186/Gm374  0.412
2012 Mishima H, Aerts J, Katayama T, Bonnal RJP, Yoshiura K. The Ruby UCSC API: accessing the UCSC genome database using Ruby Bmc Bioinformatics. 13: 240-240. PMID 22994508 DOI: 10.1186/1471-2105-13-240  0.385
2012 Johansson S, Irgens H, Chudasama KK, Molnes J, Aerts J, Roque FS, Jonassen I, Levy S, Lima K, Knappskog PM, Bell GI, Molven A, Njølstad PR. Exome sequencing and genetic testing for MODY. Plos One. 7: e38050. PMID 22662265 DOI: 10.1371/Journal.Pone.0038050  0.348
2012 Neylon C, Aerts J, Brown CT, Coles SJ, Hatton L, Lemire D, Millman KJ, Murray-Rust P, Perez F, Saunders N, Shah N, Smith A, Varoquaux G, Willighagen E. Changing computational research. The challenges ahead. Source Code For Biology and Medicine. 7: 2. PMID 22640749 DOI: 10.1186/1751-0473-7-2  0.307
2012 Bartlett CW, Cheong SY, Hou L, Paquette J, Lum PY, Jäger G, Battke F, Vehlow C, Heinrich J, Nieselt K, Sakai R, Aerts J, Ray WC. An eQTL biological data visualization challenge and approaches from the visualization community. Bmc Bioinformatics. 13: S8. PMID 22607587 DOI: 10.1186/1471-2105-13-S8-S8  0.334
2012 Secrier M, Pavlopoulos GA, Aerts J, Schneider R. Arena3D: visualizing time-driven phenotypic differences in biological systems. Bmc Bioinformatics. 13: 45. PMID 22439608 DOI: 10.1186/1471-2105-13-45  0.376
2011 Pavlopoulos GA, Hooper SD, Sifrim A, Schneider R, Aerts J. Medusa: A tool for exploring and clustering biological networks. Bmc Research Notes. 4: 384. PMID 21978489 DOI: 10.1186/1756-0500-4-384  0.331
2011 Katayama T, Wilkinson MD, Vos R, Kawashima T, Kawashima S, Nakao M, Yamamoto Y, Chun HW, Yamaguchi A, Kawano S, Aerts J, Aoki-Kinoshita KF, Arakawa K, Aranda B, Bonnal RJ, et al. The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications. Journal of Biomedical Semantics. 2: 4. PMID 21806842 DOI: 10.1186/2041-1480-2-4  0.338
2011 Strozzi F, Aerts J. A Ruby API to query the Ensembl database for genomic features Bioinformatics. 27: 1013-1014. PMID 21278190 DOI: 10.1093/Bioinformatics/Btr050  0.363
2011 Kalay E, Yigit G, Aslan Y, Brown KE, Pohl E, Bicknell LS, Kayserili H, Li Y, Tüysüz B, Nürnberg G, Kiess W, Koegl M, Baessmann I, Buruk K, Toraman B, ... ... Aerts J, et al. CEP152 is a genome maintenance protein disrupted in Seckel syndrome. Nature Genetics. 43: 23-6. PMID 21131973 DOI: 10.1038/Ng.725  0.33
2010 Kettner C, Field D, Sansone SA, Taylor C, Aerts J, Binns N, Blake A, Britten CM, de Marco A, Fostel J, Gaudet P, González-Beltrán A, Hardy N, Hellemans J, Hermjakob H, et al. Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop. Standards in Genomic Sciences. 3: 259-66. PMID 21304730 DOI: 10.4056/Sigs.147362  0.301
2010 Goto N, Prins P, Nakao M, Bonnal RJP, Aerts J, Katayama T. BioRuby: Bioinformatics software for the Ruby programming language Bioinformatics. 26: 2617-2619. PMID 20739307 DOI: 10.1093/Bioinformatics/Btq475  0.314
2010 Craddock N, Hurles ME, Cardin N, Pearson RD, Plagnol V, Robson S, Vukcevic D, Barnes C, Conrad DF, Giannoulatou E, Holmes C, Marchini JL, Stirrups K, Tobin MD, ... ... Aerts J, et al. Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls. Nature. 464: 713-20. PMID 20360734 DOI: 10.1038/Nature08979  0.318
2010 Conrad DF, Pinto D, Redon R, Feuk L, Gokcumen O, Zhang Y, Aerts J, Andrews TD, Barnes C, Campbell P, Fitzgerald T, Hu M, Ihm CH, Kristiansson K, Macarthur DG, et al. Origins and functional impact of copy number variation in the human genome. Nature. 464: 704-12. PMID 19812545 DOI: 10.1038/Nature08516  0.374
