Jeffrey R. Whiteaker, Ph.D. - Publications

Affiliations: 
2002 University of California, Riverside, Riverside, CA, United States 
Area:
Analytical Chemistry, Environmental Engineering

22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Kennedy JJ, Whiteaker JR, Schoenherr RM, Yan P, Allison K, Shipley M, Lerch M, Hoofnagle AN, Baird GS, Paulovich AG. Optimized Protocol for Quantitative Multiple Reaction Monitoring-Based Proteomic Analysis of Formalin-Fixed, Paraffin-Embedded Tissues. Journal of Proteome Research. PMID 27462933 DOI: 10.1021/acs.jproteome.6b00245  0.48
2016 Whiteaker JR, Halusa GN, Hoofnagle AN, Sharma V, MacLean B, Yan P, Wrobel JA, Kennedy J, Mani DR, Zimmerman LJ, Meyer MR, Mesri M, Boja E, Carr SA, Chan DW, et al. Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays. Methods in Molecular Biology (Clifton, N.J.). 1410: 223-36. PMID 26867747 DOI: 10.1007/978-1-4939-3524-6_13  0.48
2015 Kennedy JJ, Yan P, Zhao L, Ivey RG, Voytovich UJ, Moore HD, Lin C, Pogosova-Agadjanyan EL, Stirewalt DL, Reding KW, Whiteaker JR, Paulovich AG. Immobilized metal affinity chromatography coupled to multiple reaction monitoring enables reproducible quantification of phospho-signaling. Molecular & Cellular Proteomics : McP. PMID 26621847 DOI: 10.1074/mcp.O115.054940  0.48
2015 Marcon E, Jain H, Bhattacharya A, Guo H, Phanse S, Pu S, Byram G, Collins BC, Dowdell E, Fenner M, Guo X, Hutchinson A, Kennedy JJ, Krastins B, Larsen B, ... ... Whiteaker JR, et al. Assessment of a method to characterize antibody selectivity and specificity for use in immunoprecipitation. Nature Methods. PMID 26121405 DOI: 10.1038/nmeth.3472  0.48
2015 Whiteaker JR, Zhao L, Yan P, Ivey RG, Voytovich UJ, Moore HD, Lin C, Paulovich AG. Peptide immunoaffinity enrichment and targeted mass spectrometry enables multiplex, quantitative pharmacodynamic studies of phospho-signaling. Molecular & Cellular Proteomics : McP. PMID 25987412 DOI: 10.1074/mcp.O115.050351  0.48
2014 Sharma V, Eckels J, Taylor GK, Shulman NJ, Stergachis AB, Joyner SA, Yan P, Whiteaker JR, Halusa GN, Schilling B, Gibson BW, Colangelo CM, Paulovich AG, Carr SA, Jaffe JD, et al. Panorama: a targeted proteomics knowledge base. Journal of Proteome Research. 13: 4205-10. PMID 25102069 DOI: 10.1021/pr5006636  0.48
2014 Whiteaker JR, Halusa GN, Hoofnagle AN, Sharma V, MacLean B, Yan P, Wrobel JA, Kennedy J, Mani DR, Zimmerman LJ, Meyer MR, Mesri M, Rodriguez H, Paulovich AG. CPTAC Assay Portal: a repository of targeted proteomic assays. Nature Methods. 11: 703-4. PMID 24972168 DOI: 10.1038/nmeth.3002  0.48
2014 Kennedy JJ, Abbatiello SE, Kim K, Yan P, Whiteaker JR, Lin C, Kim JS, Zhang Y, Wang X, Ivey RG, Zhao L, Min H, Lee Y, Yu MH, Yang EG, et al. Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins. Nature Methods. 11: 149-55. PMID 24317253 DOI: 10.1038/nmeth.2763  0.48
2012 Kuhn E, Whiteaker JR, Mani DR, Jackson AM, Zhao L, Pope ME, Smith D, Rivera KD, Anderson NL, Skates SJ, Pearson TW, Paulovich AG, Carr SA. Interlaboratory evaluation of automated, multiplexed peptide immunoaffinity enrichment coupled to multiple reaction monitoring mass spectrometry for quantifying proteins in plasma. Molecular & Cellular Proteomics : McP. 11: M111.013854. PMID 22199228 DOI: 10.1074/mcp.M111.013854  0.48
2011 Zhao L, Whiteaker JR, Pope ME, Kuhn E, Jackson A, Anderson NL, Pearson TW, Carr SA, Paulovich AG. Quantification of proteins using peptide immunoaffinity enrichment coupled with mass spectrometry. Journal of Visualized Experiments : Jove. PMID 21841765 DOI: 10.3791/2812  0.48
2011 Whiteaker JR, Lin C, Kennedy J, Hou L, Trute M, Sokal I, Yan P, Schoenherr RM, Zhao L, Voytovich UJ, Kelly-Spratt KS, Krasnoselsky A, Gafken PR, Hogan JM, Jones LA, et al. A targeted proteomics-based pipeline for verification of biomarkers in plasma. Nature Biotechnology. 29: 625-34. PMID 21685906 DOI: 10.1038/nbt.1900  0.48
