Ivan R. Baxter, Ph.D. - Publications

2004 Scripps Research Institute, La Jolla, La Jolla, CA, United States 
Plant Pathology Agriculture, Biochemistry

68 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Li M, Perez-Limón S, Ramírez-Flores MR, Barrales-Gamez B, Meraz-Mercado MA, Ziegler G, Baxter I, Olalde-Portugal V, Sawers RJH. Mycorrhizal status and host genotype interact to shape plant nutrition in field grown maize (Zea mays ssp. mays). Mycorrhiza. PMID 37851276 DOI: 10.1007/s00572-023-01127-3  0.351
2022 Yoshihara T, Miller ND, Rabanal FA, Myles H, Kwak IY, Broman KW, Sadkhin B, Baxter I, Dilkes BP, Hudson ME, Spalding EP. Leveraging orthology within maize and Arabidopsis QTL to identify genes affecting natural variation in gravitropism. Proceedings of the National Academy of Sciences of the United States of America. 119: e2212199119. PMID 36161933 DOI: 10.1073/pnas.2212199119  0.344
2021 Sorgini CA, Roberts LM, Sullivan M, Cousins AB, Baxter I, Studer AJ. The genetic architecture of leaf stable carbon isotope composition in Zea mays and the effect of transpiration efficiency on leaf elemental accumulation. G3 (Bethesda, Md.). 11. PMID 34544133 DOI: 10.1093/g3journal/jkab222  0.344
2020 Whitt L, Ricachenevsky FK, Ziegler GZ, Clemens S, Walker E, Maathuis FJM, Kear P, Baxter I. A curated list of genes that affect the plant ionome. Plant Direct. 4: e00272. PMID 33103043 DOI: 10.1002/pld3.272  0.317
2020 Mamidi S, Healey A, Huang P, Grimwood J, Jenkins J, Barry K, Sreedasyam A, Shu S, Lovell JT, Feldman M, Wu J, Yu Y, Chen C, Johnson J, Sakakibara H, ... ... Baxter I, et al. A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci. Nature Biotechnology. 38: 1203-1210. PMID 33020633 DOI: 10.1038/s41587-020-0681-2  0.331
2020 Baxter IR, Blatt MR, Meyers BC. EDITORIAL: Portability at a Keystroke. The Plant Cell. PMID 32616664 DOI: 10.1105/Tpc.20.00517  0.357
2020 Baxter I. We aren't good at picking candidate genes, and it's slowing us down. Current Opinion in Plant Biology. 54: 57-60. PMID 32106014 DOI: 10.1016/J.Pbi.2020.01.006  0.366
2020 Ellsworth PZ, Feldman MJ, Baxter I, Cousins AB. A genetic link between leaf carbon isotope composition and whole-plant water use efficiency in the C grass Setaria. The Plant Journal : For Cell and Molecular Biology. PMID 31968138 DOI: 10.1111/Tpj.14696  0.359
2019 Fikas AA, Dilkes BP, Baxter I. Multivariate analysis reveals environmental and genetic determinants of element covariation in the maize grain ionome. Plant Direct. 3: e00139. PMID 31245778 DOI: 10.1002/pld3.139  0.312
2019 Taliercio E, Scaboo A, Baxter I, Locke AM. The Ionome of a Genetically Diverse Set of Wild Soybean Accessions Crop Science. 59: 1983-1991. DOI: 10.2135/Cropsci2019.02.0079  0.422
2018 Ziegler G, Nelson R, Granada S, Krishnan HB, Gillman JD, Baxter I. Genomewide association study of ionomic traits on diverse soybean populations from germplasm collections. Plant Direct. 2: e00033. PMID 31245681 DOI: 10.1002/pld3.33  0.313
