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Matthew D. Daugherty, Ph.D. - Publications

Affiliations: 
2009 Chemistry and Chemical Biology University of California, San Francisco, San Francisco, CA 
Area:
Molecular Biology, General Biophysics
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30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Tsu BV, Agarwal R, Gokhale NS, Kulsuptrakul J, Ryan AP, Fay EJ, Castro LK, Beierschmitt C, Yap C, Turcotte EA, Delgado-Rodriguez SE, Vance RE, Hyde JL, Savan R, Mitchell PS, ... Daugherty MD, et al. Host-specific sensing of coronaviruses and picornaviruses by the CARD8 inflammasome. Plos Biology. 21: e3002144. PMID 37289745 DOI: 10.1371/journal.pbio.3002144  0.45
2023 Delgado-Rodriguez SE, Ryan AP, Daugherty MD. Recurrent Loss of Macrodomain Activity in Host Immunity and Viral Proteins. Pathogens (Basel, Switzerland). 12. PMID 37242344 DOI: 10.3390/pathogens12050674  0.315
2023 Goodrum F, Lowen A, Lakdawala S, Alwine J, Casadevall A, Imperiale M, Atwood W, Avgousti D, Baines J, Banfield B, Banks L, Bhaduri-McIntosh S, Bhattacharya D, Blanco-Melo D, Bloom D, ... ... Daugherty M, et al. Virology under the Microscope-a Call for Rational Discourse. Msphere. e0003423. PMID 36700653 DOI: 10.1128/msphere.00034-23  0.622
2023 Goodrum F, Lowen A, Lakdawala S, Alwine J, Casadevall A, Imperiale M, Atwood W, Avgousti D, Baines J, Banfield B, Banks L, Bhaduri-McIntosh S, Bhattacharya D, Blanco-Melo D, Bloom D, ... ... Daugherty M, et al. Virology under the Microscope-a Call for Rational Discourse. Mbio. e0018823. PMID 36700642 DOI: 10.1128/mbio.00188-23  0.622
2023 Goodrum F, Lowen A, Lakdawala S, Alwine J, Casadevall A, Imperiale M, Atwood W, Avgousti D, Baines J, Banfield B, Banks L, Bhaduri-McIntosh S, Bhattacharya D, Blanco-Melo D, Bloom D, ... ... Daugherty M, et al. Virology under the Microscope-a Call for Rational Discourse. Journal of Virology. e0008923. PMID 36700640 DOI: 10.1128/jvi.00089-23  0.622
2022 Tsu BV, Agarwal R, Gokhale NS, Kulsuptrakul J, Ryan AP, Castro LK, Beierschmitt CM, Turcotte EA, Fay EJ, Vance RE, Hyde JL, Savan R, Mitchell PS, Daugherty MD. Host specific sensing of coronaviruses and picornaviruses by the CARD8 inflammasome. Biorxiv : the Preprint Server For Biology. PMID 36172130 DOI: 10.1101/2022.09.21.508960  0.445
2021 Tsu BV, Beierschmitt C, Ryan AP, Agarwal R, Mitchell PS, Daugherty MD. Diverse viral proteases activate the NLRP1 inflammasome. Elife. 10. PMID 33410748 DOI: 10.7554/eLife.60609  0.488
2019 Schwerk J, Soveg FW, Ryan AP, Thomas KR, Hatfield LD, Ozarkar S, Forero A, Kell AM, Roby JA, So L, Hyde JL, Gale M, Daugherty MD, Savan R. RNA-binding protein isoforms ZAP-S and ZAP-L have distinct antiviral and immune resolution functions. Nature Immunology. PMID 31740798 DOI: 10.1038/S41590-019-0527-6  0.446
2019 Daugherty MD, Zanders SE. Gene conversion generates evolutionary novelty that fuels genetic conflicts. Current Opinion in Genetics & Development. 58: 49-54. PMID 31466040 DOI: 10.1016/J.Gde.2019.07.011  0.687
2017 Moens U, Calvignac-Spencer S, Lauber C, Ramqvist T, Feltkamp MCW, Daugherty MD, Verschoor EJ, Ehlers B, Ictv Report Consortium. ICTV Virus Taxonomy Profile: Polyomaviridae. The Journal of General Virology. PMID 28640744 DOI: 10.1099/Jgv.0.000839  0.335
2016 Chavarría-Smith J, Mitchell PS, Ho AM, Daugherty MD, Vance RE. Functional and Evolutionary Analyses Identify Proteolysis as a General Mechanism for NLRP1 Inflammasome Activation. Plos Pathogens. 12: e1006052. PMID 27926929 DOI: 10.1371/Journal.Ppat.1006052  0.513
2016 Daugherty MD, Schaller AM, Geballe AP, Malik HS. Evolution-guided functional analyses reveal diverse antiviral specificities encoded by IFIT1 genes in mammals. Elife. 5. PMID 27240734 DOI: 10.7554/Elife.14228  0.607
2016 Daugherty MD, Schaller AM, Geballe AP, Malik HS. Author response: Evolution-guided functional analyses reveal diverse antiviral specificities encoded by IFIT1 genes in mammals Elife. DOI: 10.7554/Elife.14228.023  0.569
2015 Chou S, Daugherty MD, Peterson SB, Biboy J, Yang Y, Jutras BL, Fritz-Laylin LK, Ferrin MA, Harding BN, Jacobs-Wagner C, Yang XF, Vollmer W, Malik HS, Mougous JD. Transferred interbacterial antagonism genes augment eukaryotic innate immune function. Nature. 518: 98-101. PMID 25470067 DOI: 10.1038/Nature13965  0.579
