Heather W. Pinkett, Ph.D. - Related publications

2004 University of Pennsylvania, Philadelphia, PA, United States 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Briggs P, Hunter AL, Yang SH, Sharrocks AD, Iqbal M. PEGS: An efficient tool for gene set enrichment within defined sets of genomic intervals. F1000research. 10: 570. PMID 34504687 DOI: 10.12688/f1000research.53926.1   
2021 Thomas AL, Marsman J, Antony J, Schierding W, O'Sullivan JM, Horsfield JA. Transcriptional Regulation of : An Informatics Analysis. Genes. 12. PMID 34440349 DOI: 10.3390/genes12081175   
2021 Mwapagha LM, Chibanga V, Shipanga H, Parker MI. New insights from Whole Genome Sequencing: BCLAF1 deletion as a structural variant that predisposes cells towards cellular transformation. Oncology Reports. 46. PMID 34490482 DOI: 10.3892/or.2021.8180   
2021 Li Z, Yang J, Peng J, Cheng Z, Liu X, Zhang Z, Bhadauria V, Zhao W, Peng YL. Transcriptional Landscapes of Long Non-coding RNAs and Alternative Splicing in Revealed by RNA-Seq. Frontiers in Plant Science. 12: 723636. PMID 34589103 DOI: 10.3389/fpls.2021.723636   
2021 Luo X, Yang S, Luo Y, Qiu H, Li T, Li J, Chen X, Zheng X, Chen Y, Zhang J, Zhang Z, Qin C. Molecular Characterization and Expression Analysis of the Na/H Exchanger Gene Family in L. Frontiers in Genetics. 12: 680457. PMID 34539731 DOI: 10.3389/fgene.2021.680457   
2021 Lambert JT, Su-Feher L, Cichewicz K, Warren TL, Zdilar I, Wang Y, Lim KJ, Haigh JL, Morse SJ, Canales CP, Stradleigh TW, Castillo Palacios E, Haghani V, Moss SD, Parolini H, et al. Parallel functional testing identifies enhancers active in early postnatal mouse brain. Elife. 10. PMID 34605404 DOI: 10.7554/eLife.69479   
2021 Liu X, Tang N, Xu F, Chen Z, Zhang X, Ye J, Liao Y, Zhang W, Kim SU, Wu P, Cao Z. SMRT and Illumina RNA sequencing reveal the complexity of terpenoid biosynthesis in Zanthoxylum armatum. Tree Physiology. PMID 34448876 DOI: 10.1093/treephys/tpab114   
2021 Henderson S, Pullabhatla V, Hertweck A, de Rinaldis E, Herrero J, Lord GM, Jenner RG. The Th1 cell regulatory circuitry is largely conserved between human and mouse. Life Science Alliance. 4. PMID 34531288 DOI: 10.26508/lsa.202101075   
2021 Markus BM, Boydston EA, Lourido S. CRISPR-Mediated Transcriptional Repression in Toxoplasma gondii. Msphere. e0047421. PMID 34643425 DOI: 10.1128/mSphere.00474-21   
2021 Fan T, Lv T, Xie C, Zhou Y, Tian C. Genome-Wide Analysis of the Gene Family in Rice ( L.). Plants (Basel, Switzerland). 10. PMID 34579481 DOI: 10.3390/plants10091949   
2021 Xu W, Liu T, Zhang H, Zhu H. Mungbean Gene Subfamilies and Their Expression Profiles Under Salt and Drought Stresses. Frontiers in Genetics. 12: 658148. PMID 34630501 DOI: 10.3389/fgene.2021.658148   
2021 Villarroel CA, Bastías M, Canessa P, Cubillos FA. Uncovering Divergence in Gene Expression Regulation in the Adaptation of Yeast to Nitrogen Scarcity. Msystems. 6: e0046621. PMID 34427519 DOI: 10.1128/mSystems.00466-21   
2021 Channappa M, Sharma S, Kulshreshtha D, Singh K, Bhardwaj SC, Murugasamy S, Sindhu A, Vikas VK, Aggarwal R. Transcriptome profiling and differential gene expression analysis provides insights into 24-based resistance in wheat against . 3 Biotech. 11: 455. PMID 34631354 DOI: 10.1007/s13205-021-02972-9   