2009 Connelley T, Aerts J, Law A, Morrison WI. Genomic analysis reveals extensive gene duplication within the bovine TRB locus Bmc Genomics. 10: 192-192. PMID 19393068 DOI: 10.1186/1471-2164-10-192  0.369
2009 Gibbs RA, Taylor JF, Van Tassell CP, Barendse W, Eversole KA, Gill CA, Green RD, Hamernik DL, Kappes SM, Lien S, Matukumalli LK, McEwan JC, Nazareth LV, Schnabel RD, ... ... Aerts J, et al. Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science (New York, N.Y.). 324: 528-32. PMID 19390050 DOI: 10.1126/Science.1167936  0.363
2009 Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL, Eichler EE, Elnitski L, Guigó R, Hamernik DL, Kappes SM, Lewin HA, Lynn DJ, ... ... Aerts J, et al. The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science (New York, N.Y.). 324: 522-8. PMID 19390049 DOI: 10.1126/Science.1169588  0.393
2009 Connelley T, Aerts J, Law AS, Morrison WI. Genomic and cDNA analysis of the bovine TCRβ gene repertoire Veterinary Immunology and Immunopathology. 128: 213. DOI: 10.1016/J.Vetimm.2008.10.010  0.372
2008 McKay SD, Schnabel RD, Murdoch BM, Matukumalli LK, Aerts J, Coppieters W, Crews D, Dias Neto E, Gill CA, Gao C, Mannen H, Wang Z, Van Tassell CP, Williams JL, Taylor JF, et al. An assessment of population structure in eight breeds of cattle using a whole genome SNP panel. Bmc Genetics. 9: 37. PMID 18492244 DOI: 10.1186/1471-2156-9-37  0.319
2007 McKay SD, Schnabel RD, Murdoch BM, Matukumalli LK, Aerts J, Coppieters W, Crews D, Dias Neto E, Gill CA, Gao C, Mannen H, Stothard P, Wang Z, Van Tassell CP, Williams JL, et al. Whole genome linkage disequilibrium maps in cattle. Bmc Genetics. 8: 74. PMID 17961247 DOI: 10.1186/1471-2156-8-74  0.369
2007 Snelling WM, Chiu R, Schein JE, Hobbs M, Abbey CA, Adelson DL, Aerts J, Bennett GL, Bosdet IE, Boussaha M, Brauning R, Caetano AR, Costa MM, Crawford AM, Dalrymple BP, et al. A physical map of the bovine genome. Genome Biology. 8: R165. PMID 17697342 DOI: 10.1186/Gb-2007-8-8-R165  0.364
2007 McKay SD, Schnabel RD, Murdoch BM, Aerts J, Gill CA, Gao C, Li C, Matukumalli LK, Stothard P, Wang Z, Van Tassell CP, Williams JL, Taylor JF, Moore SS. Construction of bovine whole-genome radiation hybrid and linkage maps using high-throughput genotyping. Animal Genetics. 38: 120-5. PMID 17302794 DOI: 10.1111/J.1365-2052.2006.01564.X  0.37
2006 Jann OC, Aerts J, Jones M, Hastings N, Law A, McKay S, Marques E, Prasad A, Yu J, Moore SS, Floriot S, Mahé MF, Eggen A, Silveri L, Negrini R, et al. A second generation radiation hybrid map to aid the assembly of the bovine genome sequence. Bmc Genomics. 7: 283. PMID 17087818 DOI: 10.1186/1471-2164-7-283  0.331
2004 Wallis JW, Aerts J, Groenen MA, Crooijmans RP, Layman D, Graves TA, Scheer DE, Kremitzki C, Fedele MJ, Mudd NK, Cardenas M, Higginbotham J, Carter J, McGrane R, Gaige T, et al. A physical map of the chicken genome. Nature. 432: 761-4. PMID 15592415 DOI: 10.1038/Nature03030  0.379
2003 Aerts J, Crooijmans R, Cornelissen S, Hemmatian K, Veenendaal T, Jaadar A, Poel Jvd, Fillon V, Vignal A, Groenen M. Integration of chicken genomic resources to enable whole-genome sequencing. Cytogenetic and Genome Research. 102: 297-303. PMID 14970720 DOI: 10.1159/000075766  0.371
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