2018 Köhler IH, Huber SC, Bernacchi CJ, Baxter IR. Increased temperatures may safeguard the nutritional quality of crops under future elevated CO concentrations. The Plant Journal : For Cell and Molecular Biology. PMID 30447177 DOI: 10.1111/Tpj.14166  0.305
2018 Schaefer R, Michno JM, Jeffers J, Hoekenga OA, Dilkes BP, Baxter IR, Myers C. Integrating co-expression networks with GWAS to prioritize causal genes in maize. The Plant Cell. PMID 30413654 DOI: 10.1105/Tpc.18.00299  0.372
2018 Feldman M, Ellsworth PZ, Fahlgren N, Gehan MA, Cousins AB, Baxter IR. Components of water use efficiency have unique genetic signatures in the model C4 grass Setaria. Plant Physiology. PMID 30093527 DOI: 10.1104/Pp.18.00146  0.405
2018 Pauli D, Ziegler G, Ren M, Jenks MA, Hunsaker DJ, Zhang M, Baxter I, Gore MA. Multivariate Analysis of the Cotton Seed Ionome Reveals a Shared Genetic Architecture. G3 (Bethesda, Md.). PMID 29437829 DOI: 10.1534/G3.117.300479  0.437
2017 Ramírez-Flores MR, Rellán-Álvarez R, Wozniak B, Gebreselassie MN, Jakobsen I, Olalde-Portugal V, Baxter I, Paszkowski U, Sawers RJH. Co-ordinated Changes in the Accumulation of Metal Ions in Maize (Zea mays ssp. mays L.) in Response to Inoculation with the Arbuscular Mycorrhizal Fungus Funneliformis mosseae. Plant & Cell Physiology. PMID 29016935 DOI: 10.1093/Pcp/Pcx100  0.448
2017 Feldman MJ, Paul RE, Banan D, Barrett JF, Sebastian J, Yee MC, Jiang H, Lipka AE, Brutnell TP, Dinneny JR, Leakey ADB, Baxter I. Time dependent genetic analysis links field and controlled environment phenotypes in the model C4 grass Setaria. Plos Genetics. 13: e1006841. PMID 28644860 DOI: 10.1371/Journal.Pgen.1006841  0.454
2017 Sawers RJ, Svane SF, Quan C, Grønlund M, Wozniak B, Gebreselassie MN, González-Muñoz E, Chávez Montes RA, Baxter I, Goudet J, Jakobsen I, Paszkowski U. Phosphorus acquisition efficiency in arbuscular mycorrhizal maize is correlated with the abundance of root-external hyphae and the accumulation of transcripts encoding PHT1 phosphate transporters. The New Phytologist. PMID 28098948 DOI: 10.1111/Nph.14403  0.437
2017 Unkefer CJ, Sayre RT, Magnuson JK, Anderson DB, Baxter I, Blaby IK, Brown JK, Carleton M, Cattolico RA, Dale T, Devarenne TP, Downes CM, Dutcher SK, Fox DT, Goodenough U, et al. Review of the algal biology program within the National Alliance for Advanced Biofuels and Bioproducts Algal Research. 22: 187-215. DOI: 10.1016/J.Algal.2016.06.002  0.311
2016 Addo-Quaye C, Buescher E, Best N, Chaikam V, Baxter I, Dilkes BP. Forward Genetics by Sequencing EMS Variation Induced Inbred Lines. G3 (Bethesda, Md.). PMID 28040779 DOI: 10.1534/G3.116.029660  0.355
2016 Asaro A, Ziegler G, Ziyomo C, Hoekenga O, Dilkes B, Baxter I. The Interaction of Genotype and Environment Determines Variation in the Maize Kernel Ionome. G3 (Bethesda, Md.). PMID 27770027 DOI: 10.1534/G3.116.034827  0.446
2016 Huber SC, Li K, Nelson R, Ulanov A, DeMuro CM, Baxter I. Canopy position has a profound effect on soybean seed composition. Peerj. 4: e2452. PMID 27672507 DOI: 10.7717/Peerj.2452  0.365