2021 Chung H, Parkhurst CN, Magee EM, Phillips D, Habibi E, Chen F, Yeung BZ, Waldman J, Artis D, Regev A. Joint single-cell measurements of nuclear proteins and RNA in vivo. Nature Methods. 18: 1204-1212. PMID 34608310 DOI: 10.1038/s41592-021-01278-1   
2021 Laskar P, Bhattacharya S, Chaudhuri A, Kundu A. Exploring the GRAS gene family in common bean (Phaseolus vulgaris L.): characterization, evolutionary relationships, and expression analyses in response to abiotic stresses. Planta. 254: 84. PMID 34561734 DOI: 10.1007/s00425-021-03725-x   
2021 Deng Y, Huang H, Rong Y, Hu S, Hu J, Hu B, He H, Li L, Wang J. Molecular characterization, expression profile and transcriptional regulation of the CYP19 gene in goose ovarian follicles. Gene. 145928. PMID 34455027 DOI: 10.1016/j.gene.2021.145928   
2021 Zinani OQH, Keseroğlu K, Özbudak EM. Regulatory mechanisms ensuring coordinated expression of functionally related genes. Trends in Genetics : Tig. PMID 34376301 DOI: 10.1016/j.tig.2021.07.008   
2021 Chen T, Peng X, Qin J, Qin X, Wu M, Huang J, Huang X, Wei D, Wang L, Jin G. [In silico cloning, expression and bioinformatics analysis of NtODB from common tobacco]. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 37: 2836-2844. PMID 34472301 DOI: 10.13345/j.cjb.200669   
2021 Yu S, Sun Q, Wu J, Zhao P, Sun Y, Guo Z. Genome-Wide Identification and Characterization of Short-Chain Dehydrogenase/Reductase (SDR) Gene Family in . International Journal of Molecular Sciences. 22. PMID 34502406 DOI: 10.3390/ijms22179498   
2021 Wang L, Li JH, Huang HY, Wu Q. [Serial deletions of tandem reverse CTCF sites reveal balanced regulatory landscape of enhancers]. Yi Chuan = Hereditas. 43: 775-791. PMID 34413017 DOI: 10.16288/j.yczz.21-132   
2021 Xu M, Hu Z, Lai W, Liu S, Wu H, Zhou Y. Comprehensive analysis of 14-3-3 family genes and their responses to cold and drought stress in cucumber. Functional Plant Biology : Fpb. PMID 34635203 DOI: 10.1071/FP21022   
2021 Shi K, Zhu X, Wu J, Chen Y, Zhang J, Sun X. Centromere protein E as a novel biomarker and potential therapeutic target for retinoblastoma. Bioengineered. 12: 5950-5970. PMID 34482803 DOI: 10.1080/21655979.2021.1972080   
2021 Meiler A, Marchiano F, Haering M, Weitkunat M, Schnorrer F, Habermann BH. AnnoMiner is a new web-tool to integrate epigenetics, transcription factor occupancy and transcriptomics data to predict transcriptional regulators. Scientific Reports. 11: 15463. PMID 34326396 DOI: 10.1038/s41598-021-94805-1   
2021 Nair VD, Vasoya M, Nair V, Smith GR, Pincas H, Ge Y, Douglas CM, Esser KA, Sealfon SC. Differential analysis of chromatin accessibility and gene expression profiles identifies cis-regulatory elements in rat adipose and muscle. Genomics. 113: 3827-3841. PMID 34547403 DOI: 10.1016/j.ygeno.2021.09.013   
2021 Luo G, Shen L, Zhao S, Li R, Song Y, Song S, Yu K, Yang W, Li X, Sun J, Wang Y, Gao C, Liu D, Zhang A. Genome-wide identification of seed storage protein gene regulators in wheat through coexpression analysis. The Plant Journal : For Cell and Molecular Biology. PMID 34634158 DOI: 10.1111/tpj.15538   
2021 Song N, Cheng Y, Peng W, Peng E, Zhao Z, Liu T, Yi T, Dai L, Wang B, Hong Y. Genome-Wide Characterization and Expression Analysis of the Gene Family in Sweet Orange (). International Journal of Molecular Sciences. 22. PMID 34445624 DOI: 10.3390/ijms22168918   