2011 Schoenherr RM, Kelly-Spratt KS, Lin C, Whiteaker JR, Liu T, Holzman T, Coleman I, Feng LC, Lorentzen TD, Krasnoselsky AL, Wang P, Liu Y, Gurley KE, Amon LM, Schepmoes AA, et al. Proteome and transcriptome profiles of a Her2/Neu-driven mouse model of breast cancer. Proteomics. Clinical Applications. 5: 179-88. PMID 21448875 DOI: 10.1002/prca.201000037  0.48
2011 Whiteaker JR, Zhao L, Abbatiello SE, Burgess M, Kuhn E, Lin C, Pope ME, Razavi M, Anderson NL, Pearson TW, Carr SA, Paulovich AG. Evaluation of large scale quantitative proteomic assay development using peptide affinity-based mass spectrometry. Molecular & Cellular Proteomics : McP. 10: M110.005645. PMID 21245105 DOI: 10.1074/mcp.M110.005645  0.48
2010 MacLean B, Tomazela DM, Abbatiello SE, Zhang S, Whiteaker JR, Paulovich AG, Carr SA, MacCoss MJ. Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry Analytical Chemistry. 82: 10116-10124. PMID 21090646 DOI: 10.1021/ac102179j  0.48
2010 Tabb DL, Vega-Montoto L, Rudnick PA, Variyath AM, Ham AJ, Bunk DM, Kilpatrick LE, Billheimer DD, Blackman RK, Cardasis HL, Carr SA, Clauser KR, Jaffe JD, Kowalski KA, Neubert TA, ... ... Whiteaker JR, et al. Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry. Journal of Proteome Research. 9: 761-76. PMID 19921851 DOI: 10.1021/pr9006365  0.48
2010 Paulovich AG, Billheimer D, Ham AJ, Vega-Montoto L, Rudnick PA, Tabb DL, Wang P, Blackman RK, Bunk DM, Cardasis HL, Clauser KR, Kinsinger CR, Schilling B, Tegeler TJ, Variyath AM, ... ... Whiteaker JR, et al. Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance. Molecular & Cellular Proteomics : McP. 9: 242-54. PMID 19858499 DOI: 10.1074/mcp.M900222-MCP200  0.48
2010 Rudnick PA, Clauser KR, Kilpatrick LE, Tchekhovskoi DV, Neta P, Blonder N, Billheimer DD, Blackman RK, Bunk DM, Cardasis HL, Ham AJ, Jaffe JD, Kinsinger CR, Mesri M, Neubert TA, ... ... Whiteaker JR, et al. Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses. Molecular & Cellular Proteomics : McP. 9: 225-41. PMID 19837981 DOI: 10.1074/mcp.M900223-MCP200  0.48
2009 Addona TA, Abbatiello SE, Schilling B, Skates SJ, Mani DR, Bunk DM, Spiegelman CH, Zimmerman LJ, Ham AJ, Keshishian H, Hall SC, Allen S, Blackman RK, Borchers CH, Buck C, ... ... Whiteaker JR, et al. Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma. Nature Biotechnology. 27: 633-41. PMID 19561596 DOI: 10.1038/nbt.1546  0.48
2007 Whiteaker JR, Zhang H, Zhao L, Wang P, Kelly-Spratt KS, Ivey RG, Piening BD, Feng LC, Kasarda E, Gurley KE, Eng JK, Chodosh LA, Kemp CJ, McIntosh MW, Paulovich AG. Integrated pipeline for mass spectrometry-based discovery and confirmation of biomarkers demonstrated in a mouse model of breast cancer. Journal of Proteome Research. 6: 3962-75. PMID 17711321 DOI: 10.1021/pr070202v  0.48
2007 Whiteaker JR, Zhang H, Eng JK, Fang R, Piening BD, Feng LC, Lorentzen TD, Schoenherr RM, Keane JF, Holzman T, Fitzgibbon M, Lin C, Zhang H, Cooke K, Liu T, et al. Head-to-head comparison of serum fractionation techniques. Journal of Proteome Research. 6: 828-36. PMID 17269739 DOI: 10.1021/pr0604920  0.48
2004 Whiteaker JR, Warscheid B, Pribil P, Hathout Y, Fenselau C. Complete sequences of small acid-soluble proteins from Bacillus globigii. Journal of Mass Spectrometry : Jms. 39: 1113-21. PMID 15468161 DOI: 10.1002/jms.668  0.48
2002 Whiteaker JR, Suess DT, Prather KA. Effects of meteorological conditions on aerosol composition and mixing state in Bakersfield, CA. Environmental Science & Technology. 36: 2345-53. PMID 12075789 DOI: 10.1021/es011381z  0.48
Show low-probability matches.