2016 Sebastian J, Yee MC, Goudinho Viana W, Rellán-Álvarez R, Feldman M, Priest HD, Trontin C, Lee T, Jiang H, Baxter I, Mockler TC, Hochholdinger F, Brutnell TP, Dinneny JR. Grasses suppress shoot-borne roots to conserve water during drought. Proceedings of the National Academy of Sciences of the United States of America. PMID 27422554 DOI: 10.1073/Pnas.1604021113  0.334
2016 Shakoor N, Ziegler G, Dilkes BP, Brenton Z, Boyles R, Connolly EL, Kresovich S, Baxter IR. Integration of experiments across diverse environments identifies the genetic determinants of variation in Sorghum bicolor seed element composition. Plant Physiology. PMID 26896393 DOI: 10.1104/Pp.15.01971  0.457
2015 Fahlgren N, Feldman M, Gehan MA, Wilson MS, Shyu C, Bryant DW, Hill ST, McEntee CJ, Warnasooriya SN, Kumar I, Ficor T, Turnipseed S, Gilbert KB, Brutnell TP, Carrington JC, ... ... Baxter I, et al. A versatile phenotyping system and analytics platform reveals diverse temporal responses to water availability in Setaria. Molecular Plant. PMID 26099924 DOI: 10.1016/J.Molp.2015.06.005  0.386
2015 Krishnan HB, Kim WS, Oehrle NW, Alaswad AA, Baxter I, Wiebold WJ, Nelson RL. Introgression of leginsulin, a cysteine-rich protein, and high-protein trait from an Asian soybean plant introduction genotype into a North American experimental soybean line. Journal of Agricultural and Food Chemistry. 63: 2862-9. PMID 25756929 DOI: 10.1021/Jf505202Z  0.368
2015 Fahlgren N, Gehan MA, Baxter I. Lights, camera, action: high-throughput plant phenotyping is ready for a close-up. Current Opinion in Plant Biology. 24: 93-9. PMID 25733069 DOI: 10.1016/J.Pbi.2015.02.006  0.411
2015 Baxter I. Should we treat the ionome as a combination of individual elements, or should we be deriving novel combined traits? Journal of Experimental Botany. 66: 2127-2131. PMID 25711709 DOI: 10.1093/Jxb/Erv040  0.365
2015 Ziegler GR, Hartsock RH, Baxter I. Zbrowse: an interactive GWAS results browser Peerj. 1. DOI: 10.7717/Peerj-Cs.3  0.313
2015 Kusano M, Baxter I, Fukushima A, Oikawa A, Okazaki Y, Nakabayashi R, Bouvrette DJ, Achard F, Jakubowski AR, Ballam JM, Phillips JR, Culler AH, Saito K, Harrigan GG. Assessing metabolomic and chemical diversity of a soybean lineage representing 35 years of breeding Metabolomics. 11: 261-270. DOI: 10.1007/S11306-014-0702-6  0.365
2014 Huang P, Feldman M, Schroder S, Bahri BA, Diao X, Zhi H, Estep M, Baxter I, Devos KM, Kellogg EA. Population genetics of Setaria viridis, a new model system. Molecular Ecology. 23: 4912-25. PMID 25185718 DOI: 10.1111/Mec.12907  0.337
2014 Baxter IR, Ziegler G, Lahner B, Mickelbart MV, Foley R, Danku J, Armstrong P, Salt DE, Hoekenga OA. Single-kernel ionomic profiles are highly heritable indicators of genetic and environmental influences on elemental accumulation in maize grain (Zea mays). Plos One. 9: e87628. PMID 24489944 DOI: 10.1371/Journal.Pone.0087628  0.406
2014 Zhang M, Pinson SRM, Tarpley L, Huang XY, Lahner B, Yakubova E, Baxter I, Guerinot ML, Salt DE. Mapping and validation of quantitative trait loci associated with concentrations of 16 elements in unmilled rice grain Theoretical and Applied Genetics. 127: 137-165. PMID 24231918 DOI: 10.1007/S00122-013-2207-5  0.396