2014 Daugherty MD, Malik HS. How a virus blocks a cellular emergency access lane to the nucleus, STAT! Cell Host & Microbe. 16: 150-2. PMID 25121743 DOI: 10.1016/J.Chom.2014.07.013  0.554
2014 Daugherty MD, Young JM, Kerns JA, Malik HS. Rapid evolution of PARP genes suggests a broad role for ADP-ribosylation in host-virus conflicts. Plos Genetics. 10: e1004403. PMID 24875882 DOI: 10.1371/Journal.Pgen.1004403  0.631
2014 Tenthorey JL, Kofoed EM, Daugherty MD, Malik HS, Vance RE. Molecular basis for specific recognition of bacterial ligands by NAIP/NLRC4 inflammasomes. Molecular Cell. 54: 17-29. PMID 24657167 DOI: 10.1016/J.Molcel.2014.02.018  0.711
2013 Carter JJ, Daugherty MD, Qi X, Bheda-Malge A, Wipf GC, Robinson K, Roman A, Malik HS, Galloway DA. Identification of an overprinting gene in Merkel cell polyomavirus provides evolutionary insight into the birth of viral genes. Proceedings of the National Academy of Sciences of the United States of America. 110: 12744-9. PMID 23847207 DOI: 10.1073/Pnas.1303526110  0.604
2012 Daugherty MD, Malik HS. Rules of engagement: molecular insights from host-virus arms races. Annual Review of Genetics. 46: 677-700. PMID 23145935 DOI: 10.1146/Annurev-Genet-110711-155522  0.609
2010 Wang H, Ma X, Yeh YS, Zhu Y, Daugherty MD, Frankel AD, Musier-Forsyth K, Barbara PF. Comparative analysis of RNA/protein dynamics for the arginine-rich-binding motif and zinc-finger-binding motif proteins encoded by HIV-1. Biophysical Journal. 99: 3454-62. PMID 21081095 DOI: 10.1016/J.Bpj.2010.09.051  0.664
2010 Daugherty MD, Liu B, Frankel AD. Structural basis for cooperative RNA binding and export complex assembly by HIV Rev. Nature Structural & Molecular Biology. 17: 1337-42. PMID 20953181 DOI: 10.1038/Nsmb.1902  0.673
2010 Daugherty MD, Booth DS, Jayaraman B, Cheng Y, Frankel AD. HIV Rev response element (RRE) directs assembly of the Rev homooligomer into discrete asymmetric complexes. Proceedings of the National Academy of Sciences of the United States of America. 107: 12481-6. PMID 20616058 DOI: 10.1073/Pnas.1007022107  0.752
2009 Yeh Y, Wang H, Barbara PF, Daugherty MD, Frankel AD, Musier-Forsyth K. Nucleocapsid Protein Locally Melts The Iib Region Of Hiv-1 Rre Rna, But Rev Protein Does Not: A Single-molecule Spectroscopic Study Biophysical Journal. 96: 292a. DOI: 10.1016/J.Bpj.2008.12.1446  0.667
2008 Daugherty MD, D'Orso I, Frankel AD. A solution to limited genomic capacity: using adaptable binding surfaces to assemble the functional HIV Rev oligomer on RNA. Molecular Cell. 31: 824-34. PMID 18922466 DOI: 10.1016/J.Molcel.2008.07.016  0.659
2006 Mills NL, Daugherty MD, Frankel AD, Guy RK. An alpha-helical peptidomimetic inhibitor of the HIV-1 Rev-RRE interaction. Journal of the American Chemical Society. 128: 3496-7. PMID 16536504 DOI: 10.1021/ja0582051  0.58
2005 Landt SG, Ramirez A, Daugherty MD, Frankel AD. A simple motif for protein recognition in DNA secondary structures. Journal of Molecular Biology. 351: 982-94. PMID 16055152 DOI: 10.1016/J.Jmb.2005.07.001  0.733
2005 Calabro V, Daugherty MD, Frankel AD. A single intermolecular contact mediates intramolecular stabilization of both RNA and protein. Proceedings of the National Academy of Sciences of the United States of America. 102: 6849-54. PMID 15857951 DOI: 10.1073/Pnas.0409282102  0.636
2003 Gerdes SY, Scholle MD, Campbell JW, Balázsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, et al. Experimental determination and system level analysis of essential genes in Escherichia coli MG1655. Journal of Bacteriology. 185: 5673-84. PMID 13129938 DOI: 10.1128/Jb.185.19.5673-5684.2003  0.312
2002 Gerdes SY, Scholle MD, D'Souza M, Bernal A, Baev MV, Farrell M, Kurnasov OV, Daugherty MD, Mseeh F, Polanuyer BM, Campbell JW, Anantha S, Shatalin KY, Chowdhury SA, Fonstein MY, et al. From genetic footprinting to antimicrobial drug targets: examples in cofactor biosynthetic pathways. Journal of Bacteriology. 184: 4555-72. PMID 12142426 DOI: 10.1128/Jb.184.16.4555-4572.2002  0.307
2002 Daugherty M, Polanuyer B, Farrell M, Scholle M, Lykidis A, de Crécy-Lagard V, Osterman A. Complete reconstitution of the human coenzyme A biosynthetic pathway via comparative genomics. The Journal of Biological Chemistry. 277: 21431-9. PMID 11923312 DOI: 10.1074/Jbc.M201708200  0.305
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