2021 Rodionova IA, Gao Y, Sastry A, Hefner Y, Lim HG, Rodionov DA, Saier MH, Palsson BO. Identification of a transcription factor, PunR, that regulates the purine and purine nucleoside transporter punC in E. coli. Communications Biology. 4: 991. PMID 34413462 DOI: 10.1038/s42003-021-02516-0   
2021 Wang Z, Zhang R, Cheng Y, Lei P, Song W, Zheng W, Nie X. Genome-Wide Identification, Evolution, and Expression Analysis of LBD Transcription Factor Family in Bread Wheat ( L.). Frontiers in Plant Science. 12: 721253. PMID 34539714 DOI: 10.3389/fpls.2021.721253   
2021 Meléndez-Ramírez C, Cuevas-Diaz Duran R, Barrios-García T, Giacoman-Lozano M, López-Ornelas A, Herrera-Gamboa J, Estudillo E, Soto-Reyes E, Velasco I, Treviño V. Dynamic landscape of chromatin accessibility and transcriptomic changes during differentiation of human embryonic stem cells into dopaminergic neurons. Scientific Reports. 11: 16977. PMID 34417498 DOI: 10.1038/s41598-021-96263-1   
2021 Cuesta-Astroz Y, Gischkow Rucatti G, Murgas L, SanMartín CD, Sanhueza M, Martin AJM. Filtering of Data-Driven Gene Regulatory Networks Using as a Case Study. Frontiers in Genetics. 12: 649764. PMID 34394179 DOI: 10.3389/fgene.2021.649764   
2021 Li C, Sun J, Liu Q, Dodlapati S, Ming H, Wang L, Li Y, Li R, Jiang Z, Francis J, Fu X. The landscape of accessible chromatin in quiescent cardiac fibroblasts and cardiac fibroblasts activated after myocardial infarction. Epigenetics. PMID 34551670 DOI: 10.1080/15592294.2021.1982158   
2021 Kumar S, Ruggles A, Logan S, Mazarakis A, Tyson T, Bates M, Grosse C, Reed D, Li Z, Grimwood J, Schmutz J, Saski C. Comparative Transcriptomics of Non-Embryogenic and Embryogenic Callus in Semi-Recalcitrant and Non-Recalcitrant Upland Cotton Lines. Plants (Basel, Switzerland). 10. PMID 34579308 DOI: 10.3390/plants10091775   
2021 Su W, Raza A, Gao A, Jia Z, Zhang Y, Hussain MA, Mehmood SS, Cheng Y, Lv Y, Zou X. Genome-Wide Analysis and Expression Profile of Superoxide Dismutase (SOD) Gene Family in Rapeseed ( L.) under Different Hormones and Abiotic Stress Conditions. Antioxidants (Basel, Switzerland). 10. PMID 34439430 DOI: 10.3390/antiox10081182   
2021 Zhao YP, Shen JL, Li WJ, Wu N, Chen C, Hou YX. Evolutionary and Characteristic Analysis of RING-DUF1117 E3 Ubiquitin Ligase Genes in Discerning the Role of GhRDUF4D in Resistance. Biomolecules. 11. PMID 34439811 DOI: 10.3390/biom11081145   
2021 Dai Z, Ren J, Tong X, Hu H, Lu K, Dai F, Han MJ. The Landscapes of Full-Length Transcripts and Splice Isoforms as Well as Transposons Exonization in the Lepidopteran Model System, . Frontiers in Genetics. 12: 704162. PMID 34594358 DOI: 10.3389/fgene.2021.704162   
2021 Chae K, Valentin C, Jakes E, Myles KM, Adelman ZN. Novel synthetic 3'-untranslated regions for controlling transgene expression in transgenic mosquitoes. Rna Biology. 1-9. PMID 34464234 DOI: 10.1080/15476286.2021.1971440   
2021 Wang Y, Ji J, Tong L, Fang Z, Yang L, Zhuang M, Zhang Y, Lv H. Global Survey of the Full-Length Cabbage Transcriptome ( Var. L.) Reveals Key Alternative Splicing Events Involved in Growth and Disease Response. International Journal of Molecular Sciences. 22. PMID 34638781 DOI: 10.3390/ijms221910443   