2013 McDowell SC, Akmakjian G, Sladek C, Mendoza-Cozatl D, Morrissey JB, Saini N, Mittler R, Baxter I, Salt DE, Ward JM, Schroeder JI, Guerinot ML, Harper JF. Elemental concentrations in the seed of mutants and natural variants of Arabidopsis thaliana grown under varying soil conditions. Plos One. 8: e63014. PMID 23671651 DOI: 10.1371/Journal.Pone.0063014  0.637
2013 Shen M, Broeckling CD, Chu EY, Ziegler G, Baxter IR, Prenni JE, Hoekenga OA. Leveraging non-targeted metabolite profiling via statistical genomics. Plos One. 8: e57667. PMID 23469044 DOI: 10.1371/Journal.Pone.0057667  0.313
2013 Ziegler G, Terauchi A, Becker A, Armstrong P, Hudson K, Baxter I. Ionomic screening of field-grown soybean identifies mutants with altered seed elemental composition Plant Genome. 6. DOI: 10.3835/Plantgenome2012.07.0012  0.392
2013 Gillman JD, Baxter I, Bilyeu K. Phosphorus partitioning of soybean lines containing different mutant alleles of two soybean seed-specifi c adenosine triphosphate-binding cassette phytic acid transporter paralogs Plant Genome. 6. DOI: 10.3835/Plantgenome2012.06.0010  0.347
2013 Baxter IR, Gustin JL, Settles AM, Hoekenga OA. Ionomic characterization of maize kernels in the intermated b73 × mo17 population Crop Science. 53: 208-220. DOI: 10.2135/Cropsci2012.02.0135  0.355
2012 Yu D, Danku JM, Baxter I, Kim S, Vatamaniuk OK, Vitek O, Ouzzani M, Salt DE. High-resolution genome-wide scan of genes, gene-networks and cellular systems impacting the yeast ionome. Bmc Genomics. 13: 623. PMID 23151179 DOI: 10.1186/1471-2164-13-623  0.364
2012 Chao DY, Silva A, Baxter I, Huang YS, Nordborg M, Danku J, Lahner B, Yakubova E, Salt DE. Genome-wide association studies identify heavy metal ATPase3 as the primary determinant of natural variation in leaf cadmium in Arabidopsis thaliana. Plos Genetics. 8: e1002923. PMID 22969436 DOI: 10.1371/Journal.Pgen.1002923  0.37
2012 Muhlemann JK, Maeda H, Chang CY, San Miguel P, Baxter I, Cooper B, Perera MA, Nikolau BJ, Vitek O, Morgan JA, Dudareva N. Developmental changes in the metabolic network of snapdragon flowers. Plos One. 7: e40381. PMID 22808147 DOI: 10.1371/Journal.Pone.0040381  0.326
2012 Baxter I, Dilkes BP. Elemental profiles reflect plant adaptations to the environment. Science (New York, N.Y.). 336: 1661-3. PMID 22745418 DOI: 10.1126/Science.1219992  0.467
2012 Baxter I, Hermans C, Lahner B, Yakubova E, Tikhonova M, Verbruggen N, Chao D, Salt DE. Biodiversity of Mineral Nutrient and Trace Element Accumulation in Arabidopsis thaliana Plos One. 7. PMID 22558123 DOI: 10.1371/Journal.Pone.0035121  0.48
2011 Zhao J, Wang C, Bedair M, Welti R, Sumner LW, Baxter I, Wang X. Suppression of phospholipase Dγs confers increased aluminum resistance in Arabidopsis thaliana. Plos One. 6: e28086. PMID 22163277 DOI: 10.1371/Journal.Pone.0028086  0.324
2011 Yu D, Danku J, Baxter I, Kim S, Vatamaniuk OK, Salt DE, Vitek O. Noise reduction in genome-wide perturbation screens using linear mixed-effect models. Bioinformatics (Oxford, England). 27: 2173-80. PMID 21685046 DOI: 10.1093/Bioinformatics/Btr359  0.31
2011 Chao DY, Gable K, Chen M, Baxter I, Dietrich CR, Cahoon EB, Guerinot ML, Lahner B, Lü S, Markham JE, Morrissey J, Han G, Gupta SD, Harmon JM, Jaworski JG, et al. Sphingolipids in the root play an important role in regulating the leaf ionome in Arabidopsis thaliana. The Plant Cell. 23: 1061-81. PMID 21421810 DOI: 10.1105/Tpc.110.079095  0.429
2011 Becker A, Chao DY, Zhang X, Salt DE, Baxter I. Bulk segregant analysis using single nucleotide polymorphism microarrays. Plos One. 6: e15993. PMID 21297997 DOI: 10.1371/Journal.Pone.0015993  0.306
2010 Tian H, Baxter IR, Lahner B, Reinders A, Salt DE, Ward JM. Arabidopsis NPCC6/NaKR1 is a phloem mobile metal binding protein necessary for phloem function and root meristem maintenance Plant Cell. 22: 3963-3979. PMID 21193571 DOI: 10.1105/Tpc.110.080010  0.407
2010 Baxter I, Brazelton JN, Yu D, Huang YS, Lahner B, Yakubova E, Li Y, Bergelson J, Borevitz JO, Nordborg M, Vitek O, Salt DE. A coastal cline in sodium accumulation in Arabidopsis thaliana is driven by natural variation of the sodium transporter AtHKT1;1. Plos Genetics. 6: e1001193. PMID 21085628 DOI: 10.1371/Journal.Pgen.1001193  0.445
2010 Buescher E, Achberger T, Amusan I, Giannini A, Ochsenfeld C, Rus A, Lahner B, Hoekenga O, Yakubova E, Harper JF, Guerinot ML, Zhang M, Salt DE, Baxter IR. Natural genetic variation in selected populations of Arabidopsis thaliana is associated with ionomic differences. Plos One. 5: e11081. PMID 20559418 DOI: 10.1371/Journal.Pone.0011081  0.657
2010 Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, et al. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature. 465: 627-31. PMID 20336072 DOI: 10.1038/Nature08800  0.395
2010 Baxter I. Ionomics: The functional genomics of elements Briefings in Functional Genomics. 9: 149-156. PMID 20081216 DOI: 10.1093/Bfgp/Elp055  0.405
2009 Morrissey J, Baxter IR, Lee J, Li L, Lahner B, Grotz N, Kaplan J, Salt DE, Guerinot ML. The ferroportin metal efflux proteins function in iron and cobalt homeostasis in Arabidopsis. The Plant Cell. 21: 3326-38. PMID 19861554 DOI: 10.1105/Tpc.109.069401  0.302
2009 Baxter I. Ionomics: Studying the Social Network of Mineral Nutrients Current Opinion in Plant Biology. 12: 381-386. PMID 19481970 DOI: 10.1016/J.Pbi.2009.05.002  0.428
2009 Baxter I, Hosmani PS, Rus A, Lahner B, Borevitz JO, Muthukumar B, Mickelbart MV, Schreiber L, Franke RB, Salt DE. Root suberin forms an extracellular barrier that affects water relations and mineral nutrition in Arabidopsis. Plos Genetics. 5: e1000492. PMID 19461889 DOI: 10.1371/Journal.Pgen.1000492  0.402
2009 Baxter IR, Vitek O, Guerinot ML, Salt DE. Reply to Evens and Niedz: Multivariate ionomics models are robustly validated Proceedings of the National Academy of Sciences of the United States of America. 106. DOI: 10.1073/Pnas.0811786106  0.362