2021 Kotarba G, Taracha-Wisniewska A, Miller M, Dabrowski M, Wilanowski T. Transcription factors Krüppel-like factor 4 and paired box 5 regulate the expression of the Grainyhead-like genes. Plos One. 16: e0257977. PMID 34570823 DOI: 10.1371/journal.pone.0257977   
2021 Graham PL, Fischer MD, Giri A, Pick L. The fushi tarazu zebra element is not required for Drosophila viability or fertility. G3 (Bethesda, Md.). PMID 34518886 DOI: 10.1093/g3journal/jkab300   
2021 Pardo-Medina J, Gutiérrez G, Limón MC, Avalos J. The lncRNA Is a -Related Regulatory Element with Broad Effects on the Transcriptome. Non-Coding Rna. 7. PMID 34449676 DOI: 10.3390/ncrna7030046   
2021 Liang W, Zou X, Li G, Zhou S, Tian C, Schaefke B. Systematic Analysis of Monoallelic Gene Expression and Chromatin Accessibility Across Multiple Tissues in Hybrid Mice. Frontiers in Cell and Developmental Biology. 9: 717555. PMID 34631706 DOI: 10.3389/fcell.2021.717555   
2021 Xia Y, Yang J, Ma L, Yan S, Pang Y. Genome-Wide Identification and Analyses of Drought/Salt-Responsive Cytochrome Genes in . International Journal of Molecular Sciences. 22. PMID 34576120 DOI: 10.3390/ijms22189957   
2021 Price EE, Rudra P, Norambuena J, Román-Rodríguez F, Boyd JM. Tools, strains, and strategies to effectively conduct anaerobic and aerobic transcriptional reporter screens and assays in . Applied and Environmental Microbiology. AEM0110821. PMID 34406831 DOI: 10.1128/AEM.01108-21   
2021 Dai Z, Li R, Hou Y, Li Q, Zhao K, Li T, Li MJ, Wu X. Inducible CRISPRa screen identifies putative enhancers. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 34531148 DOI: 10.1016/j.jgg.2021.06.012   
2021 El-Sappah AH, Elbaiomy RG, Elrys AS, Wang Y, Zhu Y, Huang Q, Yan K, Xianming Z, Abbas M, El-Tarabily KA, Li J. Genome-Wide Identification and Expression Analysis of Metal Tolerance Protein Gene Family in Under a Broad Range of Heavy Metal Stress. Frontiers in Genetics. 12: 713224. PMID 34603378 DOI: 10.3389/fgene.2021.713224   
2021 Das Roy R, Hallikas O, Christensen MM, Renvoisé E, Jernvall J. Chromosomal neighbourhoods allow identification of organ specific changes in gene expression. Plos Computational Biology. 17: e1008947. PMID 34506480 DOI: 10.1371/journal.pcbi.1008947   
2021 Singh AN, Sharma N. In-silico identification of frequently mutated genes and their co-enriched metabolic pathways associated with Prostate cancer progression. Andrologia. e14236. PMID 34468989 DOI: 10.1111/and.14236   
2021 Huang J, Zhang Q, He Y, Liu W, Xu Y, Liu K, Xian F, Li J, Hu J. Genome-Wide Identification, Expansion Mechanism and Expression Profiling Analysis of   Gene Family in Gramineae Crops. International Journal of Molecular Sciences. 22. PMID 34445464 DOI: 10.3390/ijms22168758   
2021 Hajirnis N, Mishra RK. Homeotic Genes: Clustering, Modularity, and Diversity. Frontiers in Cell and Developmental Biology. 9: 718308. PMID 34458272 DOI: 10.3389/fcell.2021.718308   
2021 Ali H, Bhange D, Mehta K, Gohil Y, Prajapati HK, Byrareddy SN, Buch S, Ranga U. An emerging and variant viral promoter of HIV-1 subtype C exhibits low-level gene expression noise. Retrovirology. 18: 27. PMID 34538278 DOI: 10.1186/s12977-021-00572-2