2009 Danku JMC, Gumaelius L, Baxter I, Salt DE. A high-throughput method for Saccharomyces cerevisiae (yeast) ionomics Journal of Analytical Atomic Spectrometry. 24: 103-107. DOI: 10.1039/B803529F  0.314
2008 Baxter IR, Vitek O, Lahner B, Muthukumar B, Borghi M, Morrissey J, Guerinot ML, Salt DE. The leaf ionome as a multivariable system to detect a plant's physiological status. Proceedings of the National Academy of Sciences of the United States of America. 105: 12081-6. PMID 18697928 DOI: 10.1073/Pnas.0804175105  0.389
2008 Baxter I, Muthukumar B, Park HC, Buchner P, Lahner B, Danku J, Zhao K, Lee J, Hawkesford MJ, Guerinot ML, Salt DE. Variation in molybdenum content across broadly distributed populations of Arabidopsis thaliana is controlled by a mitochondrial molybdenum transporter (MOT1). Plos Genetics. 4: e1000004. PMID 18454190 DOI: 10.1371/Journal.Pgen.1000004  0.4
2008 Salt DE, Baxter I, Lahner B. Ionomics and the Study of the Plant Ionome Annual Review of Plant Biology. 59: 709-733. PMID 18251712 DOI: 10.1146/Annurev.Arplant.59.032607.092942  0.413
2007 Borevitz JO, Hazen SP, Michael TP, Morris GP, Baxter IR, Hu TT, Chen H, Werner JD, Nordborg M, Salt DE, Kay SA, Chory J, Weigel D, Jones JD, Ecker JR. Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 104: 12057-62. PMID 17626786 DOI: 10.1073/Pnas.0705323104  0.349
2007 Baxter I, Ouzzani M, Orcun S, Kennedy B, Jandhyala SS, Salt DE. Purdue ionomics information management system. An integrated functional genomics platform. Plant Physiology. 143: 600-11. PMID 17189337 DOI: 10.1104/Pp.106.092528  0.326
2006 Rus A, Baxter I, Muthukumar B, Gustin J, Lahner B, Yakubova E, Salt DE. Natural variants of AtHKT1 enhance Na+ accumulation in two wild populations of Arabidopsis. Plos Genetics. 2: e210. PMID 17140289 DOI: 10.1371/Journal.Pgen.0020210  0.507
2006 Baxter IR, Borevitz JO. Mapping a plant's chemical vocabulary. Nature Genetics. 38: 737-8. PMID 16804534 DOI: 10.1038/Ng0706-737  0.414
2005 Baxter IR, Young JC, Armstrong G, Foster N, Bogenschutz N, Cordova T, Peer WA, Hazen SP, Murphy AS, Harper JF. A plasma membrane H+-ATPase is required for the formation of proanthocyanidins in the seed coat endothelium of Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 102: 2649-54. PMID 15695592 DOI: 10.1073/Pnas.0406377102  0.596
2005 Hazen SP, Pathan MS, Sanchez A, Baxter I, Dunn M, Estes B, Chang HS, Zhu T, Kreps JA, Nguyen HT. Expression profiling of rice segregating for drought tolerance QTLs using a rice genome array. Functional & Integrative Genomics. 5: 104-16. PMID 15480887 DOI: 10.1007/S10142-004-0126-X  0.376
2003 Baxter I, Tchieu J, Sussman MR, Boutry M, Palmgren MG, Gribskov M, Harper JF, Axelsen KB. Genomic comparison of P-type ATPase ion pumps in Arabidopsis and rice. Plant Physiology. 132: 618-28. PMID 12805592 DOI: 10.1104/Pp.103.021923  0.576
2001 Vitart V, Baxter I, Doerner P, Harper JF. Evidence for a role in growth and salt resistance of a plasma membrane H+-ATPase in the root endodermis Plant Journal. 27: 191-201. PMID 11532165 DOI: 10.1046/J.1365-313X.2001.01081.X  0.638
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